Wall clock time and date at job start Tue Mar 31 2020 21:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99728 * 2 1 4 4 H 1.48501 * 109.46932 * 239.99989 * 3 2 1 5 5 H 1.48499 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47201 * 120.00461 * 3 2 1 7 7 C 1.38810 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.47751 * 125.82414 * 11.46547 * 9 7 2 11 11 C 1.54906 * 104.84224 * 155.82923 * 10 9 7 12 12 C 1.55159 * 101.58131 * 37.09345 * 11 10 9 13 13 C 1.47020 * 125.64858 * 191.55752 * 9 7 2 14 14 H 1.09000 * 109.88071 * 300.59271 * 13 9 7 15 15 C 1.52990 * 109.88528 * 61.60680 * 13 9 7 16 16 H 1.09000 * 109.49976 * 296.51397 * 15 13 9 17 17 C 1.53042 * 109.52580 * 56.59516 * 15 13 9 18 18 C 1.53036 * 109.53933 * 181.33602 * 17 15 13 19 19 C 1.53621 * 109.24182 * 298.50550 * 18 17 15 20 20 N 1.46935 * 108.54197 * 54.86088 * 19 18 17 21 21 C 1.34768 * 120.62955 * 126.36695 * 20 19 18 22 22 O 1.21284 * 119.99702 * 184.71147 * 21 20 19 23 23 C 1.50699 * 120.00457 * 4.43334 * 21 20 19 24 24 C 1.52996 * 112.85017 * 63.35672 * 23 21 20 25 25 F 1.39897 * 109.47430 * 174.54047 * 24 23 21 26 26 C 1.53785 * 113.61259 * 292.16182 * 23 21 20 27 27 C 1.53955 * 87.01887 * 220.04627 * 26 23 21 28 28 C 1.53782 * 87.11261 * 25.36510 * 27 26 23 29 29 C 1.46927 * 118.73287 * 306.09327 * 20 19 18 30 30 H 0.96997 * 119.99796 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.29059 * 37.02235 * 10 9 7 32 32 H 1.09001 * 110.43147 * 274.70968 * 10 9 7 33 33 H 1.08999 * 111.00659 * 279.01710 * 11 10 9 34 34 H 1.08995 * 111.03666 * 155.18306 * 11 10 9 35 35 H 1.09003 * 110.71978 * 206.13384 * 12 11 10 36 36 H 1.09002 * 110.71811 * 82.86510 * 12 11 10 37 37 H 1.09005 * 109.45906 * 301.35816 * 17 15 13 38 38 H 1.09003 * 109.45888 * 61.31064 * 17 15 13 39 39 H 1.08996 * 109.50078 * 58.59015 * 18 17 15 40 40 H 1.09008 * 109.49766 * 178.65052 * 18 17 15 41 41 H 1.09003 * 109.74593 * 295.12386 * 19 18 17 42 42 H 1.09002 * 109.66650 * 174.54633 * 19 18 17 43 43 H 1.09000 * 109.46892 * 294.54174 * 24 23 21 44 44 H 1.09007 * 109.46898 * 54.53751 * 24 23 21 45 45 H 1.08991 * 113.61451 * 334.56568 * 26 23 21 46 46 H 1.09001 * 113.61420 * 105.47159 * 26 23 21 47 47 H 1.09003 * 113.53871 * 270.81604 * 27 26 23 48 48 H 1.08996 * 113.74341 * 139.94834 * 27 26 23 49 49 H 1.09005 * 113.61678 * 220.09525 * 28 27 26 50 50 H 1.08992 * 113.61829 * 89.18376 * 28 27 26 51 51 H 1.09004 * 109.58437 * 173.64750 * 29 20 19 52 52 H 1.08999 * 109.58556 * 294.06775 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1237 -2.5501 -0.2359 11 6 -0.2827 -4.0059 -0.7407 12 6 0.7733 -4.7506 0.1182 13 6 1.9109 -3.7152 0.2416 14 1 2.6812 -3.9205 -0.5018 15 6 2.5153 -3.7711 1.6460 16 1 3.3347 -3.0559 1.7182 17 6 1.4412 -3.4234 2.6793 18 6 2.0535 -3.4467 4.0816 19 6 2.5743 -4.8601 4.3832 20 7 3.5015 -5.2545 3.3138 21 6 4.7466 -5.6792 3.6065 22 8 5.5307 -5.9203 2.7132 23 6 5.1667 -5.8484 5.0438 24 6 4.3577 -6.9203 5.7769 25 9 4.8845 -7.1063 7.0595 26 6 5.2730 -4.5220 5.8147 27 6 6.5388 -5.0994 6.4739 28 6 6.6868 -5.9898 5.2288 29 6 3.0433 -5.1829 1.9196 30 1 -0.4850 0.8400 0.0004 31 1 -0.4633 -1.8459 -0.9954 32 1 -0.6794 -2.4070 0.6908 33 1 -0.0455 -4.0795 -1.8020 34 1 -1.2857 -4.3823 -0.5398 35 1 1.1224 -5.6481 -0.3924 36 1 0.3679 -4.9970 1.0996 37 1 1.0463 -2.4288 2.4719 38 1 0.6337 -4.1534 2.6233 39 1 2.8771 -2.7345 4.1309 40 1 1.2938 -3.1756 4.8149 41 1 1.7396 -5.5602 4.4197 42 1 3.0975 -4.8620 5.3394 43 1 3.3182 -6.6017 5.8538 44 1 4.4105 -7.8576 5.2230 45 1 5.4675 -3.6603 5.1763 46 1 4.4529 -4.3560 6.5133 47 1 6.3376 -5.6575 7.3883 48 1 7.3435 -4.3734 6.5896 49 1 7.0063 -7.0071 5.4549 50 1 7.2685 -5.5301 4.4299 51 1 3.8760 -5.3978 1.2498 52 1 2.2460 -5.9087 1.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963366620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:23 Heat of formation + Delta-G solvation = -56.071475 kcal Electronic energy + Delta-G solvation = -31948.060881 eV Core-core repulsion = 27862.351449 eV Total energy + Delta-G solvation = -4085.709432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.76533 -41.89550 -40.19953 -38.59305 -37.72238 -34.71272 -33.77121 -32.53823 -31.23422 -30.33043 -28.16960 -26.80752 -26.77450 -26.42227 -24.78751 -23.88150 -22.63382 -21.96429 -21.08053 -19.99497 -19.59580 -18.69239 -18.34345 -17.45284 -17.01443 -16.92333 -16.67561 -16.32288 -16.24436 -15.85357 -15.60862 -15.52846 -15.21579 -14.68210 -14.54496 -14.33217 -14.07376 -13.77436 -13.67633 -13.58602 -13.39915 -13.25155 -13.18282 -13.06020 -12.87416 -12.73582 -12.47871 -12.22451 -12.07051 -11.99200 -11.91274 -11.80239 -11.74540 -11.57602 -11.45378 -11.27854 -11.22949 -11.12563 -10.93158 -10.69829 -10.62110 -9.63480 -8.76084 -7.82872 -5.17002 1.42462 1.43273 1.46485 1.49923 1.92670 2.48895 3.13425 3.27609 3.34202 3.41925 3.55036 3.66065 3.79859 3.81886 3.93623 3.98768 4.09496 4.12853 4.22439 4.27522 4.32060 4.35351 4.37962 4.45373 4.54137 4.58444 4.62206 4.71555 4.74969 4.77599 4.81918 4.84614 4.86392 4.93635 4.94386 5.04665 5.09525 5.14546 5.20462 5.23255 5.31979 5.41490 5.46661 5.49619 5.55175 5.60260 5.69040 5.74422 5.84387 6.28522 6.38358 7.07596 7.14872 7.83554 8.50179 9.26453 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003390 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.311250 B = 8258.642096 C = 9101.957700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.055 4.055 3 Si 0.962 3.038 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.226 4.226 8 H 0.063 0.937 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.157 3.843 14 H 0.016 0.984 15 C -0.091 4.091 16 H 0.026 0.974 17 C -0.095 4.095 18 C -0.129 4.129 19 C 0.100 3.900 20 N -0.602 5.602 21 C 0.528 3.472 22 O -0.582 6.582 23 C -0.140 4.140 24 C 0.091 3.909 25 F -0.208 7.208 26 C -0.120 4.120 27 C -0.134 4.134 28 C -0.114 4.114 29 C 0.124 3.876 30 H 0.246 0.754 31 H 0.034 0.966 32 H 0.000 1.000 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -16.068 14.985 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.248 4.248 3 Si 0.791 3.209 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.152 4.152 13 C 0.050 3.950 14 H 0.034 0.966 15 C -0.113 4.113 16 H 0.045 0.955 17 C -0.133 4.133 18 C -0.167 4.167 19 C -0.021 4.021 20 N -0.333 5.333 21 C 0.317 3.683 22 O -0.462 6.462 23 C -0.144 4.144 24 C 0.036 3.964 25 F -0.189 7.189 26 C -0.158 4.158 27 C -0.171 4.171 28 C -0.152 4.152 29 C 0.001 3.999 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.363 -15.967 14.526 22.022 hybrid contribution 0.624 1.806 -0.696 2.033 sum 4.987 -14.162 13.830 20.413 Atomic orbital electron populations 1.70109 1.05822 1.25001 1.58186 1.25424 0.96382 1.00127 1.02907 0.85406 0.77406 0.80203 0.77860 1.20957 1.21737 1.20923 1.19073 0.90118 0.83961 1.42434 0.91941 1.44723 1.04902 1.01257 1.82233 1.21303 0.84008 0.92920 0.96531 1.22884 0.99473 0.96169 0.99039 1.22656 0.94889 0.96815 1.00827 1.21081 0.94731 0.86145 0.93048 0.96587 1.21699 0.97351 0.95168 0.97040 0.95493 1.21318 0.97164 1.01244 0.93569 1.21959 1.00650 0.96757 0.97329 1.22350 0.93641 0.95887 0.90216 1.48234 1.13046 1.63906 1.08090 1.20601 0.80918 0.75946 0.90864 1.90671 1.52401 1.53224 1.49952 1.22823 0.99586 1.00429 0.91543 1.21794 0.97455 0.98357 0.78771 1.92733 1.88734 1.96367 1.41069 1.23022 1.00420 0.93839 0.98504 1.23025 0.97409 0.98909 0.97754 1.22765 0.92114 1.01724 0.98603 1.21614 0.99521 0.96646 0.82075 0.94496 0.94784 0.98186 0.92490 0.89688 0.89486 0.89598 0.94474 0.90883 0.93713 0.88935 0.88199 0.87348 0.87141 0.89222 0.90955 0.88109 0.87507 0.90684 0.90193 0.91047 0.91598 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.60 10.48 21.65 0.23 -55.37 16 2 C -0.05 -3.10 5.48 84.86 0.46 -2.64 16 3 Si 0.96 46.36 29.55 68.60 2.03 48.39 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.23 -12.63 9.89 84.03 0.83 -11.80 16 8 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.61 -30.02 2.23 -667.46 -1.49 -31.51 16 10 C 0.18 8.39 5.49 86.79 0.48 8.87 16 11 C -0.14 -4.76 7.09 31.99 0.23 -4.54 16 12 C -0.11 -3.46 5.08 31.78 0.16 -3.30 16 13 C 0.16 6.16 2.96 45.34 0.13 6.30 16 14 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 15 C -0.09 -3.20 2.10 -10.72 -0.02 -3.22 16 16 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 17 C -0.10 -3.08 4.75 30.62 0.15 -2.93 16 18 C -0.13 -3.12 6.10 30.82 0.19 -2.93 16 19 C 0.10 1.76 5.00 86.51 0.43 2.20 16 20 N -0.60 -14.63 2.97 -818.05 -2.43 -17.06 16 21 C 0.53 14.05 6.71 87.66 0.59 14.64 16 22 O -0.58 -20.75 15.51 -3.04 -0.05 -20.80 16 23 C -0.14 -2.66 0.70 -52.40 -0.04 -2.69 16 24 C 0.09 1.22 6.66 71.98 0.48 1.70 16 25 F -0.21 -3.15 14.58 44.97 0.66 -2.49 16 26 C -0.12 -2.05 5.84 31.18 0.18 -1.87 16 27 C -0.13 -2.13 7.56 31.18 0.24 -1.90 16 28 C -0.11 -2.29 6.70 31.12 0.21 -2.08 16 29 C 0.12 3.53 5.55 86.36 0.48 4.01 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.03 1.87 6.71 -2.39 -0.02 1.85 16 32 H 0.00 0.01 8.13 -2.39 -0.02 -0.01 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.28 5.53 -2.39 -0.01 2.27 16 37 H 0.04 1.60 7.49 -2.38 -0.02 1.58 16 38 H 0.07 2.06 6.20 -2.39 -0.01 2.05 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.42 3.27 -2.39 -0.01 1.41 16 43 H 0.11 0.97 5.85 -2.39 -0.01 0.96 16 44 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 46 H 0.10 1.28 7.10 -2.39 -0.02 1.27 16 47 H 0.11 1.52 6.39 -2.39 -0.02 1.51 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.08 1.47 8.10 -2.38 -0.02 1.45 16 50 H 0.07 1.76 7.66 -2.39 -0.02 1.74 16 51 H 0.07 2.17 7.00 -2.38 -0.02 2.16 16 52 H 0.09 2.19 6.81 -2.39 -0.02 2.17 16 Total: -1.00 -70.93 382.13 5.03 -65.90 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.91 Total: 15.14 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.18 Total: -2.20 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.69 Total: -103.94 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.66 Total: -2.49 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -70.93 5.03 -65.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963366620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.831 kcal (2) G-P(sol) polarization free energy of solvation -70.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds