Wall clock time and date at job start Tue Mar 31 2020 21:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46702 * 299.99885 * 3 2 1 6 6 H 1.48495 * 109.47309 * 59.99903 * 3 2 1 7 7 C 1.37865 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00355 * 359.72784 * 7 2 1 10 10 N 1.46500 * 109.47520 * 180.27249 * 9 7 2 11 11 C 1.34777 * 120.00037 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00234 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99911 * 180.02562 * 11 10 9 14 14 N 1.46894 * 109.47341 * 179.97438 * 13 11 10 15 15 C 1.46852 * 111.00031 * 66.34751 * 14 13 11 16 16 C 1.53039 * 109.52514 * 185.84055 * 15 14 13 17 17 C 1.53113 * 109.27766 * 300.82083 * 16 15 14 18 18 C 1.53115 * 109.16086 * 57.65358 * 17 16 15 19 19 C 1.46852 * 111.00448 * 190.55664 * 14 13 11 20 20 H 1.08997 * 109.46027 * 294.17919 * 19 14 13 21 21 C 1.52997 * 109.45766 * 54.14229 * 19 14 13 22 22 C 1.53003 * 109.47052 * 67.41053 * 21 19 14 23 23 O 1.42904 * 109.47221 * 66.78722 * 22 21 19 24 24 C 1.52998 * 109.46881 * 306.78552 * 22 21 19 25 25 C 1.53003 * 109.46881 * 180.02562 * 24 22 21 26 26 C 1.52995 * 109.47138 * 60.00399 * 25 24 22 27 27 C 1.52998 * 109.46908 * 299.99584 * 26 25 24 28 28 C 1.52992 * 109.47212 * 186.78579 * 22 21 19 29 29 H 0.96998 * 119.99875 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47033 * 300.27321 * 9 7 2 31 31 H 1.09002 * 109.47070 * 60.27168 * 9 7 2 32 32 H 0.97003 * 119.99555 * 359.97438 * 10 9 7 33 33 H 1.09004 * 109.47046 * 300.00049 * 13 11 10 34 34 H 1.08994 * 109.47306 * 59.99639 * 13 11 10 35 35 H 1.08999 * 109.46252 * 305.85919 * 15 14 13 36 36 H 1.09002 * 109.46036 * 65.83439 * 15 14 13 37 37 H 1.09006 * 109.50231 * 60.76133 * 16 15 14 38 38 H 1.09002 * 109.49922 * 180.87661 * 16 15 14 39 39 H 1.09003 * 109.52277 * 177.55645 * 17 16 15 40 40 H 1.08998 * 109.52505 * 297.74809 * 17 16 15 41 41 H 1.09004 * 109.50465 * 62.29049 * 18 17 16 42 42 H 1.09003 * 109.50432 * 182.36501 * 18 17 16 43 43 H 1.09001 * 109.46904 * 187.40032 * 21 19 14 44 44 H 1.08998 * 109.47283 * 307.41000 * 21 19 14 45 45 H 0.96699 * 113.99846 * 175.05931 * 23 22 21 46 46 H 1.09001 * 109.47246 * 299.99665 * 24 22 21 47 47 H 1.09006 * 109.47266 * 60.00513 * 24 22 21 48 48 H 1.09005 * 109.47606 * 299.99714 * 25 24 22 49 49 H 1.09003 * 109.46804 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.46937 * 180.02562 * 26 25 24 51 51 H 1.08992 * 109.47671 * 59.99763 * 26 25 24 52 52 H 1.09003 * 109.47272 * 300.00040 * 27 26 25 53 53 H 1.08998 * 109.47287 * 180.02562 * 27 26 25 54 54 H 1.08997 * 109.47504 * 300.00095 * 28 22 21 55 55 H 1.09001 * 109.47310 * 60.00093 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0073 10 7 2.2031 -3.6126 0.0131 11 6 1.7538 -4.8833 0.0202 12 8 0.5615 -5.1049 0.0214 13 6 2.7331 -6.0287 0.0268 14 7 1.9987 -7.3008 0.0345 15 6 1.2589 -7.4890 -1.2200 16 6 0.3939 -8.7475 -1.1198 17 6 1.2917 -9.9578 -0.8485 18 6 2.0868 -9.7154 0.4374 19 6 2.9028 -8.4290 0.2921 20 1 3.5998 -8.5330 -0.5393 21 6 3.6837 -8.1720 1.5825 22 6 2.7252 -8.2089 2.7746 23 8 2.2204 -9.5356 2.9390 24 6 1.5615 -7.2479 2.5232 25 6 0.6034 -7.2843 3.7155 26 6 1.3496 -6.8613 4.9825 27 6 2.5132 -7.8223 5.2338 28 6 3.4709 -7.7864 4.0418 29 1 -0.4850 0.8400 0.0004 30 1 0.6244 -2.5522 0.8976 31 1 0.6244 -2.5615 -0.8824 32 1 3.1568 -3.4353 0.0118 33 1 3.3599 -5.9759 -0.8635 34 1 3.3597 -5.9659 0.9164 35 1 0.6213 -6.6233 -1.3990 36 1 1.9637 -7.5977 -2.0444 37 1 -0.3204 -8.6341 -0.3043 38 1 -0.1431 -8.8955 -2.0568 39 1 0.6758 -10.8497 -0.7332 40 1 1.9803 -10.0947 -1.6822 41 1 1.3991 -9.6173 1.2775 42 1 2.7589 -10.5553 0.6135 43 1 4.4458 -8.9414 1.7053 44 1 4.1605 -7.1932 1.5298 45 1 1.6647 -9.6508 3.7220 46 1 1.9466 -6.2359 2.3979 47 1 1.0301 -7.5489 1.6203 48 1 0.2182 -8.2962 3.8414 49 1 -0.2259 -6.5999 3.5363 50 1 0.6671 -6.8877 5.8320 51 1 1.7347 -5.8495 4.8567 52 1 2.1281 -8.8342 5.3597 53 1 3.0446 -7.5213 6.1366 54 1 4.3000 -8.4709 4.2209 55 1 3.8560 -6.7744 3.9165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887037247.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:10 Heat of formation + Delta-G solvation = -109.880601 kcal Electronic energy + Delta-G solvation = -32718.019409 eV Core-core repulsion = 28753.436943 eV Total energy + Delta-G solvation = -3964.582466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.79894 -40.28298 -38.99127 -36.10094 -35.61949 -34.74613 -34.27748 -33.42539 -31.62542 -30.47114 -30.01126 -28.09255 -27.04413 -24.84618 -23.90710 -23.51608 -23.15840 -21.59521 -21.20296 -20.44949 -20.17366 -18.91445 -17.90250 -17.54249 -17.26081 -16.73131 -16.46323 -16.26692 -15.86444 -15.72697 -15.30121 -15.18199 -14.92088 -14.78517 -14.62597 -14.45242 -14.16878 -14.02132 -13.84657 -13.79362 -13.63364 -13.05781 -12.90358 -12.87068 -12.77386 -12.64217 -12.57861 -12.46475 -12.36676 -12.22157 -12.08708 -11.80437 -11.63572 -11.45288 -11.40164 -11.30651 -11.20597 -10.99835 -10.80643 -10.76500 -10.46904 -10.16901 -9.74506 -8.81822 -8.29295 -6.45620 1.42194 1.43133 1.56525 1.86673 2.28476 2.47657 3.05642 3.06646 3.50570 3.72262 3.82119 3.92101 3.97904 4.04481 4.08366 4.09710 4.22262 4.29425 4.34117 4.39135 4.48251 4.53531 4.57896 4.59714 4.68721 4.71076 4.77963 4.85105 4.87892 4.96453 5.02509 5.02739 5.09216 5.12639 5.15463 5.22876 5.23508 5.24946 5.26533 5.30382 5.39499 5.41554 5.43264 5.51292 5.54539 5.64437 5.73251 5.84657 5.86679 6.06491 6.08354 6.29275 6.66423 6.98887 6.99852 7.24448 7.58711 8.83038 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.003396 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.432700 B = 8243.897826 C = 9528.723172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.272 3.728 10 N -0.713 5.713 11 C 0.498 3.502 12 O -0.575 6.575 13 C 0.037 3.963 14 N -0.507 5.507 15 C 0.050 3.950 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.108 4.108 19 C 0.088 3.912 20 H 0.044 0.956 21 C -0.108 4.108 22 C 0.153 3.847 23 O -0.552 6.552 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.145 4.145 29 H 0.268 0.732 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.405 0.595 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.373 0.627 46 H 0.033 0.967 47 H 0.112 0.888 48 H 0.071 0.929 49 H 0.031 0.969 50 H 0.063 0.937 51 H 0.041 0.959 52 H 0.076 0.924 53 H 0.070 0.930 54 H 0.077 0.923 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.474 -21.949 5.842 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.149 3.851 10 N -0.365 5.365 11 C 0.284 3.716 12 O -0.455 6.455 13 C -0.093 4.093 14 N -0.232 5.232 15 C -0.078 4.078 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.146 4.146 19 C -0.019 4.019 20 H 0.062 0.938 21 C -0.145 4.145 22 C 0.113 3.887 23 O -0.360 6.360 24 C -0.183 4.183 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.151 4.151 28 C -0.183 4.183 29 H 0.077 0.923 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.223 0.777 46 H 0.052 0.948 47 H 0.130 0.870 48 H 0.090 0.910 49 H 0.049 0.951 50 H 0.082 0.918 51 H 0.060 0.940 52 H 0.095 0.905 53 H 0.089 0.911 54 H 0.096 0.904 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.478 -22.074 5.666 24.682 hybrid contribution 0.235 1.748 -0.263 1.783 sum 9.713 -20.327 5.403 23.167 Atomic orbital electron populations 1.70151 1.08268 1.28408 1.50168 1.26043 0.95732 1.03834 0.93915 0.85146 0.79148 0.77471 0.77667 1.17602 1.20486 1.20482 1.21656 0.94262 0.90672 1.52590 0.89923 1.18439 0.88573 0.84314 0.93733 1.46198 1.10956 1.05647 1.73651 1.21216 0.90013 0.84475 0.75848 1.90619 1.18912 1.85036 1.50919 1.22106 0.94409 0.88292 1.04543 1.62026 1.26829 1.00404 1.33933 1.22176 0.96889 0.99187 0.89532 1.21480 0.97844 0.93876 1.01376 1.21626 0.98408 0.97153 0.98361 1.21876 0.99624 0.94776 0.98277 1.21709 0.92830 0.90818 0.96548 0.93799 1.21862 0.97230 1.02959 0.92441 1.20883 0.92192 0.82244 0.93420 1.86620 1.70440 1.29348 1.49633 1.22661 0.97544 0.98328 0.99805 1.21580 0.98091 1.00883 0.95589 1.21577 0.97865 0.98975 0.97540 1.21479 0.95872 0.99779 0.97996 1.22216 0.98878 1.01973 0.95211 0.92327 0.99808 0.99793 0.75982 0.90483 0.85764 0.92422 0.94986 0.92814 0.91482 0.91255 0.92349 0.88490 0.91160 0.89342 0.90023 0.77735 0.94810 0.87039 0.91009 0.95056 0.91779 0.93968 0.90533 0.91145 0.90393 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.44 0.28 -56.30 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.98 42.48 29.54 68.60 2.03 44.50 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.25 9.28 25.60 0.24 -30.01 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 15.04 5.43 85.63 0.46 15.51 16 10 N -0.71 -30.09 5.55 -466.79 -2.59 -32.68 16 11 C 0.50 19.62 7.12 87.66 0.62 20.25 16 12 O -0.58 -27.84 14.37 -3.02 -0.04 -27.88 16 13 C 0.04 1.00 4.07 85.56 0.35 1.35 16 14 N -0.51 -13.20 0.92 -875.66 -0.80 -14.01 16 15 C 0.05 1.41 5.11 86.33 0.44 1.85 16 16 C -0.11 -2.63 6.09 30.65 0.19 -2.44 16 17 C -0.12 -2.29 6.00 30.67 0.18 -2.10 16 18 C -0.11 -2.12 4.03 30.64 0.12 -1.99 16 19 C 0.09 1.78 2.04 44.93 0.09 1.88 16 20 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 21 C -0.11 -1.90 4.39 30.59 0.13 -1.77 16 22 C 0.15 2.88 0.68 -10.80 -0.01 2.88 16 23 O -0.55 -9.62 9.27 -148.98 -1.38 -11.00 16 24 C -0.15 -3.76 3.30 30.59 0.10 -3.66 16 25 C -0.12 -3.06 5.67 30.59 0.17 -2.88 16 26 C -0.12 -2.59 5.92 30.59 0.18 -2.41 16 27 C -0.11 -1.81 5.67 30.58 0.17 -1.63 16 28 C -0.15 -2.43 4.94 30.57 0.15 -2.28 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H 0.41 14.14 8.32 -92.71 -0.77 13.36 16 33 H 0.08 1.80 8.12 -2.38 -0.02 1.78 16 34 H 0.12 2.86 4.71 -2.39 -0.01 2.84 16 35 H 0.06 2.11 5.83 -2.39 -0.01 2.10 16 36 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 2.16 4.59 -2.39 -0.01 2.15 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.37 5.69 -2.39 -0.01 1.36 16 45 H 0.37 5.15 5.72 -74.06 -0.42 4.73 16 46 H 0.03 1.04 6.19 -2.39 -0.01 1.03 16 47 H 0.11 3.39 4.56 -2.38 -0.01 3.38 16 48 H 0.07 1.47 6.90 -2.38 -0.02 1.46 16 49 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.08 0.97 6.67 -2.39 -0.02 0.95 16 53 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 55 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.76 392.92 1.26 -68.50 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.30 Total: 35.65 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.07 Total: -6.78 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.11 Total: -102.99 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.42 Total: -38.88 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.76 1.26 -68.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887037247.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.383 kcal (2) G-P(sol) polarization free energy of solvation -69.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds