Wall clock time and date at job start Tue Mar 31 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99988 * 2 1 4 4 H 1.48506 * 109.47106 * 240.00688 * 3 2 1 5 5 H 1.48502 * 109.46862 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47165 * 120.00421 * 3 2 1 7 7 C 1.37876 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00412 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46619 * 300.00413 * 9 7 2 11 11 O 1.42902 * 109.47230 * 59.99594 * 9 7 2 12 12 C 1.52998 * 109.47485 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47359 * 180.02562 * 12 9 7 14 14 C 1.46897 * 111.00364 * 190.00017 * 13 12 9 15 15 C 1.53230 * 109.34186 * 187.25323 * 14 13 12 16 16 N 1.47082 * 108.51951 * 306.16425 * 15 14 13 17 17 C 1.34777 * 120.87981 * 231.18555 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72731 * 17 16 15 20 20 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 21 21 C 1.52997 * 109.47000 * 179.97438 * 20 19 17 22 22 C 1.52993 * 109.47610 * 294.99798 * 21 20 19 23 23 C 1.52997 * 109.47610 * 180.02562 * 22 21 20 24 24 C 1.53007 * 109.46884 * 60.00099 * 23 22 21 25 25 C 1.53006 * 109.47016 * 300.00416 * 24 23 22 26 26 C 1.52992 * 109.47158 * 59.99906 * 25 24 23 27 27 C 1.47079 * 118.23776 * 51.46441 * 16 15 14 28 28 C 1.46903 * 110.99692 * 314.29770 * 13 12 9 29 29 H 0.96994 * 119.99995 * 359.97438 * 1 2 3 30 30 H 0.96707 * 113.99314 * 60.00848 * 11 9 7 31 31 H 1.09000 * 109.47361 * 59.99303 * 12 9 7 32 32 H 1.09001 * 109.46613 * 299.99614 * 12 9 7 33 33 H 1.09007 * 109.49363 * 67.28772 * 14 13 12 34 34 H 1.09006 * 109.48829 * 307.21036 * 14 13 12 35 35 H 1.09007 * 109.62838 * 186.45836 * 15 14 13 36 36 H 1.08995 * 109.63343 * 65.87824 * 15 14 13 37 37 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 38 38 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 39 39 H 1.09000 * 109.46887 * 300.00372 * 20 19 17 40 40 H 1.08998 * 109.46846 * 59.99549 * 20 19 17 41 41 H 1.09001 * 109.47126 * 55.00303 * 21 20 19 42 42 H 1.09001 * 109.47288 * 300.00405 * 22 21 20 43 43 H 1.09007 * 109.47011 * 59.99931 * 22 21 20 44 44 H 1.09001 * 109.47126 * 300.00504 * 23 22 21 45 45 H 1.08991 * 109.47749 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47017 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.46908 * 60.00271 * 24 23 22 48 48 H 1.08999 * 109.46427 * 299.99764 * 25 24 23 49 49 H 1.09000 * 109.46479 * 180.02562 * 25 24 23 50 50 H 1.09004 * 109.47307 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.47252 * 59.99847 * 26 25 24 52 52 H 1.08993 * 109.62875 * 68.24376 * 27 16 15 53 53 H 1.08998 * 109.63018 * 188.83153 * 27 16 15 54 54 H 1.09000 * 109.49258 * 292.70544 * 28 13 12 55 55 H 1.08999 * 109.49499 * 52.76379 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5109 -4.9343 -0.0012 14 6 2.4171 -6.0656 0.2370 15 6 1.6499 -7.3786 0.0496 16 7 0.4551 -7.3480 0.9067 17 6 0.1799 -8.3657 1.7464 18 8 0.9221 -9.3232 1.8027 19 6 -1.0467 -8.3108 2.6203 20 6 -1.1205 -9.5771 3.4759 21 6 -2.3654 -9.5210 4.3635 22 6 -2.2304 -8.3672 5.3591 23 6 -3.4751 -8.3115 6.2471 24 6 -3.6162 -9.6300 7.0106 25 6 -3.7512 -10.7839 6.0149 26 6 -2.5065 -10.8395 5.1269 27 6 -0.4347 -6.1802 0.8187 28 6 0.4178 -4.9115 0.9801 29 1 -0.4850 0.8400 0.0004 30 1 0.9209 -2.5292 -1.9984 31 1 2.8721 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 2.8052 -6.0129 1.2543 34 1 3.2449 -6.0237 -0.4711 35 1 2.2844 -8.2175 0.3357 36 1 1.3499 -7.4819 -0.9932 37 1 -0.9918 -7.4366 3.2691 38 1 -1.9363 -8.2431 1.9941 39 1 -1.1753 -10.4512 2.8271 40 1 -0.2309 -9.6447 4.1021 41 1 -3.2475 -9.3640 3.7427 42 1 -1.3484 -8.5242 5.9799 43 1 -2.1294 -7.4279 4.8152 44 1 -4.3574 -8.1547 5.6266 45 1 -3.3788 -7.4899 6.9567 46 1 -4.5032 -9.5905 7.6429 47 1 -2.7339 -9.7868 7.6310 48 1 -4.6335 -10.6270 5.3944 49 1 -3.8522 -11.7231 6.5588 50 1 -2.6028 -11.6612 4.4173 51 1 -1.6242 -10.9963 5.7474 52 1 -0.9311 -6.1704 -0.1516 53 1 -1.1791 -6.2263 1.6136 54 1 0.8337 -4.8750 1.9870 55 1 -0.2043 -4.0326 0.8113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929318202.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:42 Heat of formation + Delta-G solvation = -129.158207 kcal Electronic energy + Delta-G solvation = -30330.672909 eV Core-core repulsion = 26365.254503 eV Total energy + Delta-G solvation = -3965.418406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.33766 -39.79567 -39.22598 -37.42416 -35.29367 -34.82356 -34.18578 -32.36592 -31.61129 -30.77689 -30.16645 -28.20650 -26.05737 -25.16514 -24.73433 -23.45223 -22.69368 -21.81565 -21.33546 -20.59091 -19.77601 -19.12517 -18.12653 -17.00684 -16.87671 -16.66613 -16.48237 -16.21198 -16.08583 -15.78276 -15.68388 -15.30223 -15.09191 -15.05821 -14.82699 -14.61282 -14.51460 -14.25919 -13.78804 -13.50082 -13.22786 -13.08978 -12.94818 -12.88832 -12.79967 -12.73615 -12.66807 -12.47980 -12.29128 -12.21943 -12.16569 -12.00434 -11.95049 -11.93869 -11.65078 -11.27791 -10.95097 -10.91138 -10.76986 -10.75435 -10.64129 -10.08497 -9.77258 -9.18274 -8.12550 -6.37093 1.42061 1.42329 1.50480 1.59830 1.96492 2.39147 2.98646 3.14163 3.46384 3.76275 3.81010 3.88617 3.96719 3.97690 4.11750 4.13963 4.21753 4.24179 4.26440 4.37887 4.41943 4.45279 4.49807 4.57105 4.61488 4.63075 4.64778 4.69743 4.70355 4.72215 4.76057 4.84215 4.85590 4.88738 5.01740 5.06447 5.08511 5.12157 5.19289 5.25040 5.31108 5.36880 5.37993 5.45416 5.45898 5.53346 5.62129 5.66689 5.77126 5.94452 6.16094 6.21045 6.41385 6.74439 7.12945 7.36415 7.61938 8.91218 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.002224 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.986635 B =12589.271763 C =14071.857320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.234 3.766 10 H 0.033 0.967 11 O -0.567 6.567 12 C 0.046 3.954 13 N -0.531 5.531 14 C 0.044 3.956 15 C 0.121 3.879 16 N -0.614 5.614 17 C 0.510 3.490 18 O -0.587 6.587 19 C -0.136 4.136 20 C -0.091 4.091 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.114 4.114 27 C 0.122 3.878 28 C 0.039 3.961 29 H 0.261 0.739 30 H 0.354 0.646 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.022 0.978 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.054 0.946 52 H 0.082 0.918 53 H 0.114 0.886 54 H 0.023 0.977 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 -19.312 8.957 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.173 4.173 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.629 4.629 8 H 0.073 0.927 9 C 0.176 3.824 10 H 0.050 0.950 11 O -0.370 6.370 12 C -0.081 4.081 13 N -0.255 5.255 14 C -0.085 4.085 15 C -0.002 4.002 16 N -0.347 5.347 17 C 0.300 3.700 18 O -0.468 6.468 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.099 4.099 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.152 4.152 27 C 0.000 4.000 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.199 0.801 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.101 0.899 53 H 0.132 0.868 54 H 0.041 0.959 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.114 -19.819 8.988 22.895 hybrid contribution 1.594 1.407 0.373 2.158 sum -5.520 -18.412 9.361 21.380 Atomic orbital electron populations 1.70174 1.07368 1.27379 1.48208 1.25799 0.95480 1.02540 0.93457 0.85695 0.78452 0.78958 0.78947 1.19366 1.20995 1.19660 1.22011 0.93452 0.92962 1.54447 0.92663 1.19255 0.87781 0.89749 0.85612 0.94975 1.86476 1.38499 1.96379 1.15693 1.22720 0.96453 0.89330 0.99638 1.61962 1.11504 1.02641 1.49421 1.22497 0.95602 0.90670 0.99682 1.21626 0.86745 0.96842 0.94952 1.48383 1.25760 1.20079 1.40491 1.21381 0.87800 0.81067 0.79709 1.90645 1.52263 1.34536 1.69309 1.21831 0.95576 1.01722 0.98433 1.21304 0.98151 0.96133 0.97301 1.21138 0.97357 0.95380 0.95982 1.21668 0.98124 0.98353 0.97481 1.21537 0.98117 0.97472 0.98620 1.21552 1.01664 0.94790 0.97810 1.21521 0.97856 0.98481 0.97624 1.21567 0.98275 0.96880 0.98477 1.22030 0.91804 0.82018 1.04196 1.22603 0.94436 0.99243 0.92668 0.92963 0.80120 0.96097 0.91015 0.95967 0.88666 0.89424 0.90181 0.87499 0.86654 0.92251 0.93030 0.90223 0.92784 0.91486 0.91605 0.92056 0.91603 0.92544 0.91675 0.91695 0.91916 0.92678 0.89947 0.86775 0.95916 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.48 12.84 21.45 0.28 -51.21 16 2 C 0.03 1.64 5.40 84.65 0.46 2.09 16 3 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.59 -31.32 8.76 25.60 0.22 -31.09 16 8 H 0.06 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.23 11.26 2.11 29.85 0.06 11.33 16 10 H 0.03 1.72 6.18 -2.38 -0.01 1.70 16 11 O -0.57 -27.82 12.41 -148.98 -1.85 -29.67 16 12 C 0.05 1.82 4.87 86.30 0.42 2.24 16 13 N -0.53 -17.83 4.64 -894.32 -4.15 -21.98 16 14 C 0.04 1.25 5.58 86.38 0.48 1.74 16 15 C 0.12 3.18 6.60 86.35 0.57 3.75 16 16 N -0.61 -15.79 3.00 -817.05 -2.45 -18.25 16 17 C 0.51 13.24 7.71 87.66 0.68 13.91 16 18 O -0.59 -19.34 15.43 -3.04 -0.05 -19.38 16 19 C -0.14 -2.44 3.82 29.85 0.11 -2.33 16 20 C -0.09 -1.65 3.97 30.59 0.12 -1.53 16 21 C -0.08 -1.13 2.19 -10.79 -0.02 -1.16 16 22 C -0.12 -1.69 4.96 30.59 0.15 -1.54 16 23 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 24 C -0.12 -1.47 5.92 30.60 0.18 -1.28 16 25 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 26 C -0.11 -1.57 5.20 30.59 0.16 -1.41 16 27 C 0.12 2.96 6.54 86.51 0.57 3.53 16 28 C 0.04 1.26 5.06 86.54 0.44 1.70 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.35 15.75 9.04 -74.05 -0.67 15.08 16 31 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.10 2.44 8.11 -2.38 -0.02 2.42 16 35 H 0.09 2.36 7.06 -2.38 -0.02 2.35 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 1.70 6.09 -2.38 -0.01 1.69 16 38 H 0.12 1.59 7.99 -2.39 -0.02 1.57 16 39 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.93 6.56 -2.38 -0.02 0.91 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.11 2.07 6.01 -2.39 -0.01 2.06 16 54 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 55 H 0.08 3.17 5.58 -2.39 -0.01 3.16 16 Total: -1.00 -65.03 414.81 -1.06 -66.09 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.18 Total: 32.76 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.96 Total: -2.64 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -6.33 Total: -91.44 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.90 Total: -49.05 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -65.03 -1.06 -66.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929318202.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.071 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds