Wall clock time and date at job start Tue Mar 31 2020 21:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47260 * 239.99909 * 3 2 1 5 5 H 1.48502 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47220 * 119.99774 * 3 2 1 7 7 C 1.38813 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08013 * 119.99882 * 166.58797 * 7 2 1 9 9 N 1.36933 * 120.00225 * 346.58277 * 7 2 1 10 10 C 1.47176 * 126.09980 * 170.17628 * 9 7 2 11 11 C 1.53590 * 105.64571 * 149.77904 * 10 9 7 12 12 H 1.09006 * 108.73969 * 271.03024 * 11 10 9 13 13 C 1.50961 * 111.29158 * 150.29777 * 11 10 9 14 14 C 1.53167 * 111.96468 * 178.51722 * 13 11 10 15 15 N 1.49725 * 105.59278 * 99.83836 * 14 13 11 16 16 C 1.34774 * 122.75355 * 111.64728 * 15 14 13 17 17 O 1.21286 * 120.00201 * 355.20961 * 16 15 14 18 18 C 1.50702 * 120.00155 * 175.20994 * 16 15 14 19 19 H 1.09000 * 109.46732 * 37.79164 * 18 16 15 20 20 C 1.53000 * 109.46721 * 277.79681 * 18 16 15 21 21 C 1.53001 * 109.46935 * 180.02562 * 20 18 16 22 22 C 1.52997 * 109.47363 * 59.99438 * 21 20 18 23 23 C 1.52996 * 109.47251 * 300.00009 * 22 21 20 24 24 H 1.09002 * 109.47248 * 179.97438 * 23 22 21 25 25 F 1.39903 * 109.47401 * 300.00247 * 23 22 21 26 26 C 1.52997 * 109.47354 * 157.79257 * 18 16 15 27 27 C 1.43645 * 114.48823 * 291.60842 * 15 14 13 28 28 C 1.51105 * 114.75908 * 57.96550 * 27 15 14 29 29 C 1.51864 * 112.30834 * 274.93214 * 28 27 15 30 30 H 1.09001 * 110.94772 * 322.62118 * 29 28 27 31 31 C 1.46771 * 126.09959 * 350.22626 * 9 7 2 32 32 H 0.97001 * 119.99933 * 0.02562 * 1 2 3 33 33 H 1.09000 * 110.21466 * 268.81941 * 10 9 7 34 34 H 1.08999 * 110.20894 * 30.73344 * 10 9 7 35 35 H 1.09004 * 108.97974 * 57.88282 * 13 11 10 36 36 H 1.08994 * 108.98321 * 299.15834 * 13 11 10 37 37 H 1.08997 * 110.21886 * 218.86206 * 14 13 11 38 38 H 1.09001 * 110.21428 * 340.69105 * 14 13 11 39 39 H 1.09000 * 109.47095 * 299.99260 * 20 18 16 40 40 H 1.08993 * 109.47498 * 59.99488 * 20 18 16 41 41 H 1.08999 * 109.47605 * 179.97438 * 21 20 18 42 42 H 1.09007 * 109.46846 * 299.99709 * 21 20 18 43 43 H 1.09000 * 109.47277 * 60.00509 * 22 21 20 44 44 H 1.09007 * 109.47121 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47206 * 299.99905 * 26 18 16 46 46 H 1.09007 * 109.46918 * 60.00047 * 26 18 16 47 47 H 1.08995 * 108.42324 * 179.32866 * 27 15 14 48 48 H 1.08996 * 108.42722 * 296.76656 * 27 15 14 49 49 H 1.08998 * 108.92178 * 35.65959 * 28 27 15 50 50 H 1.08997 * 108.91428 * 154.29911 * 28 27 15 51 51 H 1.09003 * 109.77967 * 80.62690 * 31 9 7 52 52 H 1.09001 * 109.77654 * 319.85803 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0683 -1.2148 -0.2175 9 7 1.3536 -2.3720 0.2741 10 6 1.8980 -3.7300 0.1144 11 6 1.2040 -4.5832 1.1866 12 1 1.7913 -4.5386 2.1039 13 6 1.0704 -6.0197 0.7423 14 6 0.4127 -6.8925 1.8155 15 7 -1.0195 -7.0294 1.4008 16 6 -1.5490 -8.1959 0.9821 17 8 -0.8394 -9.1701 0.8466 18 6 -3.0229 -8.2898 0.6823 19 1 -3.3572 -7.3658 0.2103 20 6 -3.7956 -8.5054 1.9852 21 6 -5.2919 -8.6013 1.6807 22 6 -5.5459 -9.7780 0.7364 23 6 -4.7733 -9.5623 -0.5664 24 1 -4.9538 -10.4008 -1.2391 25 9 -5.2027 -8.3767 -1.1726 26 6 -3.2774 -9.4661 -0.2623 27 6 -1.7828 -5.8156 1.4867 28 6 -1.2382 -4.6664 0.6707 29 6 -0.1661 -3.8888 1.4139 30 1 -0.4052 -3.8119 2.4745 31 6 -0.0189 -2.4953 0.7792 32 1 -0.4850 0.8401 -0.0004 33 1 1.6676 -4.1137 -0.8794 34 1 2.9759 -3.7251 0.2765 35 1 2.0615 -6.4161 0.5213 36 1 0.4656 -6.0558 -0.1637 37 1 0.8903 -7.8717 1.8495 38 1 0.4802 -6.4072 2.7891 39 1 -3.4613 -9.4293 2.4572 40 1 -3.6143 -7.6674 2.6581 41 1 -5.8425 -8.7554 2.6088 42 1 -5.6266 -7.6776 1.2085 43 1 -5.2113 -10.7017 1.2086 44 1 -6.6119 -9.8460 0.5191 45 1 -2.7269 -9.3124 -1.1905 46 1 -2.9430 -10.3900 0.2098 47 1 -2.7994 -6.0237 1.1531 48 1 -1.8210 -5.5058 2.5310 49 1 -0.8135 -5.0590 -0.2532 50 1 -2.0562 -3.9897 0.4235 51 1 -0.7258 -2.3881 -0.0435 52 1 -0.2063 -1.7268 1.5292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946590772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:39 Heat of formation + Delta-G solvation = -92.565174 kcal Electronic energy + Delta-G solvation = -31223.712900 eV Core-core repulsion = 27136.420982 eV Total energy + Delta-G solvation = -4087.291918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.59740 -41.70254 -40.18093 -38.07122 -37.27421 -34.92012 -33.54580 -32.72934 -31.93992 -31.34686 -29.09280 -28.85622 -26.27780 -24.90982 -24.20098 -23.64317 -23.22210 -22.12803 -20.89921 -20.09748 -19.70336 -18.88892 -18.41777 -17.54214 -16.83249 -16.64380 -16.46784 -16.35754 -16.17411 -16.05095 -15.66349 -15.34889 -15.08627 -14.71287 -14.59595 -14.37311 -14.15554 -13.86255 -13.79776 -13.55140 -13.31242 -13.23716 -13.12797 -12.96818 -12.89509 -12.70456 -12.50187 -12.47107 -12.29215 -12.15811 -11.99251 -11.84249 -11.75797 -11.73154 -11.45222 -11.30306 -11.17192 -11.03265 -10.98289 -10.66252 -10.56126 -9.65505 -8.88443 -7.89783 -5.22323 1.44842 1.47991 1.54589 1.56935 1.96402 2.49221 3.28191 3.36621 3.53749 3.62709 3.65753 3.73628 3.86024 3.88812 3.92635 3.98401 4.02845 4.09351 4.12808 4.22503 4.29567 4.31567 4.40644 4.49949 4.53480 4.63258 4.63956 4.66719 4.70991 4.77695 4.88651 4.93841 4.96315 5.00205 5.06007 5.07998 5.08835 5.11705 5.15576 5.21084 5.24582 5.28325 5.30350 5.43910 5.47248 5.52000 5.56258 5.75025 5.78305 6.20336 6.51954 7.08867 7.12529 7.77355 8.45471 9.22584 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.002609 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.139945 B =10729.045350 C =11453.680484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.622 5.622 10 C 0.133 3.867 11 C -0.081 4.081 12 H 0.074 0.926 13 C -0.116 4.116 14 C 0.118 3.882 15 N -0.606 5.606 16 C 0.526 3.474 17 O -0.579 6.579 18 C -0.106 4.106 19 H 0.098 0.902 20 C -0.104 4.104 21 C -0.117 4.117 22 C -0.144 4.144 23 C 0.088 3.912 24 H 0.103 0.897 25 F -0.229 7.229 26 C -0.126 4.126 27 C 0.111 3.889 28 C -0.120 4.120 29 C -0.090 4.090 30 H 0.088 0.912 31 C 0.186 3.814 32 H 0.248 0.752 33 H 0.006 0.994 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.056 0.944 50 H 0.070 0.930 51 H -0.001 1.001 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 -21.805 6.120 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.255 4.255 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.007 3.993 11 C -0.100 4.100 12 H 0.093 0.907 13 C -0.154 4.154 14 C -0.003 4.003 15 N -0.338 5.338 16 C 0.316 3.684 17 O -0.459 6.459 18 C -0.127 4.127 19 H 0.116 0.884 20 C -0.142 4.142 21 C -0.155 4.155 22 C -0.182 4.182 23 C 0.052 3.948 24 H 0.121 0.879 25 F -0.210 7.210 26 C -0.164 4.164 27 C -0.013 4.013 28 C -0.158 4.158 29 C -0.109 4.109 30 H 0.106 0.894 31 C 0.061 3.939 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.017 0.983 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.222 -22.082 5.995 25.485 hybrid contribution 0.686 1.680 -0.649 1.927 sum -10.536 -20.402 5.347 23.576 Atomic orbital electron populations 1.70170 1.06353 1.25616 1.57071 1.25633 0.96453 1.01055 1.02386 0.85209 0.77321 0.78910 0.78243 1.20295 1.21876 1.20376 1.19359 0.92422 0.84594 1.41430 0.90516 1.44686 1.13159 1.01009 1.75847 1.21471 0.96743 0.85112 0.95943 1.21654 0.96075 0.93695 0.98602 0.90735 1.21579 1.01510 0.93263 0.99054 1.22282 0.79860 1.00245 0.97901 1.48156 1.12445 1.08694 1.64465 1.20900 0.90696 0.81581 0.75209 1.90651 1.63471 1.37618 1.54199 1.21347 0.90469 1.01469 0.99415 0.88380 1.21499 0.95272 1.03244 0.94146 1.21505 0.94758 0.98806 1.00402 1.22173 1.01227 1.00492 0.94268 1.21774 0.93328 0.84060 0.95605 0.87875 1.92783 1.91340 1.51413 1.85439 1.21945 0.95679 0.99307 0.99451 1.20694 0.95502 0.83686 1.01404 1.21445 0.98455 0.96735 0.99201 1.22091 0.94833 0.94277 0.99717 0.89384 1.20887 0.85358 0.93061 0.94597 0.94263 0.97638 0.93869 0.90761 0.92186 0.89606 0.88610 0.91011 0.90411 0.89323 0.91801 0.88572 0.89655 0.92030 0.88869 0.88792 0.90008 0.92581 0.91135 0.98343 0.96544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 10.86 21.65 0.24 -56.88 16 2 C -0.06 -3.53 5.36 84.86 0.46 -3.08 16 3 Si 0.98 46.02 29.57 68.60 2.03 48.05 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.25 -14.23 10.24 84.03 0.86 -13.37 16 8 H 0.08 4.22 7.87 -2.90 -0.02 4.20 16 9 N -0.62 -32.43 3.37 -696.82 -2.35 -34.78 16 10 C 0.13 5.54 6.71 86.45 0.58 6.12 16 11 C -0.08 -2.59 2.61 -10.48 -0.03 -2.61 16 12 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 13 C -0.12 -3.08 4.57 29.99 0.14 -2.94 16 14 C 0.12 2.69 6.25 85.81 0.54 3.23 16 15 N -0.61 -13.77 2.67 -823.68 -2.20 -15.97 16 16 C 0.53 12.76 6.90 87.66 0.60 13.36 16 17 O -0.58 -17.80 15.77 -3.05 -0.05 -17.85 16 18 C -0.11 -1.95 1.58 -11.54 -0.02 -1.97 16 19 H 0.10 1.87 6.09 -2.39 -0.01 1.86 16 20 C -0.10 -1.41 5.12 30.59 0.16 -1.26 16 21 C -0.12 -1.29 5.80 30.59 0.18 -1.11 16 22 C -0.14 -1.43 5.72 30.59 0.17 -1.25 16 23 C 0.09 1.23 4.12 30.58 0.13 1.36 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 F -0.23 -4.58 16.04 44.97 0.72 -3.86 16 26 C -0.13 -2.20 4.49 30.58 0.14 -2.06 16 27 C 0.11 2.32 5.41 86.29 0.47 2.79 16 28 C -0.12 -3.42 4.52 29.60 0.13 -3.28 16 29 C -0.09 -3.03 3.13 -10.11 -0.03 -3.07 16 30 H 0.09 2.66 7.77 -2.39 -0.02 2.64 16 31 C 0.19 9.00 4.98 86.61 0.43 9.43 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.01 0.25 7.96 -2.39 -0.02 0.23 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.80 5.58 -2.39 -0.01 1.79 16 37 H 0.09 2.02 7.34 -2.39 -0.02 2.00 16 38 H 0.10 1.88 7.85 -2.39 -0.02 1.86 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.99 7.85 -2.39 -0.02 0.97 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.84 7.80 -2.38 -0.02 0.82 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.60 7.88 -2.38 -0.02 1.58 16 47 H 0.09 1.66 5.37 -2.39 -0.01 1.65 16 48 H 0.08 1.48 7.70 -2.39 -0.02 1.47 16 49 H 0.06 1.78 5.78 -2.39 -0.01 1.77 16 50 H 0.07 2.10 7.65 -2.39 -0.02 2.08 16 51 H 0.00 -0.08 7.11 -2.39 -0.02 -0.09 16 52 H 0.02 0.88 7.26 -2.39 -0.02 0.87 16 Total: -1.00 -71.54 383.58 4.19 -67.36 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.90 Total: 13.64 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.90 Total: 0.28 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -4.31 Total: -107.62 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.72 Total: -3.86 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -71.54 4.19 -67.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946590772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.210 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds