Wall clock time and date at job start Tue Mar 31 2020 21:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99749 * 2 1 4 4 H 1.48503 * 109.46879 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47660 * 299.99765 * 3 2 1 6 6 H 1.48504 * 109.47079 * 60.00295 * 3 2 1 7 7 C 1.37875 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00537 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99430 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47183 * 174.95273 * 9 7 2 11 11 C 1.46955 * 111.00247 * 64.90738 * 10 9 7 12 12 C 1.53043 * 109.36968 * 176.81414 * 11 10 9 13 13 N 1.46955 * 109.36615 * 58.40079 * 12 11 10 14 14 C 1.46897 * 111.00502 * 176.81558 * 13 12 11 15 15 C 1.53005 * 109.47470 * 176.09976 * 14 13 12 16 16 H 1.09003 * 109.46848 * 299.54306 * 15 14 13 17 17 C 1.53085 * 109.47317 * 179.53159 * 15 14 13 18 18 C 1.53209 * 109.14537 * 182.36466 * 17 15 14 19 19 C 1.53060 * 109.02167 * 56.86913 * 18 17 15 20 20 C 1.53064 * 109.53702 * 182.99796 * 19 18 17 21 21 C 1.53112 * 109.16579 * 296.87910 * 20 19 18 22 22 O 1.42909 * 109.41471 * 302.54198 * 21 20 19 23 23 C 1.42910 * 114.12308 * 61.17592 * 22 21 20 24 24 C 1.53078 * 109.50871 * 63.23263 * 19 18 17 25 25 C 1.52963 * 109.36113 * 303.14810 * 19 18 17 26 26 O 1.42896 * 109.47207 * 59.54698 * 15 14 13 27 27 C 1.46967 * 110.87935 * 300.68341 * 13 12 11 28 28 C 1.46955 * 111.00112 * 301.10934 * 10 9 7 29 29 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47297 * 54.95091 * 9 7 2 31 31 H 1.09002 * 109.47555 * 294.95438 * 9 7 2 32 32 H 1.09004 * 109.49119 * 56.84373 * 11 10 9 33 33 H 1.09001 * 109.50482 * 296.79756 * 11 10 9 34 34 H 1.08999 * 109.49373 * 178.37222 * 12 11 10 35 35 H 1.09000 * 109.49107 * 298.43529 * 12 11 10 36 36 H 1.09004 * 109.46542 * 296.09716 * 14 13 12 37 37 H 1.08998 * 109.47201 * 56.09740 * 14 13 12 38 38 H 1.08999 * 109.52592 * 302.26648 * 17 15 14 39 39 H 1.09000 * 109.52560 * 62.40000 * 17 15 14 40 40 H 1.09006 * 109.54233 * 176.73203 * 18 17 15 41 41 H 1.08999 * 109.54762 * 296.91283 * 18 17 15 42 42 H 1.08992 * 109.52041 * 56.78626 * 20 19 18 43 43 H 1.09005 * 109.51867 * 176.97014 * 20 19 18 44 44 H 1.09005 * 109.48144 * 182.56773 * 21 20 19 45 45 H 1.08996 * 109.49293 * 62.53002 * 21 20 19 46 46 H 1.09001 * 109.48195 * 178.82258 * 23 22 21 47 47 H 1.09000 * 109.49673 * 58.78886 * 23 22 21 48 48 H 1.09006 * 109.52638 * 183.02217 * 24 19 18 49 49 H 1.08995 * 109.52327 * 303.21396 * 24 19 18 50 50 H 1.09002 * 109.48467 * 177.43736 * 25 19 18 51 51 H 1.09005 * 109.48240 * 297.46139 * 25 19 18 52 52 H 1.09000 * 109.48533 * 299.34867 * 27 13 12 53 53 H 1.08995 * 109.48802 * 179.28539 * 27 13 12 54 54 H 1.08999 * 109.48916 * 303.15877 * 28 10 9 55 55 H 1.09005 * 109.49003 * 63.21387 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2009 -3.6129 -0.1230 11 6 3.0782 -3.6888 1.0535 12 6 3.9968 -4.9060 0.9241 13 7 4.7853 -4.7924 -0.3107 14 6 5.7352 -5.9062 -0.4333 15 6 6.4674 -5.8072 -1.7731 16 1 5.7446 -5.8636 -2.5871 17 6 7.4656 -6.9613 -1.8957 18 6 8.2359 -6.8216 -3.2127 19 6 8.9195 -5.4525 -3.2479 20 6 9.6313 -5.2703 -4.5907 21 6 10.7333 -6.3250 -4.7228 22 8 11.6389 -6.2059 -3.6237 23 6 11.0365 -6.4164 -2.3450 24 6 9.9471 -5.3650 -2.1167 25 6 7.8679 -4.3559 -3.0711 26 8 7.1671 -4.5632 -1.8428 27 6 3.9080 -4.7165 -1.4874 28 6 2.9895 -3.4993 -1.3578 29 1 -0.4850 0.8400 0.0004 30 1 0.5579 -2.5185 -0.8416 31 1 0.6943 -2.5972 0.9314 32 1 2.4715 -3.7851 1.9540 33 1 3.6814 -2.7831 1.1167 34 1 4.6681 -4.9479 1.7818 35 1 3.3946 -5.8139 0.8887 36 1 6.4587 -5.8578 0.3806 37 1 5.1950 -6.8516 -0.3834 38 1 8.1643 -6.9290 -1.0598 39 1 6.9288 -7.9099 -1.8854 40 1 8.9888 -7.6070 -3.2798 41 1 7.5441 -6.9069 -4.0507 42 1 8.9138 -5.3896 -5.4024 43 1 10.0725 -4.2746 -4.6368 44 1 11.2735 -6.1713 -5.6570 45 1 10.2872 -7.3194 -4.7200 46 1 11.7949 -6.3290 -1.5670 47 1 10.5937 -7.4118 -2.3109 48 1 10.3957 -4.3716 -2.1081 49 1 9.4549 -5.5517 -1.1623 50 1 8.3578 -3.3824 -3.0503 51 1 7.1633 -4.3906 -3.9021 52 1 3.3049 -5.6223 -1.5501 53 1 4.5147 -4.6202 -2.3877 54 1 2.3182 -3.4574 -2.2155 55 1 3.5917 -2.5913 -1.3225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878312583.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:40 Heat of formation + Delta-G solvation = -108.445714 kcal Electronic energy + Delta-G solvation = -31539.601001 eV Core-core repulsion = 27575.080756 eV Total energy + Delta-G solvation = -3964.520245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73688 -40.25552 -39.05070 -36.82467 -35.40601 -34.55338 -33.40115 -32.06200 -31.77048 -30.43370 -28.84060 -27.68920 -26.35815 -24.79411 -24.57212 -24.23952 -23.72669 -22.96468 -21.77088 -20.62982 -19.44561 -18.48710 -17.69459 -17.28259 -17.16403 -16.81634 -16.52040 -16.38791 -15.86296 -15.83080 -15.72926 -15.63637 -15.48939 -15.19381 -15.11826 -14.84583 -14.52761 -13.88158 -13.69141 -13.51683 -13.33683 -13.28275 -13.13678 -13.08507 -12.89238 -12.79168 -12.59291 -12.45364 -12.23693 -12.17919 -12.13932 -12.08549 -11.86623 -11.76675 -11.53559 -11.49498 -11.32328 -11.03774 -10.97660 -10.64923 -10.61670 -9.99261 -9.20241 -9.00355 -8.16960 -6.36004 1.33828 1.35295 1.48045 2.36246 2.81432 2.99819 3.00434 3.07435 3.38356 3.57467 3.67017 3.73982 3.87410 4.00137 4.09471 4.10048 4.15358 4.22206 4.27964 4.29375 4.36102 4.44233 4.48523 4.52257 4.57724 4.60951 4.64775 4.66861 4.73255 4.74161 4.75126 4.82613 4.86916 4.87646 4.93738 4.94896 5.04854 5.07374 5.11182 5.13327 5.16081 5.20724 5.23476 5.25920 5.32206 5.38389 5.46672 5.72519 6.02471 6.13697 6.14223 6.29139 6.30175 6.47553 6.51767 6.84902 7.35201 8.85642 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.002539 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.907095 B =11023.991717 C =11933.549415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.052 0.948 9 C 0.200 3.800 10 N -0.542 5.542 11 C 0.064 3.936 12 C 0.071 3.929 13 N -0.544 5.544 14 C 0.066 3.934 15 C 0.091 3.909 16 H 0.055 0.945 17 C -0.143 4.143 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.142 4.142 21 C 0.058 3.942 22 O -0.405 6.405 23 C 0.060 3.940 24 C -0.136 4.136 25 C 0.068 3.932 26 O -0.378 6.378 27 C 0.074 3.926 28 C 0.069 3.931 29 H 0.265 0.735 30 H 0.007 0.993 31 H 0.004 0.996 32 H 0.065 0.935 33 H 0.018 0.982 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.050 0.950 52 H 0.039 0.961 53 H 0.084 0.916 54 H 0.059 0.941 55 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.778 -18.665 -7.935 29.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.070 0.930 9 C 0.073 3.927 10 N -0.266 5.266 11 C -0.064 4.064 12 C -0.057 4.057 13 N -0.270 5.270 14 C -0.061 4.061 15 C 0.033 3.967 16 H 0.073 0.927 17 C -0.181 4.181 18 C -0.148 4.148 19 C -0.088 4.088 20 C -0.180 4.180 21 C -0.018 4.018 22 O -0.324 6.324 23 C -0.017 4.017 24 C -0.174 4.174 25 C -0.008 4.008 26 O -0.297 6.297 27 C -0.054 4.054 28 C -0.060 4.060 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.102 0.898 51 H 0.068 0.932 52 H 0.057 0.943 53 H 0.102 0.898 54 H 0.077 0.923 55 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 21.809 -18.391 -7.798 29.575 hybrid contribution -0.504 1.349 -0.059 1.441 sum 21.305 -17.042 -7.857 28.391 Atomic orbital electron populations 1.70064 1.07449 1.27805 1.51268 1.25792 0.95623 1.02756 0.94552 0.85530 0.78778 0.79518 0.78005 1.19634 1.20108 1.20119 1.21966 0.93187 0.93020 1.50970 0.92998 1.19398 0.91236 0.86814 0.95246 1.62641 1.17510 1.43845 1.02562 1.21957 0.94037 0.97020 0.93433 1.22084 0.94573 0.96212 0.92804 1.62051 1.18100 1.44597 1.02209 1.22189 0.94463 0.91897 0.97567 1.22226 0.92961 0.84610 0.96904 0.92697 1.22180 0.98622 0.98487 0.98844 1.21717 0.99439 0.96013 0.97628 1.21092 0.95359 0.96490 0.95909 1.22144 0.98562 1.00492 0.96753 1.22710 0.91170 0.98095 0.89824 1.87905 1.36675 1.92567 1.15286 1.22697 0.96022 0.97746 0.85200 1.22105 0.96283 0.99932 0.99071 1.22627 0.93122 0.98275 0.86826 1.88092 1.66759 1.37721 1.37150 1.22074 0.93247 0.96340 0.93757 1.21886 0.94622 0.96861 0.92612 0.92560 0.97476 0.97762 0.91619 0.96371 0.89172 0.93890 0.89861 0.92138 0.90593 0.89371 0.90130 0.91120 0.89563 0.91587 0.87962 0.91927 0.88491 0.91913 0.92454 0.90434 0.89792 0.93204 0.94261 0.89824 0.92254 0.96291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 2 C 0.01 0.70 5.46 84.65 0.46 1.16 16 3 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.55 -31.92 7.66 25.60 0.20 -31.72 16 8 H 0.05 3.04 5.82 -2.92 -0.02 3.03 16 9 C 0.20 10.94 5.14 85.56 0.44 11.38 16 10 N -0.54 -24.49 4.92 -900.31 -4.43 -28.91 16 11 C 0.06 2.61 5.32 86.31 0.46 3.07 16 12 C 0.07 2.20 5.62 86.31 0.48 2.68 16 13 N -0.54 -16.46 4.67 -895.73 -4.19 -20.64 16 14 C 0.07 1.45 4.83 86.31 0.42 1.87 16 15 C 0.09 1.80 2.09 30.62 0.06 1.86 16 16 H 0.06 1.13 6.28 -2.39 -0.01 1.11 16 17 C -0.14 -1.94 5.07 30.69 0.16 -1.79 16 18 C -0.11 -1.34 4.24 30.68 0.13 -1.21 16 19 C -0.09 -1.30 0.52 -52.13 -0.03 -1.32 16 20 C -0.14 -1.80 4.92 30.65 0.15 -1.65 16 21 C 0.06 0.71 6.57 72.02 0.47 1.18 16 22 O -0.41 -6.91 10.76 -148.98 -1.60 -8.52 16 23 C 0.06 0.83 6.57 72.02 0.47 1.30 16 24 C -0.14 -2.16 4.55 30.66 0.14 -2.02 16 25 C 0.07 1.35 5.55 71.97 0.40 1.75 16 26 O -0.38 -9.40 9.76 -148.98 -1.45 -10.85 16 27 C 0.07 2.34 5.12 86.31 0.44 2.78 16 28 C 0.07 2.87 5.23 86.31 0.45 3.32 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.00 0.25 8.11 -2.39 -0.02 0.23 16 32 H 0.07 2.62 8.12 -2.38 -0.02 2.60 16 33 H 0.02 0.84 6.78 -2.39 -0.02 0.82 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.04 6.56 -2.39 -0.02 1.02 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.81 5.04 -2.38 -0.01 0.80 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.06 0.61 6.69 -2.39 -0.02 0.60 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 47 H 0.06 0.71 6.54 -2.39 -0.02 0.70 16 48 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.08 1.32 6.11 -2.39 -0.01 1.30 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.08 2.42 6.02 -2.39 -0.01 2.41 16 54 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 55 H 0.02 0.90 6.61 -2.38 -0.02 0.88 16 Total: -1.00 -67.85 395.98 -3.20 -71.05 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.85 Total: 13.65 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.31 Total: -7.36 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -8.33 Total: -105.51 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -3.06 Total: -19.37 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -67.85 -3.20 -71.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878312583.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.391 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds