Wall clock time and date at job start Tue Mar 31 2020 21:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99762 * 2 1 4 4 H 1.48500 * 109.47117 * 240.00112 * 3 2 1 5 5 H 1.48503 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47031 * 120.00261 * 3 2 1 7 7 C 1.38815 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99894 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.65030 * 0.02562 * 9 7 2 11 11 C 1.54323 * 107.26858 * 178.92255 * 10 9 7 12 12 C 1.55158 * 102.94538 * 337.80788 * 11 10 9 13 13 H 1.09004 * 111.00429 * 277.39380 * 12 11 10 14 14 C 1.52998 * 111.00296 * 153.57638 * 12 11 10 15 15 H 1.08997 * 109.49569 * 299.99852 * 14 12 11 16 16 C 1.53043 * 109.49513 * 179.97438 * 14 12 11 17 17 C 1.53036 * 109.53574 * 178.65173 * 16 14 12 18 18 C 1.53191 * 109.31394 * 61.36547 * 17 16 14 19 19 N 1.46921 * 108.77677 * 305.35997 * 18 17 16 20 20 C 1.34774 * 120.63728 * 233.62923 * 19 18 17 21 21 O 1.21286 * 119.99542 * 355.45338 * 20 19 18 22 22 C 1.50695 * 120.00455 * 175.45061 * 20 19 18 23 23 C 1.53004 * 112.84902 * 67.84805 * 22 20 19 24 24 F 1.39896 * 109.47345 * 185.08689 * 23 22 20 25 25 C 1.53785 * 113.61593 * 296.65581 * 22 20 19 26 26 C 1.53947 * 87.01944 * 220.04396 * 25 22 20 27 27 C 1.53778 * 113.61781 * 199.04667 * 22 20 19 28 28 C 1.47005 * 118.74990 * 53.61000 * 19 18 17 29 29 C 1.47429 * 125.64589 * 180.02562 * 9 7 2 30 30 H 0.96995 * 120.00830 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.87949 * 59.50722 * 10 9 7 32 32 H 1.08993 * 110.01175 * 298.41543 * 10 9 7 33 33 H 1.09003 * 110.71977 * 219.44563 * 11 10 9 34 34 H 1.09000 * 110.87143 * 96.24561 * 11 10 9 35 35 H 1.09006 * 109.45885 * 298.67219 * 16 14 12 36 36 H 1.09004 * 109.46043 * 58.64566 * 16 14 12 37 37 H 1.09008 * 109.49531 * 181.31583 * 17 16 14 38 38 H 1.09000 * 109.49953 * 301.37728 * 17 16 14 39 39 H 1.09004 * 109.58896 * 65.15535 * 18 17 16 40 40 H 1.09005 * 109.58768 * 185.57148 * 18 17 16 41 41 H 1.09000 * 109.47198 * 305.09236 * 23 22 20 42 42 H 1.09006 * 109.47038 * 65.08630 * 23 22 20 43 43 H 1.09005 * 113.60968 * 334.56752 * 25 22 20 44 44 H 1.09000 * 113.61646 * 105.46318 * 25 22 20 45 45 H 1.08998 * 113.53937 * 270.80953 * 26 25 22 46 46 H 1.08998 * 113.74348 * 139.93761 * 26 25 22 47 47 H 1.08995 * 113.61559 * 254.53229 * 27 22 20 48 48 H 1.09002 * 113.61157 * 25.43167 * 27 22 20 49 49 H 1.09003 * 109.62700 * 186.62046 * 28 19 18 50 50 H 1.08997 * 109.58265 * 66.17413 * 28 19 18 51 51 H 1.08996 * 110.36962 * 85.30563 * 29 9 7 52 52 H 1.09008 * 110.36054 * 322.98118 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1374 -2.5328 -0.0028 11 6 -0.4482 -4.0441 -0.0314 12 6 0.8526 -4.6555 -0.6158 13 1 0.8581 -4.5951 -1.7042 14 6 1.0374 -6.1007 -0.1487 15 1 1.0975 -6.1264 0.9393 16 6 2.3274 -6.6690 -0.7444 17 6 2.5305 -8.1033 -0.2509 18 6 1.3583 -8.9711 -0.7194 19 7 0.1032 -8.3515 -0.2730 20 6 -0.7971 -9.0589 0.4381 21 8 -0.6136 -10.2399 0.6447 22 6 -2.0315 -8.3826 0.9764 23 6 -2.9993 -7.9478 -0.1259 24 9 -4.0580 -7.2293 0.4397 25 6 -1.7305 -7.2778 2.0029 26 6 -2.9454 -7.7942 2.7950 27 6 -2.7081 -9.1558 2.1206 28 6 -0.1523 -6.9451 -0.6160 29 6 1.9336 -3.7311 -0.0017 30 1 -0.4851 0.8399 -0.0004 31 1 -0.5568 -2.0513 -0.8861 32 1 -0.5573 -2.0850 0.8978 33 1 -1.2977 -4.2509 -0.6823 34 1 -0.6338 -4.4216 0.9742 35 1 2.2574 -6.6657 -1.8322 36 1 3.1726 -6.0550 -0.4331 37 1 3.4614 -8.4994 -0.6569 38 1 2.5765 -8.1103 0.8381 39 1 1.3657 -9.0389 -1.8073 40 1 1.4469 -9.9685 -0.2887 41 1 -2.4738 -7.3168 -0.8427 42 1 -3.3895 -8.8291 -0.6353 43 1 -0.7816 -7.4113 2.5225 44 1 -1.8609 -6.2695 1.6100 45 1 -3.8850 -7.3224 2.5076 46 1 -2.7918 -7.8089 3.8740 47 1 -3.6266 -9.6614 1.8226 48 1 -2.0271 -9.8036 2.6724 49 1 -1.0599 -6.6055 -0.1170 50 1 -0.2680 -6.8476 -1.6955 51 1 2.1655 -4.0427 1.0167 52 1 2.8339 -3.7399 -0.6163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961233754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:28 Heat of formation + Delta-G solvation = -62.438779 kcal Electronic energy + Delta-G solvation = -31850.876400 eV Core-core repulsion = 27764.890861 eV Total energy + Delta-G solvation = -4085.985539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.77778 -41.90990 -39.94988 -38.75793 -37.83266 -35.02223 -33.83388 -32.70191 -30.73894 -30.10595 -28.77504 -26.94457 -26.74562 -26.28313 -24.83376 -23.85463 -22.36799 -21.64808 -20.81826 -20.74143 -19.69030 -18.80304 -18.42590 -17.57623 -17.04369 -16.77749 -16.70047 -16.42967 -16.21759 -15.80015 -15.58583 -15.42321 -15.17840 -14.73603 -14.44912 -14.24338 -13.98258 -13.94595 -13.78642 -13.61719 -13.47553 -13.34168 -13.22880 -13.06730 -12.81011 -12.71497 -12.34327 -12.23930 -12.11603 -12.03673 -11.97050 -11.94677 -11.72237 -11.68778 -11.42586 -11.28382 -11.24116 -11.13735 -10.99804 -10.67003 -10.63454 -9.65608 -8.84811 -7.82111 -5.16819 1.44343 1.46406 1.49178 1.55507 1.90825 2.51595 3.14836 3.25965 3.35939 3.40603 3.53781 3.62890 3.73969 3.82300 3.85387 3.97763 4.01166 4.08593 4.18435 4.21176 4.26545 4.35310 4.42934 4.46349 4.53342 4.58222 4.63056 4.72181 4.74364 4.79493 4.81299 4.85406 4.92541 4.94644 4.97964 5.00828 5.06050 5.10454 5.16313 5.17226 5.20577 5.34080 5.43295 5.43339 5.48568 5.55085 5.59455 5.74792 5.84291 6.24348 6.31340 7.05221 7.14523 7.83254 8.47160 9.27794 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.003279 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.246210 B = 8537.317534 C = 9861.805257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.125 4.125 12 C -0.075 4.075 13 H 0.080 0.920 14 C -0.076 4.076 15 H 0.067 0.933 16 C -0.114 4.114 17 C -0.125 4.125 18 C 0.108 3.892 19 N -0.601 5.601 20 C 0.535 3.465 21 O -0.574 6.574 22 C -0.141 4.141 23 C 0.084 3.916 24 F -0.210 7.210 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.107 4.107 28 C 0.104 3.896 29 C 0.140 3.860 30 H 0.245 0.755 31 H 0.008 0.992 32 H -0.001 1.001 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.017 0.983 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -20.523 -1.434 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.095 4.095 13 H 0.099 0.901 14 C -0.096 4.096 15 H 0.085 0.915 16 C -0.151 4.151 17 C -0.163 4.163 18 C -0.014 4.014 19 N -0.332 5.332 20 C 0.324 3.676 21 O -0.454 6.454 22 C -0.145 4.145 23 C 0.029 3.971 24 F -0.191 7.191 25 C -0.159 4.159 26 C -0.177 4.177 27 C -0.145 4.145 28 C -0.018 4.018 29 C 0.015 3.985 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.018 0.982 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.115 0.885 50 H 0.108 0.892 51 H 0.035 0.965 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.815 -20.919 -1.329 21.149 hybrid contribution 0.445 1.454 0.261 1.543 sum -2.369 -19.465 -1.068 19.638 Atomic orbital electron populations 1.70181 1.06216 1.25181 1.58347 1.25607 0.96568 1.00875 1.02777 0.85211 0.77194 0.79093 0.78197 1.20234 1.22100 1.20493 1.19423 0.90953 0.84002 1.42910 0.90222 1.44812 1.02633 1.01219 1.86928 1.20892 0.83617 0.92378 0.97275 1.22808 0.97762 0.94752 1.00989 1.22178 0.94670 0.92774 0.99896 0.90124 1.21320 0.95562 0.92265 1.00430 0.91477 1.21582 0.96819 0.95539 1.01201 1.21852 0.98329 0.95103 1.00993 1.21733 0.82279 0.97058 1.00295 1.48195 1.19358 1.12579 1.53072 1.20325 0.84465 0.86007 0.76825 1.90663 1.78143 1.16839 1.59757 1.22787 0.94541 1.00251 0.96919 1.21876 0.84802 0.97201 0.93227 1.92745 1.59052 1.80355 1.86922 1.23004 0.99663 0.97391 0.95827 1.23031 0.98888 0.95715 1.00076 1.22763 1.00343 0.96802 0.94547 1.22191 0.99009 0.78714 1.01896 1.21715 0.95476 0.84429 0.96906 0.94527 0.97338 0.98234 0.89854 0.91289 0.90552 0.91768 0.88866 0.92686 0.89670 0.90332 0.88253 0.88611 0.89962 0.89811 0.88413 0.90483 0.90186 0.90077 0.88522 0.89170 0.96544 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 10.31 21.65 0.22 -56.92 16 2 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 3 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.24 -13.62 10.28 84.03 0.86 -12.76 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -31.71 3.39 -691.97 -2.35 -34.06 16 10 C 0.18 8.79 5.37 86.73 0.47 9.26 16 11 C -0.13 -4.03 5.40 31.78 0.17 -3.85 16 12 C -0.08 -2.14 2.57 -9.40 -0.02 -2.16 16 13 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 14 C -0.08 -1.59 1.86 -10.72 -0.02 -1.61 16 15 H 0.07 1.57 8.07 -2.39 -0.02 1.55 16 16 C -0.11 -2.07 5.05 30.62 0.15 -1.91 16 17 C -0.12 -1.99 6.08 30.67 0.19 -1.80 16 18 C 0.11 1.84 6.42 86.36 0.55 2.40 16 19 N -0.60 -11.35 2.97 -818.72 -2.43 -13.79 16 20 C 0.54 11.96 6.68 87.66 0.59 12.55 16 21 O -0.57 -16.67 15.64 -3.05 -0.05 -16.72 16 22 C -0.14 -2.66 0.70 -52.40 -0.04 -2.69 16 23 C 0.08 1.34 6.60 71.98 0.48 1.82 16 24 F -0.21 -4.09 14.58 44.97 0.66 -3.43 16 25 C -0.12 -2.31 5.78 31.18 0.18 -2.13 16 26 C -0.14 -2.50 7.56 31.18 0.24 -2.26 16 27 C -0.11 -2.02 6.83 31.12 0.21 -1.80 16 28 C 0.10 1.81 3.93 86.35 0.34 2.15 16 29 C 0.14 5.30 5.94 86.86 0.52 5.82 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.01 0.45 7.38 -2.39 -0.02 0.44 16 32 H 0.00 -0.03 7.50 -2.39 -0.02 -0.05 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.06 7.69 -2.39 -0.02 2.05 16 35 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.30 7.46 -2.38 -0.02 1.28 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.56 7.03 -2.38 -0.02 1.54 16 41 H 0.10 1.35 5.68 -2.39 -0.01 1.34 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.08 1.66 8.09 -2.38 -0.02 1.64 16 44 H 0.08 1.63 6.86 -2.39 -0.02 1.62 16 45 H 0.10 1.78 6.38 -2.39 -0.02 1.77 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 48 H 0.08 1.71 7.76 -2.39 -0.02 1.69 16 49 H 0.10 1.67 2.66 -2.39 -0.01 1.66 16 50 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.02 0.64 7.98 -2.39 -0.02 0.62 16 52 H 0.04 1.47 8.05 -2.38 -0.02 1.45 16 Total: -1.00 -69.92 386.43 4.30 -65.62 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.90 Total: 13.87 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.33 Total: -2.26 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -4.56 Total: -104.77 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.72 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.66 Total: -3.43 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -69.92 4.30 -65.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961233754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds