Wall clock time and date at job start Tue Mar 31 2020 21:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00401 * 2 1 4 4 H 1.48505 * 109.47316 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47035 * 299.99923 * 3 2 1 6 6 H 1.48504 * 109.47320 * 59.99780 * 3 2 1 7 7 C 1.38813 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99518 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00440 * 359.97438 * 7 2 1 10 10 C 1.46592 * 125.32044 * 180.02562 * 9 7 2 11 11 C 1.53389 * 108.11042 * 178.66982 * 10 9 7 12 12 H 1.09005 * 110.26048 * 225.74532 * 11 10 9 13 13 C 1.51153 * 110.94308 * 102.73852 * 11 10 9 14 14 C 1.51735 * 111.88699 * 156.72774 * 13 11 10 15 15 N 1.43514 * 114.25013 * 82.61884 * 14 13 11 16 16 C 1.34767 * 122.54899 * 122.98822 * 15 14 13 17 17 O 1.21280 * 120.00228 * 354.85683 * 16 15 14 18 18 C 1.50704 * 120.00061 * 174.85684 * 16 15 14 19 19 F 1.39893 * 109.47072 * 311.51539 * 18 16 15 20 20 C 1.53004 * 109.47047 * 191.51611 * 18 16 15 21 21 C 1.52994 * 109.46918 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.47313 * 60.00018 * 21 20 18 23 23 C 1.52995 * 109.47055 * 299.99689 * 22 21 20 24 24 C 1.52997 * 109.47016 * 71.51713 * 18 16 15 25 25 C 1.49676 * 114.85582 * 302.92620 * 15 14 13 26 26 C 1.52906 * 105.27127 * 70.28685 * 25 15 14 27 27 C 1.51841 * 111.76962 * 258.79083 * 26 25 15 28 28 H 1.09004 * 110.52996 * 298.08040 * 27 26 25 29 29 C 1.46662 * 125.31623 * 0.02711 * 9 7 2 30 30 H 0.97005 * 119.99706 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.74683 * 58.99557 * 10 9 7 32 32 H 1.09002 * 109.73887 * 298.33424 * 10 9 7 33 33 H 1.08998 * 108.99931 * 277.34085 * 13 11 10 34 34 H 1.08997 * 109.00264 * 36.10489 * 13 11 10 35 35 H 1.08995 * 108.52715 * 203.85168 * 14 13 11 36 36 H 1.09002 * 108.52390 * 321.38816 * 14 13 11 37 37 H 1.09006 * 109.46851 * 299.99807 * 20 18 16 38 38 H 1.08994 * 109.47164 * 59.99940 * 20 18 16 39 39 H 1.08999 * 109.47759 * 299.99941 * 21 20 18 40 40 H 1.09000 * 109.47078 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47232 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47119 * 60.00159 * 22 21 20 43 43 H 1.08995 * 109.47485 * 300.00047 * 23 22 21 44 44 H 1.09003 * 109.47189 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46935 * 299.99924 * 24 18 16 46 46 H 1.09005 * 109.47329 * 60.00283 * 24 18 16 47 47 H 1.09007 * 110.33211 * 311.33115 * 25 15 14 48 48 H 1.08996 * 110.25535 * 189.20535 * 25 15 14 49 49 H 1.08993 * 109.00984 * 138.21724 * 26 25 15 50 50 H 1.09002 * 109.00689 * 19.34994 * 26 25 15 51 51 H 1.09006 * 109.96983 * 78.91041 * 29 9 7 52 52 H 1.09001 * 109.96926 * 317.65020 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 1.9375 -3.7201 -0.0005 11 6 0.8122 -4.7619 0.0333 12 1 1.0354 -5.5349 0.7687 13 6 0.5982 -5.3706 -1.3336 14 6 -0.0567 -6.7367 -1.2481 15 7 -1.4849 -6.6983 -1.1122 16 6 -2.3127 -7.3129 -1.9801 17 8 -1.8632 -7.8491 -2.9707 18 6 -3.7969 -7.3339 -1.7197 19 9 -4.0331 -7.7314 -0.3994 20 6 -4.4688 -8.3202 -2.6772 21 6 -5.9756 -8.3410 -2.4132 22 6 -6.5518 -6.9412 -2.6358 23 6 -5.8800 -5.9549 -1.6783 24 6 -4.3735 -5.9342 -1.9418 25 6 -1.9839 -5.9247 0.0680 26 6 -1.6920 -4.4596 -0.2582 27 6 -0.4521 -3.9587 0.4613 28 1 -0.5906 -4.0085 1.5413 29 6 -0.1349 -2.5239 -0.0006 30 1 -0.4850 0.8401 -0.0004 31 1 2.5714 -3.8341 0.8788 32 1 2.5337 -3.8513 -0.9036 33 1 -0.0377 -4.7086 -1.9213 34 1 1.5620 -5.4698 -1.8328 35 1 0.1904 -7.2963 -2.1503 36 1 0.3587 -7.2669 -0.3911 37 1 -4.2847 -8.0104 -3.7060 38 1 -4.0580 -9.3172 -2.5189 39 1 -6.1601 -8.6504 -1.3845 40 1 -6.4544 -9.0433 -3.0956 41 1 -7.6254 -6.9561 -2.4482 42 1 -6.3675 -6.6317 -3.6646 43 1 -6.0644 -6.2644 -0.6496 44 1 -6.2902 -4.9576 -1.8372 45 1 -3.8948 -5.2316 -1.2597 46 1 -4.1895 -5.6245 -2.9706 47 1 -1.4505 -6.2242 0.9702 48 1 -3.0558 -6.0773 0.1933 49 1 -2.5460 -3.8522 0.0413 50 1 -1.5439 -4.3579 -1.3333 51 1 -0.5238 -2.3622 -1.0060 52 1 -0.5757 -1.8045 0.6896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946851404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:50 Heat of formation + Delta-G solvation = -82.667322 kcal Electronic energy + Delta-G solvation = -31966.864555 eV Core-core repulsion = 27880.001840 eV Total energy + Delta-G solvation = -4086.862715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.11466 -41.62344 -40.11313 -38.34531 -37.34939 -34.89981 -33.67517 -32.67195 -31.84826 -31.58474 -29.09125 -28.97854 -26.31626 -25.09261 -24.19691 -23.85904 -23.16152 -21.94925 -20.94697 -20.50390 -19.72952 -18.93866 -18.60334 -17.79078 -17.12987 -16.96893 -16.48601 -16.38860 -15.96360 -15.68796 -15.48982 -15.44273 -15.05370 -14.58351 -14.53961 -14.44425 -14.30709 -13.93575 -13.70703 -13.59677 -13.44869 -13.23314 -13.14722 -13.05610 -12.91377 -12.77397 -12.73607 -12.52713 -12.31213 -12.09971 -12.08400 -11.86696 -11.75682 -11.69091 -11.49598 -11.37211 -11.11912 -11.07807 -11.00787 -10.72521 -10.65539 -9.77591 -8.85476 -7.79527 -5.20399 1.25666 1.45337 1.45796 1.56171 1.77345 2.49085 2.97510 3.31603 3.32256 3.42981 3.56537 3.66537 3.72863 3.79591 3.94998 4.02504 4.09414 4.10866 4.17635 4.19216 4.25692 4.35092 4.45341 4.46143 4.55626 4.61737 4.65703 4.68189 4.71743 4.82196 4.88240 4.93874 4.96675 5.00785 5.04101 5.10891 5.12601 5.14591 5.16322 5.18769 5.26155 5.29725 5.30047 5.43551 5.49421 5.51722 5.61027 5.76062 5.86202 6.23457 6.30477 6.87142 7.13840 7.82814 8.43943 9.24193 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.002997 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.636674 B = 9341.216868 C =10207.929935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.134 3.866 11 C -0.079 4.079 12 H 0.100 0.900 13 C -0.114 4.114 14 C 0.113 3.887 15 N -0.596 5.596 16 C 0.500 3.500 17 O -0.564 6.564 18 C 0.120 3.880 19 F -0.190 7.190 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.145 4.145 25 C 0.105 3.895 26 C -0.119 4.119 27 C -0.095 4.095 28 H 0.080 0.920 29 C 0.179 3.821 30 H 0.246 0.754 31 H 0.025 0.975 32 H 0.018 0.982 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.110 0.890 49 H 0.075 0.925 50 H 0.058 0.942 51 H -0.021 1.021 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 -17.989 -1.066 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.351 5.351 10 C 0.009 3.991 11 C -0.098 4.098 12 H 0.118 0.882 13 C -0.152 4.152 14 C -0.011 4.011 15 N -0.327 5.327 16 C 0.288 3.712 17 O -0.443 6.443 18 C 0.099 3.901 19 F -0.171 7.171 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.183 4.183 25 C -0.015 4.015 26 C -0.158 4.158 27 C -0.115 4.115 28 H 0.098 0.902 29 C 0.054 3.946 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.119 0.881 48 H 0.128 0.872 49 H 0.094 0.906 50 H 0.077 0.923 51 H -0.003 1.003 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.821 -18.102 -1.570 22.238 hybrid contribution 0.944 1.444 -0.153 1.732 sum -11.877 -16.657 -1.723 20.531 Atomic orbital electron populations 1.70148 1.06066 1.24863 1.58517 1.25605 0.96674 1.00842 1.02724 0.85027 0.78093 0.79566 0.76749 1.19283 1.22071 1.21632 1.19472 0.90961 0.83970 1.42597 0.90432 1.44539 1.02868 1.01041 1.86664 1.21356 0.95144 0.84956 0.97624 1.21770 0.94257 0.96499 0.97288 0.88168 1.21324 1.00926 0.95869 0.97066 1.20613 0.79999 0.96924 1.03521 1.48104 1.06983 1.50981 1.26622 1.21225 0.89537 0.77967 0.82511 1.90684 1.77802 1.47148 1.28684 1.21092 0.90409 0.98983 0.79661 1.92828 1.95205 1.92165 1.36860 1.21911 0.97076 0.98134 0.98893 1.21548 0.92516 0.98297 1.02950 1.21610 1.00646 0.94036 0.99662 1.21517 0.91984 1.01031 1.00821 1.22311 0.98916 0.92827 1.04276 1.22815 1.02144 0.88967 0.87621 1.21804 0.97620 0.95824 1.00519 1.22277 0.94282 0.95097 0.99810 0.90198 1.21158 0.83588 0.93346 0.96484 0.94464 0.95738 0.96374 0.93202 0.90660 0.90853 0.89701 0.89843 0.91102 0.91188 0.89686 0.89896 0.91604 0.90810 0.89966 0.89754 0.89992 0.88137 0.87174 0.90625 0.92325 1.00283 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.16 21.65 0.22 -56.16 16 2 C -0.07 -3.75 5.48 84.86 0.47 -3.28 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.24 -13.64 10.25 84.03 0.86 -12.78 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -32.22 3.38 -698.57 -2.36 -34.58 16 10 C 0.13 5.45 6.82 86.49 0.59 6.04 16 11 C -0.08 -2.47 2.77 -10.31 -0.03 -2.50 16 12 H 0.10 2.53 7.70 -2.38 -0.02 2.51 16 13 C -0.11 -3.31 4.77 29.58 0.14 -3.17 16 14 C 0.11 2.83 5.74 86.52 0.50 3.33 16 15 N -0.60 -14.83 2.61 -823.42 -2.15 -16.98 16 16 C 0.50 13.41 6.78 87.66 0.59 14.01 16 17 O -0.56 -18.54 15.49 -3.03 -0.05 -18.59 16 18 C 0.12 2.51 0.72 -11.54 -0.01 2.50 16 19 F -0.19 -3.93 13.56 44.97 0.61 -3.32 16 20 C -0.12 -2.28 4.37 30.59 0.13 -2.15 16 21 C -0.12 -1.56 5.80 30.59 0.18 -1.38 16 22 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 23 C -0.12 -1.65 5.80 30.58 0.18 -1.48 16 24 C -0.15 -2.71 4.69 30.58 0.14 -2.56 16 25 C 0.11 2.28 5.09 85.73 0.44 2.71 16 26 C -0.12 -3.30 3.52 30.18 0.11 -3.19 16 27 C -0.10 -3.22 2.93 -9.86 -0.03 -3.25 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 C 0.18 8.64 5.13 86.70 0.44 9.08 16 30 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.02 0.75 7.40 -2.39 -0.02 0.73 16 33 H 0.05 1.72 5.87 -2.39 -0.01 1.71 16 34 H 0.07 2.15 7.53 -2.39 -0.02 2.13 16 35 H 0.07 2.01 7.00 -2.39 -0.02 1.99 16 36 H 0.08 1.78 7.69 -2.39 -0.02 1.76 16 37 H 0.08 1.66 7.97 -2.38 -0.02 1.64 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 0.96 7.80 -2.39 -0.02 0.94 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 1.03 7.80 -2.39 -0.02 1.02 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.64 5.05 -2.39 -0.01 1.63 16 46 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.10 1.91 7.81 -2.38 -0.02 1.89 16 48 H 0.11 2.10 4.29 -2.39 -0.01 2.09 16 49 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 50 H 0.06 1.86 5.47 -2.39 -0.01 1.85 16 51 H -0.02 -1.12 7.72 -2.38 -0.02 -1.14 16 52 H 0.05 2.90 6.19 -2.39 -0.01 2.89 16 Total: -1.00 -69.02 375.31 4.09 -64.93 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.91 Total: 16.09 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.88 Total: 0.61 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -4.29 Total: -107.72 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.61 Total: -3.32 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -69.02 4.09 -64.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946851404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.740 kcal (2) G-P(sol) polarization free energy of solvation -69.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds