Wall clock time and date at job start Tue Mar 31 2020 21:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99792 * 2 1 4 4 H 1.48496 * 109.46923 * 269.99795 * 3 2 1 5 5 H 1.48500 * 109.47306 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.47134 * 150.00117 * 3 2 1 7 7 C 1.38813 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00346 * 168.70425 * 7 2 1 9 9 N 1.36937 * 119.99775 * 348.70136 * 7 2 1 10 10 C 1.47172 * 126.10025 * 168.17991 * 9 7 2 11 11 C 1.53593 * 105.65151 * 149.72195 * 10 9 7 12 12 H 1.09001 * 108.72725 * 271.02229 * 11 10 9 13 13 C 1.50954 * 111.30557 * 150.29373 * 11 10 9 14 14 C 1.53171 * 111.95776 * 178.50614 * 13 11 10 15 15 N 1.49727 * 105.59806 * 99.83237 * 14 13 11 16 16 C 1.34771 * 122.75609 * 111.57488 * 15 14 13 17 17 O 1.21284 * 119.99843 * 5.33150 * 16 15 14 18 18 C 1.50702 * 120.00061 * 185.32946 * 16 15 14 19 19 H 1.09003 * 109.47336 * 34.39065 * 18 16 15 20 20 C 1.52994 * 109.47340 * 154.39732 * 18 16 15 21 21 C 1.52995 * 109.47267 * 180.02562 * 20 18 16 22 22 C 1.52999 * 109.47130 * 299.99570 * 21 20 18 23 23 C 1.53005 * 109.47014 * 60.00006 * 22 21 20 24 24 H 1.09001 * 109.47050 * 59.99909 * 23 22 21 25 25 F 1.39902 * 109.47072 * 179.97438 * 23 22 21 26 26 C 1.53001 * 109.46931 * 300.00143 * 23 22 21 27 27 C 1.43642 * 114.48371 * 291.84441 * 15 14 13 28 28 C 1.50694 * 115.01705 * 57.70375 * 27 15 14 29 29 C 1.51856 * 112.39435 * 275.13332 * 28 27 15 30 30 H 1.08995 * 111.46704 * 322.87809 * 29 28 27 31 31 C 1.46775 * 126.09756 * 348.16030 * 9 7 2 32 32 H 0.97001 * 120.00001 * 0.02562 * 1 2 3 33 33 H 1.09005 * 110.21277 * 30.67931 * 10 9 7 34 34 H 1.08999 * 110.21130 * 268.76405 * 10 9 7 35 35 H 1.08995 * 108.98811 * 57.86725 * 13 11 10 36 36 H 1.08997 * 108.98711 * 299.14349 * 13 11 10 37 37 H 1.09007 * 110.21194 * 340.81492 * 14 13 11 38 38 H 1.08994 * 110.21678 * 218.85470 * 14 13 11 39 39 H 1.09000 * 109.47084 * 299.99879 * 20 18 16 40 40 H 1.09003 * 109.47451 * 59.99403 * 20 18 16 41 41 H 1.09002 * 109.47174 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47085 * 59.99753 * 21 20 18 43 43 H 1.09001 * 109.47286 * 300.00060 * 22 21 20 44 44 H 1.09005 * 109.47493 * 180.02562 * 22 21 20 45 45 H 1.08995 * 109.46649 * 179.97438 * 26 23 22 46 46 H 1.09001 * 109.47062 * 299.99759 * 26 23 22 47 47 H 1.09006 * 108.42294 * 179.10789 * 27 15 14 48 48 H 1.09000 * 108.43070 * 296.36243 * 27 15 14 49 49 H 1.09003 * 108.93962 * 154.33228 * 28 27 15 50 50 H 1.08996 * 108.72267 * 35.79217 * 28 27 15 51 51 H 1.08999 * 109.78315 * 80.70434 * 31 9 7 52 52 H 1.09003 * 109.78134 * 319.91840 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0747 -1.2112 -0.1827 9 7 1.3456 -2.3764 0.2334 10 6 1.8816 -3.7316 0.0283 11 6 1.1809 -4.6165 1.0699 12 1 1.7673 -4.6069 1.9887 13 6 1.0386 -6.0362 0.5771 14 6 0.3742 -6.9405 1.6196 15 7 -1.0584 -7.0541 1.1995 16 6 -1.5947 -8.2019 0.7399 17 8 -0.9387 -9.2219 0.7435 18 6 -3.0097 -8.2179 0.2214 19 1 -3.2269 -7.2701 -0.2713 20 6 -3.1729 -9.3626 -0.7805 21 6 -4.6091 -9.3784 -1.3073 22 6 -5.5782 -9.5799 -0.1406 23 6 -5.4150 -8.4352 0.8614 24 1 -5.6317 -7.4874 0.3686 25 9 -6.3015 -8.6191 1.9280 26 6 -3.9786 -8.4194 1.3882 27 6 -1.8126 -5.8377 1.3209 28 6 -1.2613 -4.6664 0.5495 29 6 -0.1851 -3.9215 1.3195 30 1 -0.4134 -3.8792 2.3844 31 6 -0.0283 -2.5081 0.7325 32 1 -0.4850 0.8400 -0.0004 33 1 2.9593 -3.7391 0.1917 34 1 1.6502 -4.0798 -0.9784 35 1 2.0273 -6.4312 0.3436 36 1 0.4346 -6.0378 -0.3302 37 1 0.4419 -6.4877 2.6088 38 1 0.8454 -7.9233 1.6207 39 1 -2.4829 -9.2189 -1.6119 40 1 -2.9556 -10.3104 -0.2878 41 1 -4.7253 -10.1937 -2.0214 42 1 -4.8259 -8.4306 -1.8001 43 1 -5.3614 -10.5277 0.3522 44 1 -6.6015 -9.5917 -0.5159 45 1 -3.8623 -7.6036 2.1016 46 1 -3.7619 -9.3672 1.8810 47 1 -2.8294 -6.0269 0.9764 48 1 -1.8559 -5.5628 2.3748 49 1 -2.0750 -3.9772 0.3233 50 1 -0.8378 -5.0317 -0.3860 51 1 -0.7335 -2.3688 -0.0869 52 1 -0.2120 -1.7643 1.5080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946590770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:32 Heat of formation + Delta-G solvation = -94.731755 kcal Electronic energy + Delta-G solvation = -31073.457008 eV Core-core repulsion = 26986.071140 eV Total energy + Delta-G solvation = -4087.385868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.59968 -41.74522 -40.22743 -38.28713 -37.27909 -34.91905 -33.55720 -32.75517 -31.92183 -31.08561 -29.08845 -28.85932 -26.28178 -24.92771 -24.19705 -23.56549 -23.15771 -22.11513 -21.21091 -20.15503 -19.68791 -18.86797 -18.30234 -17.40321 -16.91609 -16.80629 -16.56507 -16.35974 -16.18633 -15.90974 -15.66475 -15.25320 -14.92137 -14.88075 -14.64092 -14.46063 -14.27605 -13.92681 -13.79929 -13.65162 -13.46886 -13.20766 -13.11294 -12.96777 -12.73351 -12.62024 -12.47709 -12.30337 -12.24574 -12.11134 -12.01979 -11.84428 -11.74557 -11.65027 -11.61243 -11.31740 -11.21401 -11.14932 -10.97270 -10.66979 -10.56312 -9.65700 -8.85152 -7.88976 -5.22522 1.45585 1.46738 1.55362 1.56136 1.95918 2.49473 3.29715 3.31828 3.50422 3.57620 3.64082 3.73920 3.85165 3.87068 3.91373 3.97944 4.06084 4.06641 4.14400 4.17454 4.29423 4.33401 4.37658 4.52223 4.54553 4.56272 4.64201 4.68567 4.72182 4.80038 4.88576 4.90053 4.95955 5.01751 5.03172 5.06779 5.08902 5.16877 5.17838 5.21833 5.22994 5.26862 5.32625 5.43381 5.46554 5.53253 5.57570 5.76361 5.81397 6.22069 6.52577 7.10398 7.12974 7.78480 8.46582 9.23321 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002575 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.958190 B =10870.486612 C =11628.207600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.622 5.622 10 C 0.133 3.867 11 C -0.082 4.082 12 H 0.070 0.930 13 C -0.115 4.115 14 C 0.117 3.883 15 N -0.606 5.606 16 C 0.525 3.475 17 O -0.580 6.580 18 C -0.098 4.098 19 H 0.116 0.884 20 C -0.104 4.104 21 C -0.109 4.109 22 C -0.144 4.144 23 C 0.091 3.909 24 H 0.106 0.894 25 F -0.228 7.228 26 C -0.130 4.130 27 C 0.109 3.891 28 C -0.119 4.119 29 C -0.092 4.092 30 H 0.084 0.916 31 C 0.187 3.813 32 H 0.248 0.752 33 H 0.041 0.959 34 H 0.010 0.990 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.003 0.997 52 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 -19.260 1.356 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.347 5.347 10 C 0.008 3.992 11 C -0.102 4.102 12 H 0.088 0.912 13 C -0.153 4.153 14 C -0.005 4.005 15 N -0.337 5.337 16 C 0.315 3.685 17 O -0.459 6.459 18 C -0.119 4.119 19 H 0.134 0.866 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.182 4.182 23 C 0.055 3.945 24 H 0.124 0.876 25 F -0.209 7.209 26 C -0.169 4.169 27 C -0.015 4.015 28 C -0.157 4.157 29 C -0.111 4.111 30 H 0.102 0.898 31 C 0.062 3.938 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.021 0.979 52 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -10.674 -19.600 1.364 22.360 hybrid contribution 0.685 1.449 -0.043 1.603 sum -9.989 -18.151 1.321 20.760 Atomic orbital electron populations 1.70153 1.06269 1.25491 1.57232 1.25631 0.96481 1.00974 1.02365 0.85163 0.77782 0.79353 0.77514 1.21232 1.21812 1.19642 1.19370 0.91806 0.84410 1.42032 0.90654 1.44671 1.13167 1.00940 1.75952 1.21469 0.96660 0.85076 0.96019 1.21668 0.96165 0.93782 0.98563 0.91176 1.21574 1.01547 0.93093 0.99085 1.22275 0.79970 1.00092 0.98116 1.48191 1.12545 1.09735 1.63271 1.20896 0.89455 0.81939 0.76204 1.90663 1.64330 1.33538 1.57407 1.21293 0.90049 1.03070 0.97532 0.86563 1.21423 0.97952 0.97251 0.97542 1.21456 0.92139 1.04000 0.97049 1.22148 1.01565 0.98091 0.96410 1.21714 0.86375 1.01740 0.84639 0.87593 1.92795 1.70977 1.97043 1.60089 1.22022 0.93421 1.04084 0.97337 1.20642 0.95853 0.83526 1.01492 1.21359 0.98428 0.96613 0.99327 1.22099 0.94973 0.94394 0.99624 0.89817 1.20888 0.85405 0.92735 0.94808 0.94284 0.94107 0.97237 0.90754 0.91538 0.89111 0.89730 0.91690 0.92039 0.89735 0.89988 0.91316 0.89472 0.89618 0.91290 0.88190 0.90565 0.90662 0.91968 0.97876 0.96886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.02 10.85 21.65 0.23 -55.78 16 2 C -0.06 -3.43 5.38 84.86 0.46 -2.97 16 3 Si 0.97 45.43 29.57 68.60 2.03 47.46 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.25 -13.89 10.25 84.03 0.86 -13.02 16 8 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 9 N -0.62 -31.68 3.37 -696.79 -2.35 -34.03 16 10 C 0.13 5.38 6.71 86.45 0.58 5.96 16 11 C -0.08 -2.54 2.61 -10.48 -0.03 -2.57 16 12 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.11 -2.87 4.57 29.99 0.14 -2.73 16 14 C 0.12 2.59 6.27 85.81 0.54 3.13 16 15 N -0.61 -12.91 2.67 -824.43 -2.20 -15.11 16 16 C 0.53 12.00 6.86 87.66 0.60 12.60 16 17 O -0.58 -17.52 15.80 -3.04 -0.05 -17.57 16 18 C -0.10 -1.56 1.67 -11.54 -0.02 -1.58 16 19 H 0.12 1.45 6.68 -2.39 -0.02 1.43 16 20 C -0.10 -1.60 4.74 30.59 0.15 -1.45 16 21 C -0.11 -1.10 5.92 30.59 0.18 -0.92 16 22 C -0.14 -1.59 5.66 30.60 0.17 -1.42 16 23 C 0.09 1.18 3.87 30.60 0.12 1.30 16 24 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 25 F -0.23 -4.24 17.08 44.97 0.77 -3.47 16 26 C -0.13 -1.91 4.76 30.60 0.15 -1.77 16 27 C 0.11 2.04 5.30 86.16 0.46 2.50 16 28 C -0.12 -3.06 4.51 29.47 0.13 -2.93 16 29 C -0.09 -2.97 3.12 -10.10 -0.03 -3.00 16 30 H 0.08 2.48 7.80 -2.39 -0.02 2.46 16 31 C 0.19 8.75 4.97 86.61 0.43 9.19 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.01 0.40 7.96 -2.39 -0.02 0.39 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.81 5.58 -2.39 -0.01 1.79 16 37 H 0.09 1.81 7.85 -2.38 -0.02 1.79 16 38 H 0.08 1.98 7.30 -2.39 -0.02 1.97 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.15 7.87 -2.39 -0.02 1.13 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.09 1.18 7.41 -2.39 -0.02 1.16 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.10 1.40 5.05 -2.38 -0.01 1.38 16 48 H 0.08 1.34 7.72 -2.39 -0.02 1.32 16 49 H 0.07 1.99 7.66 -2.39 -0.02 1.97 16 50 H 0.06 1.75 5.78 -2.39 -0.01 1.73 16 51 H 0.00 0.17 7.07 -2.39 -0.02 0.15 16 52 H 0.01 0.68 7.32 -2.39 -0.02 0.66 16 Total: -1.00 -70.54 384.47 4.21 -66.33 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.90 Total: 11.86 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 4.88 Total: 0.31 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.32 Total: -104.93 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.05 Total: -17.57 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.77 Total: -3.47 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.54 4.21 -66.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946590770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.397 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds