Wall clock time and date at job start Tue Mar 31 2020 21:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00094 * 2 1 4 4 H 1.48497 * 109.46865 * 275.00273 * 3 2 1 5 5 H 1.48497 * 109.46730 * 34.99797 * 3 2 1 6 6 H 1.48493 * 109.47080 * 154.99687 * 3 2 1 7 7 C 1.38816 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99779 * 185.62262 * 7 2 1 9 9 N 1.36932 * 120.00031 * 5.35282 * 7 2 1 10 10 C 1.47021 * 125.64672 * 354.81575 * 9 7 2 11 11 C 1.54321 * 107.27136 * 181.02154 * 10 9 7 12 12 C 1.55161 * 102.94471 * 22.19279 * 11 10 9 13 13 H 1.08997 * 111.00445 * 82.56892 * 12 11 10 14 14 C 1.52995 * 111.00505 * 206.38632 * 12 11 10 15 15 H 1.09007 * 109.49589 * 60.06295 * 14 12 11 16 16 C 1.53031 * 109.49924 * 299.99459 * 14 12 11 17 17 C 1.53046 * 109.53916 * 178.68343 * 16 14 12 18 18 C 1.53193 * 109.31044 * 61.36642 * 17 16 14 19 19 N 1.46922 * 108.77758 * 305.36405 * 18 17 16 20 20 C 1.34771 * 120.63438 * 233.61061 * 19 18 17 21 21 O 1.21285 * 120.00466 * 184.48420 * 20 19 18 22 22 C 1.50701 * 119.99980 * 4.48181 * 20 19 18 23 23 C 1.52999 * 112.85138 * 292.08845 * 22 20 19 24 24 F 1.39901 * 109.47101 * 302.89845 * 23 22 20 25 25 C 1.53776 * 113.61636 * 160.88723 * 22 20 19 26 26 C 1.53956 * 87.02123 * 220.05344 * 25 22 20 27 27 C 1.53781 * 87.11271 * 25.36282 * 26 25 22 28 28 C 1.46935 * 118.73724 * 53.60941 * 19 18 17 29 29 C 1.47423 * 125.64928 * 174.50200 * 9 7 2 30 30 H 0.96996 * 120.00579 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.88087 * 300.43763 * 10 9 7 32 32 H 1.09005 * 109.88653 * 61.60252 * 10 9 7 33 33 H 1.09003 * 110.71987 * 140.55195 * 11 10 9 34 34 H 1.09000 * 110.72571 * 263.64903 * 11 10 9 35 35 H 1.08995 * 109.46176 * 298.70769 * 16 14 12 36 36 H 1.08999 * 109.45805 * 58.67928 * 16 14 12 37 37 H 1.08997 * 109.49722 * 181.31963 * 17 16 14 38 38 H 1.09003 * 109.49828 * 301.41429 * 17 16 14 39 39 H 1.08999 * 109.58589 * 65.15169 * 18 17 16 40 40 H 1.09000 * 109.58317 * 185.57594 * 18 17 16 41 41 H 1.09005 * 109.47169 * 62.90210 * 23 22 20 42 42 H 1.09002 * 109.46848 * 182.89645 * 23 22 20 43 43 H 1.09001 * 113.61431 * 334.57235 * 25 22 20 44 44 H 1.09000 * 113.61478 * 105.47242 * 25 22 20 45 45 H 1.08999 * 113.53400 * 270.81144 * 26 25 22 46 46 H 1.08998 * 113.66956 * 139.93403 * 26 25 22 47 47 H 1.08999 * 113.61513 * 220.09385 * 27 26 25 48 48 H 1.09004 * 113.68929 * 89.19805 * 27 26 25 49 49 H 1.09003 * 109.58345 * 186.60369 * 28 19 18 50 50 H 1.08994 * 109.58447 * 66.17988 * 28 19 18 51 51 H 1.08996 * 110.36764 * 274.74853 * 29 9 7 52 52 H 1.09004 * 110.36507 * 37.07531 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3919 2.1074 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0864 -1.2044 0.0911 9 7 1.3301 -2.3854 -0.1117 10 6 -0.1324 -2.5347 -0.1290 11 6 -0.4377 -4.0431 -0.2430 12 6 0.8636 -4.7020 0.2861 13 1 0.8659 -4.7431 1.3752 14 6 1.0547 -6.0969 -0.3128 15 1 1.1191 -6.0210 -1.3984 16 6 -0.1333 -6.9833 0.0677 17 6 0.0408 -8.3690 -0.5582 18 6 1.3193 -9.0139 -0.0136 19 7 2.4461 -8.1005 -0.2470 20 6 3.5518 -8.5243 -0.8905 21 8 4.5071 -7.7860 -1.0056 22 6 3.6013 -9.9158 -1.4670 23 6 3.6121 -11.0044 -0.3919 24 9 4.6989 -10.8021 0.4656 25 6 4.6867 -10.0996 -2.5406 26 6 3.6625 -10.9477 -3.3164 27 6 2.5674 -10.1588 -2.5793 28 6 2.3447 -6.7160 0.2345 29 6 1.9431 -3.7200 -0.2404 30 1 -0.4851 0.8400 0.0004 31 1 -0.5563 -2.1394 0.7941 32 1 -0.5489 -2.0063 -0.9866 33 1 -1.2884 -4.3128 0.3829 34 1 -0.6203 -4.3224 -1.2806 35 1 -0.1827 -7.0784 1.1524 36 1 -1.0551 -6.5324 -0.2996 37 1 -0.8170 -8.9924 -0.3061 38 1 0.1151 -8.2723 -1.6414 39 1 1.2106 -9.1942 1.0559 40 1 1.5007 -9.9571 -0.5288 41 1 2.6850 -10.9598 0.1797 42 1 3.7001 -11.9821 -0.8657 43 1 4.9607 -9.1743 -3.0475 44 1 5.5515 -10.6660 -2.1949 45 1 3.6880 -12.0060 -3.0569 46 1 3.6762 -10.7743 -4.3924 47 1 1.7237 -10.7730 -2.2645 48 1 2.2598 -9.2495 -3.0957 49 1 3.2028 -6.1431 -0.1170 50 1 2.3196 -6.7090 1.3241 51 1 2.1753 -3.9317 -1.2840 52 1 2.8438 -3.7842 0.3702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961233767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:37 Heat of formation + Delta-G solvation = -67.931096 kcal Electronic energy + Delta-G solvation = -31188.400374 eV Core-core repulsion = 27102.176670 eV Total energy + Delta-G solvation = -4086.223704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -48.68093 -41.89523 -40.10025 -38.78351 -37.95754 -35.23723 -33.62472 -32.51841 -31.01853 -29.92930 -28.59913 -27.09999 -26.75955 -26.32581 -24.97680 -23.90127 -22.31379 -21.71543 -20.95241 -20.70473 -19.54464 -18.87759 -18.30063 -17.47370 -17.03341 -16.87161 -16.65641 -16.51427 -16.24950 -15.84018 -15.50588 -15.43958 -15.26069 -14.96309 -14.68170 -14.21780 -14.07107 -13.92801 -13.80324 -13.61292 -13.50585 -13.34923 -13.12605 -12.94847 -12.81673 -12.78472 -12.31761 -12.23952 -12.17520 -12.07608 -11.95874 -11.83128 -11.79241 -11.70023 -11.46820 -11.39539 -11.37932 -11.20035 -11.05168 -10.73452 -10.54033 -9.63534 -8.92389 -7.89808 -5.24673 1.41135 1.43540 1.52698 1.53725 1.94065 2.45845 3.16836 3.21701 3.27553 3.53248 3.56449 3.61156 3.70742 3.82390 3.84751 3.88886 4.01199 4.13504 4.19246 4.23783 4.25158 4.30430 4.42108 4.43551 4.54072 4.59697 4.65374 4.66881 4.77310 4.79228 4.81385 4.82523 4.88800 4.91933 4.96474 5.00183 5.08943 5.10511 5.11903 5.16833 5.19785 5.36103 5.40682 5.41426 5.43531 5.55438 5.55563 5.68580 5.75275 6.17331 6.40787 7.07681 7.12961 7.74626 8.39784 9.20838 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002629 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.627456 B =10647.827186 C =11322.394213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.630 5.630 10 C 0.182 3.818 11 C -0.116 4.116 12 C -0.076 4.076 13 H 0.077 0.923 14 C -0.071 4.071 15 H 0.060 0.940 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.091 3.909 19 N -0.604 5.604 20 C 0.518 3.482 21 O -0.592 6.592 22 C -0.147 4.147 23 C 0.078 3.922 24 F -0.234 7.234 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.108 4.108 28 C 0.118 3.882 29 C 0.136 3.864 30 H 0.248 0.752 31 H 0.008 0.992 32 H 0.005 0.995 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.078 0.922 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.010 0.990 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -32.206 -3.125 32.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.154 4.154 12 C -0.096 4.096 13 H 0.095 0.905 14 C -0.091 4.091 15 H 0.078 0.922 16 C -0.150 4.150 17 C -0.165 4.165 18 C -0.030 4.030 19 N -0.335 5.335 20 C 0.307 3.693 21 O -0.472 6.472 22 C -0.150 4.150 23 C 0.024 3.976 24 F -0.215 7.215 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.145 4.145 28 C -0.005 4.005 29 C 0.011 3.989 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.143 0.857 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.096 0.904 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.027 0.973 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.637 -31.609 -3.131 31.806 hybrid contribution 0.956 2.249 0.113 2.447 sum -0.681 -29.359 -3.019 29.522 Atomic orbital electron populations 1.70191 1.06210 1.25351 1.57930 1.25668 0.96696 1.00960 1.02383 0.85069 0.77793 0.79153 0.77399 1.21316 1.21531 1.19514 1.19446 0.91247 0.84199 1.42909 0.90750 1.44833 1.02791 1.01888 1.86091 1.20958 0.83374 0.92586 0.97388 1.22715 0.97413 0.94198 1.01049 1.22228 0.94704 0.92956 0.99747 0.90456 1.21289 0.95333 0.92947 0.99487 0.92185 1.21589 0.96768 0.95064 1.01607 1.21929 0.97737 0.96050 1.00791 1.22381 0.84878 0.93189 1.02585 1.48202 1.17256 1.11942 1.56100 1.21034 0.81590 0.89757 0.76904 1.90683 1.37394 1.58746 1.60375 1.22959 1.03623 0.91414 0.97020 1.22315 0.87896 0.98640 0.88777 1.92770 1.59180 1.96687 1.72912 1.22865 0.96988 1.00736 0.95614 1.22933 0.93403 0.99812 1.00100 1.22961 0.96791 1.01543 0.93212 1.21532 0.98113 0.82059 0.98803 1.21775 0.95476 0.85190 0.96472 0.94259 0.97393 0.97657 0.89411 0.91383 0.90863 0.90682 0.87274 0.91524 0.89728 0.86809 0.87287 0.85727 0.91816 0.90915 0.86779 0.90133 0.86358 0.90381 0.92618 0.90943 0.97254 0.95353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 10.34 21.65 0.22 -58.97 16 2 C -0.06 -3.83 5.48 84.86 0.47 -3.37 16 3 Si 0.98 48.05 29.56 68.60 2.03 50.08 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.25 -15.02 10.27 84.04 0.86 -14.15 16 8 H 0.07 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -34.83 3.39 -691.53 -2.35 -37.17 16 10 C 0.18 9.35 5.37 86.73 0.47 9.82 16 11 C -0.12 -4.16 5.27 31.78 0.17 -3.99 16 12 C -0.08 -2.59 2.58 -9.32 -0.02 -2.62 16 13 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 14 C -0.07 -1.82 1.86 -10.72 -0.02 -1.84 16 15 H 0.06 1.72 8.07 -2.38 -0.02 1.70 16 16 C -0.11 -1.93 4.97 30.62 0.15 -1.78 16 17 C -0.13 -1.35 6.08 30.67 0.19 -1.16 16 18 C 0.09 1.03 5.11 86.36 0.44 1.47 16 19 N -0.60 -13.29 2.97 -818.89 -2.43 -15.73 16 20 C 0.52 13.73 6.45 87.66 0.57 14.29 16 21 O -0.59 -22.61 15.64 -3.04 -0.05 -22.65 16 22 C -0.15 -2.34 0.50 -52.40 -0.03 -2.37 16 23 C 0.08 0.86 6.40 71.98 0.46 1.32 16 24 F -0.23 -5.01 17.12 44.97 0.77 -4.24 16 25 C -0.12 -2.15 6.90 31.18 0.22 -1.93 16 26 C -0.13 -1.02 7.74 31.18 0.24 -0.78 16 27 C -0.11 -0.96 5.97 31.12 0.19 -0.78 16 28 C 0.12 3.24 5.49 86.36 0.47 3.72 16 29 C 0.14 6.11 6.07 86.94 0.53 6.64 16 30 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 32 H 0.01 0.30 7.37 -2.38 -0.02 0.28 16 33 H 0.09 2.67 8.09 -2.39 -0.02 2.65 16 34 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.29 7.21 -2.39 -0.02 1.27 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.63 3.14 -2.39 -0.01 0.62 16 41 H 0.11 0.63 5.68 -2.38 -0.01 0.61 16 42 H 0.12 0.46 7.31 -2.39 -0.02 0.45 16 43 H 0.06 1.50 7.76 -2.39 -0.02 1.48 16 44 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 45 H 0.11 0.31 7.60 -2.39 -0.02 0.29 16 46 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.12 0.18 7.21 -2.39 -0.02 0.16 16 48 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 49 H 0.06 1.98 6.64 -2.39 -0.02 1.96 16 50 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.01 0.45 7.99 -2.39 -0.02 0.43 16 52 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -84.17 389.99 4.43 -79.74 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.90 Total: 6.47 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.34 Total: 2.48 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.56 Total: -111.87 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.77 Total: -4.24 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -84.17 4.43 -79.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961233767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.804 kcal (2) G-P(sol) polarization free energy of solvation -84.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds