Wall clock time and date at job start Tue Mar 31 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48501 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46949 * 300.00015 * 3 2 1 6 6 H 1.48501 * 109.47404 * 60.00032 * 3 2 1 7 7 C 1.38814 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 197.37715 * 7 2 1 9 9 N 1.36935 * 119.99798 * 17.37335 * 7 2 1 10 10 C 1.46924 * 120.63846 * 207.67645 * 9 7 2 11 11 C 1.53187 * 108.77511 * 233.60918 * 10 9 7 12 12 C 1.53033 * 109.32897 * 305.36232 * 11 10 9 13 13 C 1.53030 * 109.54664 * 61.32565 * 12 11 10 14 14 C 1.46922 * 120.63723 * 27.65913 * 9 7 2 15 15 C 1.53033 * 109.44086 * 301.31907 * 12 11 10 16 16 C 1.53184 * 109.33622 * 178.75690 * 15 12 11 17 17 N 1.46932 * 108.77850 * 54.62893 * 16 15 12 18 18 C 1.34778 * 120.64146 * 126.38879 * 17 16 15 19 19 O 1.21276 * 119.99960 * 179.97438 * 18 17 16 20 20 C 1.50701 * 120.00014 * 359.97174 * 18 17 16 21 21 H 1.09000 * 110.43430 * 300.70602 * 20 18 17 22 22 C 1.54892 * 110.48371 * 63.24311 * 20 18 17 23 23 C 1.55035 * 102.68112 * 156.51721 * 22 20 18 24 24 C 1.54268 * 104.27935 * 322.23624 * 23 22 20 25 25 H 1.08996 * 110.03286 * 142.80533 * 24 23 22 26 26 F 1.39907 * 110.02940 * 264.23193 * 24 23 22 27 27 C 1.53878 * 106.59915 * 23.51666 * 24 23 22 28 28 C 1.46923 * 118.71779 * 306.36028 * 17 16 15 29 29 C 1.53044 * 109.39940 * 181.28975 * 12 11 10 30 30 H 0.97000 * 119.99933 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58838 * 113.82039 * 10 9 7 32 32 H 1.09009 * 109.58697 * 353.40254 * 10 9 7 33 33 H 1.08997 * 109.48917 * 65.32268 * 11 10 9 34 34 H 1.09001 * 109.49045 * 185.37435 * 11 10 9 35 35 H 1.09003 * 109.49161 * 58.64736 * 13 12 11 36 36 H 1.09002 * 109.49562 * 178.73059 * 13 12 11 37 37 H 1.08999 * 109.58522 * 6.60715 * 14 9 7 38 38 H 1.09006 * 109.58139 * 246.19041 * 14 9 7 39 39 H 1.09006 * 109.49025 * 298.71871 * 15 12 11 40 40 H 1.09000 * 109.48839 * 58.79397 * 15 12 11 41 41 H 1.08999 * 109.58724 * 294.83992 * 16 15 12 42 42 H 1.09003 * 109.58475 * 174.41416 * 16 15 12 43 43 H 1.08999 * 110.75648 * 274.93308 * 22 20 18 44 44 H 1.08993 * 110.75827 * 38.31062 * 22 20 18 45 45 H 1.08994 * 110.52445 * 203.48981 * 23 22 20 46 46 H 1.09004 * 110.47811 * 80.95367 * 23 22 20 47 47 H 1.09005 * 110.02717 * 240.71696 * 27 24 23 48 48 H 1.08999 * 110.02940 * 119.28705 * 27 24 23 49 49 H 1.08999 * 109.58890 * 293.85577 * 28 17 16 50 50 H 1.08997 * 109.59074 * 173.43113 * 28 17 16 51 51 H 1.09004 * 109.49679 * 301.22896 * 29 12 11 52 52 H 1.09002 * 109.49486 * 61.28907 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2788 9 7 1.3725 -2.3608 -0.3552 10 6 1.8193 -3.6549 0.1781 11 6 2.0748 -4.6090 -0.9928 12 6 0.8195 -4.6884 -1.8646 13 6 0.5008 -3.3028 -2.4306 14 6 0.2280 -2.3338 -1.2760 15 6 -0.3584 -5.1765 -1.0182 16 6 -1.6201 -5.2255 -1.8855 17 7 -1.3473 -6.0488 -3.0714 18 6 -2.1491 -7.0851 -3.3875 19 8 -1.9133 -7.7567 -4.3694 20 6 -3.3385 -7.4092 -2.5207 21 1 -3.0187 -7.6274 -1.5018 22 6 -4.3523 -6.2381 -2.5316 23 6 -5.6835 -6.9369 -2.1531 24 6 -5.6159 -8.2997 -2.8728 25 1 -6.0593 -9.0746 -2.2475 26 9 -6.2883 -8.2287 -4.0977 27 6 -4.1249 -8.6000 -3.1065 28 6 -0.1840 -5.7203 -3.9065 29 6 1.0619 -5.6660 -3.0169 30 1 -0.4850 0.8401 0.0004 31 1 1.0468 -4.0697 0.8257 32 1 2.7399 -3.5180 0.7456 33 1 2.9088 -4.2383 -1.5886 34 1 2.3146 -5.6004 -0.6084 35 1 1.3490 -2.9442 -3.0138 36 1 -0.3802 -3.3647 -3.0694 37 1 0.0984 -1.3252 -1.6683 38 1 -0.6741 -2.6409 -0.7466 39 1 -0.1419 -6.1735 -0.6343 40 1 -0.5159 -4.4917 -0.1850 41 1 -1.8897 -4.2159 -2.1957 42 1 -2.4384 -5.6656 -1.3155 43 1 -4.0830 -5.4871 -1.7890 44 1 -4.4191 -5.7943 -3.5248 45 1 -6.5345 -6.3579 -2.5118 46 1 -5.7467 -7.0781 -1.0741 47 1 -3.9252 -8.6903 -4.1743 48 1 -3.8448 -9.5206 -2.5946 49 1 -0.3367 -4.7509 -4.3809 50 1 -0.0543 -6.4869 -4.6705 51 1 1.9151 -5.3295 -3.6060 52 1 1.2660 -6.6585 -2.6151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957593187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:45 Heat of formation + Delta-G solvation = -93.566688 kcal Electronic energy + Delta-G solvation = -31559.207744 eV Core-core repulsion = 27471.872397 eV Total energy + Delta-G solvation = -4087.335347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.57082 -41.84981 -40.27843 -37.79915 -37.29827 -35.14863 -33.14142 -32.15400 -31.54142 -30.20329 -29.67744 -29.07138 -26.67303 -24.97606 -24.35017 -23.65022 -22.89843 -21.73404 -21.41480 -20.20358 -19.24848 -18.72403 -17.98398 -17.40296 -17.11653 -16.85723 -16.60750 -16.01611 -15.86193 -15.69399 -15.49222 -15.25718 -15.10657 -14.95324 -14.75137 -14.55172 -14.45967 -14.23368 -13.83374 -13.35391 -13.19742 -12.94728 -12.91925 -12.87251 -12.77178 -12.54615 -12.48118 -12.28814 -12.16426 -12.10677 -11.96990 -11.95128 -11.73573 -11.66248 -11.54997 -11.47471 -11.12732 -11.03392 -10.90257 -10.70653 -10.45558 -9.57848 -8.58734 -7.83837 -5.26461 1.45229 1.48595 1.57467 1.59143 1.99153 2.52957 3.24548 3.30193 3.34747 3.61579 3.74324 3.80328 3.82724 3.85237 3.93870 4.03017 4.17444 4.20929 4.26565 4.37579 4.39698 4.41399 4.44154 4.49986 4.60721 4.63138 4.67146 4.68723 4.74959 4.81423 4.85549 4.88721 4.91790 5.03808 5.06324 5.08557 5.10556 5.15311 5.19664 5.23030 5.36084 5.37604 5.41190 5.46464 5.47984 5.60323 5.63602 5.71308 5.90359 6.42830 6.44031 7.14483 7.20771 7.93990 8.43507 9.21351 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.002831 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.684889 B = 9887.671111 C =10702.135000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.047 4.047 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.259 4.259 8 H 0.060 0.940 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.112 4.112 12 C -0.043 4.043 13 C -0.119 4.119 14 C 0.182 3.818 15 C -0.120 4.120 16 C 0.105 3.895 17 N -0.600 5.600 18 C 0.517 3.483 19 O -0.588 6.588 20 C -0.108 4.108 21 H 0.133 0.867 22 C -0.119 4.119 23 C -0.142 4.142 24 C 0.079 3.921 25 H 0.117 0.883 26 F -0.234 7.234 27 C -0.138 4.138 28 C 0.111 3.889 29 C -0.110 4.110 30 H 0.248 0.752 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -17.000 -2.298 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.243 4.243 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.389 4.389 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.017 3.983 11 C -0.151 4.151 12 C -0.043 4.043 13 C -0.158 4.158 14 C 0.057 3.943 15 C -0.157 4.157 16 C -0.017 4.017 17 N -0.332 5.332 18 C 0.307 3.693 19 O -0.469 6.469 20 C -0.129 4.129 21 H 0.151 0.849 22 C -0.157 4.157 23 C -0.180 4.180 24 C 0.043 3.957 25 H 0.135 0.865 26 F -0.215 7.215 27 C -0.176 4.176 28 C -0.012 4.012 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.134 0.866 47 H 0.084 0.916 48 H 0.118 0.882 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.562 -17.209 -2.825 19.428 hybrid contribution 0.626 1.453 -0.264 1.604 sum -7.936 -15.756 -3.090 17.910 Atomic orbital electron populations 1.70157 1.06295 1.25497 1.55565 1.25642 0.96011 1.00970 1.01678 0.85354 0.78640 0.80618 0.76715 1.19537 1.21909 1.21948 1.19480 0.92781 0.86403 1.40245 0.92239 1.44284 1.36085 1.01933 1.50982 1.21059 0.97026 0.85968 0.94258 1.21918 0.96793 0.99084 0.97261 1.20327 0.95242 0.93872 0.94842 1.22119 1.00091 0.95470 0.98095 1.20562 0.88031 0.96979 0.88772 1.21955 0.94076 1.01654 0.98065 1.22076 0.98648 0.95391 0.85552 1.48143 1.27250 1.30277 1.27486 1.21023 0.84099 0.78940 0.85284 1.90644 1.74073 1.51766 1.30411 1.22193 0.92570 0.97423 1.00721 0.84888 1.22727 0.93853 0.96592 1.02528 1.23034 0.97838 0.94269 1.02858 1.22515 0.91374 1.00692 0.81132 0.86533 1.92793 1.82429 1.97779 1.48516 1.22702 0.93355 0.98606 1.02941 1.21587 0.85064 1.00974 0.93535 1.21877 0.97011 0.99389 0.96576 0.94255 0.95777 0.93830 0.93338 0.90567 0.94121 0.91819 0.93874 0.97087 0.90645 0.91113 0.91449 0.86846 0.88108 0.92674 0.89966 0.86623 0.91608 0.88232 0.91448 0.90315 0.90625 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.05 11.19 21.65 0.24 -52.81 16 2 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 3 Si 0.96 44.31 29.59 68.60 2.03 46.34 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.26 -13.89 9.59 84.03 0.81 -13.09 16 8 H 0.06 3.18 7.89 -2.91 -0.02 3.15 16 9 N -0.61 -28.92 2.99 -699.11 -2.09 -31.02 16 10 C 0.14 5.44 6.05 86.36 0.52 5.97 16 11 C -0.11 -3.38 4.90 30.67 0.15 -3.23 16 12 C -0.04 -1.18 0.51 -52.13 -0.03 -1.21 16 13 C -0.12 -4.06 4.14 30.67 0.13 -3.93 16 14 C 0.18 8.08 4.84 86.36 0.42 8.49 16 15 C -0.12 -2.94 4.14 30.67 0.13 -2.81 16 16 C 0.11 2.24 5.02 86.36 0.43 2.67 16 17 N -0.60 -14.09 2.97 -818.92 -2.43 -16.52 16 18 C 0.52 12.83 7.08 87.66 0.62 13.45 16 19 O -0.59 -19.22 14.85 -3.02 -0.04 -19.26 16 20 C -0.11 -1.82 2.30 -10.47 -0.02 -1.84 16 21 H 0.13 1.53 7.68 -2.39 -0.02 1.51 16 22 C -0.12 -1.81 5.50 31.94 0.18 -1.63 16 23 C -0.14 -1.66 6.62 31.72 0.21 -1.45 16 24 C 0.08 1.14 4.68 31.32 0.15 1.29 16 25 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 26 F -0.23 -5.19 17.05 44.97 0.77 -4.42 16 27 C -0.14 -2.39 6.02 31.32 0.19 -2.20 16 28 C 0.11 2.76 5.96 86.36 0.52 3.28 16 29 C -0.11 -2.65 4.90 30.67 0.15 -2.50 16 30 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.02 0.91 6.66 -2.39 -0.02 0.89 16 32 H 0.04 1.70 7.93 -2.38 -0.02 1.68 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.99 4.99 -2.39 -0.01 1.98 16 37 H 0.04 2.26 6.03 -2.39 -0.01 2.25 16 38 H 0.01 0.50 6.72 -2.38 -0.02 0.49 16 39 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.07 2.09 4.98 -2.39 -0.01 2.08 16 41 H 0.07 1.63 6.72 -2.39 -0.02 1.61 16 42 H 0.11 1.76 4.38 -2.39 -0.01 1.75 16 43 H 0.10 1.26 6.14 -2.39 -0.01 1.24 16 44 H 0.05 1.08 8.05 -2.39 -0.02 1.06 16 45 H 0.08 1.03 8.11 -2.39 -0.02 1.01 16 46 H 0.12 0.73 8.14 -2.38 -0.02 0.72 16 47 H 0.07 1.62 6.75 -2.38 -0.02 1.61 16 48 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.07 1.71 6.67 -2.39 -0.02 1.70 16 50 H 0.08 2.11 7.01 -2.39 -0.02 2.10 16 51 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 52 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.96 375.44 4.34 -63.62 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.92 Total: 15.00 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.96 Total: -0.93 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.29 Total: -100.35 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.04 Total: -19.26 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.77 Total: -4.42 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.96 4.34 -63.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957593187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.947 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds