Wall clock time and date at job start Tue Mar 31 2020 21:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48495 * 109.47015 * 266.15313 * 3 2 1 5 5 H 1.48503 * 109.47278 * 26.15531 * 3 2 1 6 6 H 1.48500 * 109.46998 * 146.14974 * 3 2 1 7 7 C 1.38807 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00571 * 345.62784 * 7 2 1 9 9 N 1.36942 * 119.99732 * 165.62897 * 7 2 1 10 10 C 1.47427 * 125.64761 * 138.94411 * 9 7 2 11 11 C 1.54912 * 104.82944 * 204.15151 * 10 9 7 12 12 C 1.55159 * 101.58271 * 322.99232 * 11 10 9 13 13 C 1.47023 * 125.64613 * 318.97383 * 9 7 2 14 14 H 1.09000 * 110.01426 * 59.43334 * 13 9 7 15 15 C 1.52996 * 109.88173 * 298.33535 * 13 9 7 16 16 H 1.08999 * 109.49873 * 307.04674 * 15 13 9 17 17 C 1.53047 * 109.49479 * 186.98749 * 15 13 9 18 18 C 1.53043 * 109.53612 * 178.68485 * 17 15 13 19 19 C 1.53184 * 109.34022 * 61.34593 * 18 17 15 20 20 N 1.46937 * 108.77559 * 305.41422 * 19 18 17 21 21 C 1.34773 * 120.60837 * 233.53533 * 20 19 18 22 22 O 1.21280 * 120.00062 * 185.51581 * 21 20 19 23 23 C 1.50699 * 120.00049 * 5.51580 * 21 20 19 24 24 C 1.52996 * 112.85150 * 285.80983 * 23 21 20 25 25 F 1.39908 * 109.46777 * 305.50606 * 24 23 21 26 26 C 1.53780 * 113.61886 * 154.49841 * 23 21 20 27 27 C 1.53780 * 87.08497 * 220.02203 * 26 23 21 28 28 C 1.53789 * 87.08156 * 25.43103 * 27 26 23 29 29 C 1.46929 * 118.76080 * 53.55548 * 20 19 18 30 30 H 0.97007 * 119.99690 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36310 * 85.31570 * 10 9 7 32 32 H 1.08994 * 110.36865 * 322.99252 * 10 9 7 33 33 H 1.09001 * 111.00034 * 204.91841 * 11 10 9 34 34 H 1.09002 * 111.00449 * 81.06986 * 11 10 9 35 35 H 1.08996 * 110.72195 * 277.13903 * 12 11 10 36 36 H 1.08997 * 110.86981 * 153.93631 * 12 11 10 37 37 H 1.08995 * 109.45769 * 58.66318 * 17 15 13 38 38 H 1.09000 * 109.45812 * 298.69775 * 17 15 13 39 39 H 1.08997 * 109.49531 * 181.31789 * 18 17 15 40 40 H 1.09008 * 109.49594 * 301.38157 * 18 17 15 41 41 H 1.08994 * 109.58889 * 65.17089 * 19 18 17 42 42 H 1.09005 * 109.58621 * 185.59700 * 19 18 17 43 43 H 1.08998 * 109.47552 * 65.50411 * 24 23 21 44 44 H 1.09006 * 109.47583 * 185.50887 * 24 23 21 45 45 H 1.09004 * 113.61299 * 334.57224 * 26 23 21 46 46 H 1.08994 * 113.61595 * 105.47194 * 26 23 21 47 47 H 1.09005 * 113.61297 * 270.88482 * 27 26 23 48 48 H 1.08996 * 113.69321 * 139.98876 * 27 26 23 49 49 H 1.09000 * 113.61565 * 220.02243 * 28 27 26 50 50 H 1.08998 * 113.69080 * 89.12689 * 28 27 26 51 51 H 1.09007 * 109.58345 * 186.62939 * 29 20 19 52 52 H 1.08999 * 109.58506 * 66.20263 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5791 1.9994 -1.3969 5 1 1.4094 2.6748 0.6172 6 1 3.5047 1.4649 0.7799 7 6 2.0102 -1.2022 0.0005 8 1 1.4956 -2.1227 0.2331 9 7 3.3475 -1.2209 -0.2938 10 6 4.3678 -2.0310 0.3962 11 6 5.6999 -1.2766 0.1591 12 6 5.5112 -0.7596 -1.2916 13 6 4.0034 -0.4361 -1.3499 14 1 3.8458 0.6284 -1.1761 15 6 3.4393 -0.8290 -2.7167 16 1 3.5057 -1.9099 -2.8406 17 6 4.2448 -0.1381 -3.8195 18 6 3.7021 -0.5562 -5.1880 19 6 2.2397 -0.1168 -5.3098 20 7 1.4867 -0.6585 -4.1702 21 6 0.3697 -1.3858 -4.3692 22 8 -0.2983 -1.7428 -3.4220 23 6 -0.0494 -1.7555 -5.7687 24 6 -0.6370 -0.5749 -6.5444 25 9 -1.6889 -0.0133 -5.8126 26 6 -0.9080 -3.0294 -5.8386 27 6 -0.1168 -3.3988 -7.1045 28 6 1.0251 -2.5314 -6.5488 29 6 1.9741 -0.3920 -2.8099 30 1 -0.4850 0.8401 -0.0004 31 1 4.4154 -3.0301 -0.0368 32 1 4.1491 -2.0887 1.4624 33 1 6.5503 -1.9554 0.2245 34 1 5.8092 -0.4475 0.8582 35 1 5.7674 -1.5349 -2.0137 36 1 6.1052 0.1378 -1.4644 37 1 5.2924 -0.4283 -3.7401 38 1 4.1582 0.9429 -3.7094 39 1 4.2911 -0.0822 -5.9732 40 1 3.7660 -1.6397 -5.2892 41 1 2.1832 0.9716 -5.3003 42 1 1.8197 -0.4985 -6.2404 43 1 0.1365 0.1764 -6.7037 44 1 -1.0097 -0.9225 -7.5080 45 1 -0.7433 -3.7131 -5.0057 46 1 -1.9640 -2.8345 -6.0250 47 1 -0.5550 -3.0077 -8.0228 48 1 0.1323 -4.4577 -7.1718 49 1 1.5295 -1.9345 -7.3086 50 1 1.7191 -3.0778 -5.9101 51 1 1.3784 -0.9552 -2.0915 52 1 1.8963 0.6741 -2.5963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963366617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:09 Heat of formation + Delta-G solvation = -58.137035 kcal Electronic energy + Delta-G solvation = -33012.716381 eV Core-core repulsion = 28926.917379 eV Total energy + Delta-G solvation = -4085.799002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.71718 -41.84298 -40.28855 -38.72107 -37.81125 -34.83978 -34.08221 -32.39643 -31.73291 -30.09470 -28.43347 -26.91870 -26.68486 -26.33626 -25.03334 -23.67825 -22.42928 -21.57296 -21.39710 -20.72927 -19.51937 -18.73599 -18.23551 -17.44310 -17.32169 -16.96700 -16.69898 -16.41305 -16.36812 -15.70874 -15.42326 -15.40178 -15.25951 -15.00112 -14.91278 -14.56476 -14.25318 -13.88414 -13.76035 -13.67216 -13.46518 -13.19907 -13.03871 -12.95962 -12.88030 -12.82519 -12.43366 -12.31143 -12.12700 -12.05867 -12.00262 -11.87702 -11.79672 -11.72986 -11.48319 -11.37652 -11.32703 -11.16300 -11.10836 -10.44233 -10.39564 -9.49052 -8.66608 -8.18685 -5.63211 1.16711 1.27268 1.39127 1.69114 2.10329 2.33875 3.06171 3.19362 3.23634 3.38328 3.56975 3.65975 3.80474 3.82762 3.88451 3.95776 4.05464 4.07244 4.14333 4.20969 4.22853 4.36181 4.38425 4.42677 4.53250 4.56968 4.61378 4.62517 4.74580 4.77374 4.79259 4.88852 4.95770 4.97727 5.02031 5.06184 5.08378 5.10670 5.12283 5.15121 5.15859 5.28004 5.34322 5.42015 5.46870 5.57639 5.62164 5.69908 5.92751 6.15904 6.60207 6.87714 7.34178 7.53046 8.21397 8.99130 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004858 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.660489 B = 5761.770209 C = 6490.663369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.001 3.999 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.315 1.315 6 H -0.261 1.261 7 C -0.236 4.236 8 H 0.025 0.975 9 N -0.621 5.621 10 C 0.118 3.882 11 C -0.123 4.123 12 C -0.113 4.113 13 C 0.138 3.862 14 H 0.014 0.986 15 C -0.088 4.088 16 H 0.053 0.947 17 C -0.116 4.116 18 C -0.122 4.122 19 C 0.085 3.915 20 N -0.610 5.610 21 C 0.506 3.494 22 O -0.585 6.585 23 C -0.150 4.150 24 C 0.081 3.919 25 F -0.239 7.239 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.105 4.105 29 C 0.106 3.894 30 H 0.257 0.743 31 H 0.029 0.971 32 H 0.034 0.966 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.085 0.915 49 H 0.122 0.878 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -1.612 -22.078 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.196 4.196 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.244 1.244 6 H -0.186 1.186 7 C -0.366 4.366 8 H 0.043 0.957 9 N -0.347 5.347 10 C -0.006 4.006 11 C -0.162 4.162 12 C -0.151 4.151 13 C 0.032 3.968 14 H 0.031 0.969 15 C -0.109 4.109 16 H 0.072 0.928 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.036 4.036 20 N -0.342 5.342 21 C 0.295 3.705 22 O -0.464 6.464 23 C -0.153 4.153 24 C 0.027 3.973 25 F -0.220 7.220 26 C -0.163 4.163 27 C -0.154 4.154 28 C -0.143 4.143 29 C -0.016 4.016 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.120 0.880 44 H 0.150 0.850 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.136 0.864 48 H 0.104 0.896 49 H 0.140 0.860 50 H 0.096 0.904 51 H 0.111 0.889 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.837 -1.704 -21.513 24.614 hybrid contribution -1.014 0.966 1.539 2.081 sum 10.823 -0.738 -19.975 22.730 Atomic orbital electron populations 1.70004 1.07605 1.26765 1.53691 1.25984 0.95274 1.00543 0.97846 0.86111 0.78391 0.80285 0.78372 1.18845 1.24378 1.18576 1.17996 0.83240 0.91568 1.43786 0.95747 1.44809 1.03026 1.51555 1.35347 1.21921 0.89061 0.94210 0.95451 1.22723 0.96759 1.00078 0.96590 1.22610 0.92568 1.02399 0.97499 1.21497 0.93823 0.93667 0.87767 0.96875 1.21752 0.93464 0.99412 0.96238 0.92840 1.21684 1.00246 0.99590 0.93869 1.21905 0.94256 1.02358 0.97510 1.22361 0.93356 0.98800 0.89086 1.48375 1.25774 1.51988 1.08046 1.21228 0.80104 0.77413 0.91777 1.90788 1.54063 1.55620 1.45925 1.23013 1.02487 0.98056 0.91766 1.22251 0.87550 0.93398 0.94117 1.92773 1.61243 1.86984 1.80997 1.22830 0.99253 0.94362 0.99818 1.22886 0.94771 1.01323 0.96395 1.22993 0.95313 0.97312 0.98638 1.22032 0.97132 0.98692 0.83774 0.93384 0.95324 0.94760 0.87843 0.92189 0.89061 0.89103 0.88751 0.92805 0.86724 0.91018 0.91699 0.86422 0.87952 0.84984 0.92467 0.91115 0.86373 0.89608 0.86012 0.90425 0.88865 0.95886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -64.08 13.97 21.65 0.30 -63.78 16 2 C 0.00 0.09 3.54 84.86 0.30 0.39 16 3 Si 0.94 49.60 23.30 68.60 1.60 51.20 16 4 H -0.26 -12.92 5.67 99.48 0.56 -12.36 16 5 H -0.31 -17.01 7.11 99.48 0.71 -16.30 16 6 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -14.49 8.39 84.03 0.70 -13.78 16 8 H 0.02 1.74 8.06 -2.91 -0.02 1.72 16 9 N -0.62 -30.81 2.60 -668.27 -1.73 -32.54 16 10 C 0.12 4.76 7.23 86.86 0.63 5.39 16 11 C -0.12 -3.68 7.09 31.99 0.23 -3.45 16 12 C -0.11 -3.26 5.30 31.78 0.17 -3.09 16 13 C 0.14 5.65 1.99 45.34 0.09 5.74 16 14 H 0.01 0.62 3.59 -2.39 -0.01 0.61 16 15 C -0.09 -3.36 1.97 -10.72 -0.02 -3.38 16 16 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 17 C -0.12 -2.99 4.88 30.62 0.15 -2.84 16 18 C -0.12 -2.33 6.08 30.67 0.19 -2.15 16 19 C 0.09 2.02 5.23 86.36 0.45 2.47 16 20 N -0.61 -23.46 2.97 -818.89 -2.43 -25.90 16 21 C 0.51 21.33 6.34 87.66 0.56 21.89 16 22 O -0.59 -33.64 15.82 -3.03 -0.05 -33.68 16 23 C -0.15 -4.04 0.51 -52.40 -0.03 -4.06 16 24 C 0.08 1.75 6.51 71.98 0.47 2.22 16 25 F -0.24 -8.12 17.06 44.97 0.77 -7.35 16 26 C -0.12 -3.32 6.88 31.12 0.21 -3.11 16 27 C -0.12 -1.68 7.73 31.12 0.24 -1.44 16 28 C -0.11 -1.74 5.63 31.13 0.18 -1.57 16 29 C 0.11 5.05 4.08 86.36 0.35 5.40 16 30 H 0.26 16.98 8.31 -92.70 -0.77 16.21 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.23 7.29 -2.39 -0.02 2.21 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 1.90 6.70 -2.39 -0.02 1.88 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 42 H 0.12 1.88 3.07 -2.38 -0.01 1.87 16 43 H 0.10 1.68 6.28 -2.39 -0.02 1.67 16 44 H 0.13 1.58 7.32 -2.38 -0.02 1.56 16 45 H 0.06 1.93 7.89 -2.39 -0.02 1.91 16 46 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 47 H 0.12 0.95 7.61 -2.38 -0.02 0.93 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.12 0.97 7.02 -2.39 -0.02 0.96 16 50 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 51 H 0.09 5.67 3.85 -2.38 -0.01 5.66 16 52 H 0.02 1.19 5.40 -2.39 -0.01 1.18 16 Total: -1.00 -93.30 373.12 4.09 -89.21 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.77 Total: 18.23 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 4.87 Total: 4.62 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -3.87 Total: -122.22 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.05 Total: -33.68 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.77 Total: -7.35 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.60 Total: 51.20 kcal Total: -93.30 4.09 -89.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963366617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.075 kcal (2) G-P(sol) polarization free energy of solvation -93.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds