Wall clock time and date at job start Tue Mar 31 2020 20:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00194 * 2 1 4 4 O 1.21275 * 119.99999 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99794 * 0.02562 * 3 2 1 6 6 H 1.09008 * 110.41435 * 42.29592 * 5 3 2 7 7 C 1.54905 * 110.36896 * 279.99789 * 5 3 2 8 8 C 1.55163 * 101.62023 * 204.17242 * 7 5 3 9 9 C 1.54322 * 102.93814 * 35.47899 * 8 7 5 10 10 N 1.47016 * 107.27685 * 337.81228 * 9 8 7 11 11 C 1.34772 * 125.65381 * 178.99600 * 10 9 8 12 12 N 1.34778 * 119.99535 * 359.97281 * 11 10 9 13 13 O 1.21580 * 120.00635 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00221 * 180.02562 * 2 1 3 15 15 C 1.52992 * 109.47251 * 120.77754 * 14 2 1 16 16 C 1.53005 * 109.47139 * 300.00017 * 15 14 2 17 17 C 1.53001 * 109.47145 * 300.00184 * 16 15 14 18 18 N 1.46497 * 109.47421 * 180.02562 * 17 16 15 19 19 C 1.36934 * 119.99916 * 84.99590 * 18 17 16 20 20 H 1.08000 * 120.00494 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99576 * 180.02562 * 19 18 17 22 22 N 1.31612 * 120.00141 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99789 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47039 * 89.99492 * 23 21 19 25 25 H 1.48497 * 109.47061 * 210.00100 * 23 21 19 26 26 H 1.48505 * 109.47083 * 330.00260 * 23 21 19 27 27 C 1.52998 * 109.47030 * 59.99652 * 17 16 15 28 28 C 1.52996 * 109.47348 * 300.00080 * 27 17 16 29 29 H 1.09004 * 109.47177 * 84.06819 * 1 2 3 30 30 H 1.08998 * 109.47426 * 204.07355 * 1 2 3 31 31 H 1.08997 * 109.47093 * 324.07358 * 1 2 3 32 32 H 1.09007 * 111.00340 * 86.07870 * 7 5 3 33 33 H 1.08996 * 111.00508 * 322.26561 * 7 5 3 34 34 H 1.08994 * 110.71869 * 153.85099 * 8 7 5 35 35 H 1.09004 * 110.71483 * 277.12246 * 8 7 5 36 36 H 1.09005 * 109.87814 * 97.23162 * 9 8 7 37 37 H 1.09004 * 109.88282 * 218.38630 * 9 8 7 38 38 H 0.96999 * 120.00148 * 0.02562 * 12 11 10 39 39 H 0.97003 * 119.99762 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.46794 * 240.78113 * 14 2 1 41 41 H 1.09002 * 109.47483 * 60.00066 * 15 14 2 42 42 H 1.09006 * 109.46915 * 180.02562 * 15 14 2 43 43 H 1.08999 * 109.47223 * 180.02562 * 16 15 14 44 44 H 1.08997 * 109.46827 * 60.00176 * 16 15 14 45 45 H 1.09006 * 109.47275 * 300.00343 * 17 16 15 46 46 H 0.96998 * 119.99541 * 265.00451 * 18 17 16 47 47 H 0.97000 * 120.00198 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.47260 * 180.02562 * 27 17 16 49 49 H 1.09002 * 109.47412 * 60.00231 * 27 17 16 50 50 H 1.08997 * 109.47467 * 299.99869 * 28 27 17 51 51 H 1.09008 * 109.46842 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5411 2.4236 0.6884 7 6 0.8969 2.8135 -1.4293 8 6 0.7519 4.3563 -1.3502 9 6 1.9184 4.7661 -0.4266 10 7 2.2824 3.5838 0.3677 11 6 3.2719 3.5251 1.2809 12 7 4.0260 4.6145 1.5282 13 8 3.4844 2.4896 1.8815 14 6 2.1975 -1.2687 -0.0006 15 6 3.0917 -1.3408 -1.2399 16 6 2.2268 -1.2507 -2.4988 17 6 1.2327 -2.4135 -2.5189 18 7 0.4049 -2.3277 -3.7245 19 6 0.8535 -2.8628 -4.9025 20 1 1.8172 -3.3485 -4.9427 21 6 0.0693 -2.7810 -6.0450 22 7 -1.1054 -2.1895 -5.9960 23 14 0.6808 -3.5116 -7.6518 24 1 0.2405 -4.9263 -7.7516 25 1 0.1241 -2.7383 -8.7908 26 1 2.1641 -3.4510 -7.6903 27 6 0.3385 -2.3415 -1.2795 28 6 1.2034 -2.4316 -0.0206 29 1 -0.3634 0.1062 -1.0222 30 1 -0.3634 -0.9382 0.4192 31 1 -0.3633 0.8321 0.6030 32 1 -0.0631 2.3410 -1.6373 33 1 1.6398 2.5286 -2.1743 34 1 0.8650 4.8053 -2.3369 35 1 -0.2054 4.6314 -0.9075 36 1 2.7705 5.0868 -1.0259 37 1 1.6022 5.5735 0.2339 38 1 3.8563 5.4408 1.0492 39 1 4.7384 4.5722 2.1851 40 1 2.8136 -1.3329 0.8963 41 1 3.8000 -0.5123 -1.2256 42 1 3.6364 -2.2850 -1.2405 43 1 2.8638 -1.3025 -3.3817 44 1 1.6818 -0.3067 -2.4984 45 1 1.7777 -3.3576 -2.5192 46 1 -0.4608 -1.8917 -3.6884 47 1 -1.6532 -2.1320 -6.7944 48 1 -0.3695 -3.1702 -1.2935 49 1 -0.2066 -1.3975 -1.2790 50 1 1.7483 -3.3755 -0.0210 51 1 0.5662 -2.3798 0.8623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964478669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:54 Heat of formation + Delta-G solvation = -25.724785 kcal Electronic energy + Delta-G solvation = -32062.265345 eV Core-core repulsion = 27997.791806 eV Total energy + Delta-G solvation = -4064.473539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.99149 -39.71485 -37.82393 -37.03967 -34.94377 -33.73338 -33.15360 -31.31692 -31.13786 -30.61712 -29.46870 -27.91529 -26.14047 -24.36825 -23.47210 -22.19010 -22.05864 -21.44068 -20.34804 -19.43599 -18.83049 -17.91070 -17.47313 -17.05570 -16.66142 -15.88954 -15.60386 -15.34349 -15.04138 -14.70087 -14.51870 -14.21463 -13.95007 -13.62484 -13.48859 -13.38923 -13.29532 -13.00376 -12.61806 -12.48640 -12.25686 -12.08096 -11.89585 -11.84225 -11.67077 -11.52978 -11.41976 -11.09929 -10.96834 -10.84624 -10.49208 -10.27674 -10.14916 -10.08379 -9.94145 -9.69073 -9.57822 -9.51272 -9.33090 -8.80932 -8.63466 -8.25399 -6.89529 -5.73642 -3.00685 2.48360 2.93759 3.18489 3.34715 3.45058 3.50736 3.52011 4.05139 4.26731 4.40266 4.57350 4.61916 4.69789 4.86629 5.04451 5.13237 5.13419 5.17146 5.29085 5.33299 5.45487 5.48901 5.57272 5.60941 5.65940 5.73234 5.78506 5.82856 5.87568 5.92087 5.96014 6.01757 6.07030 6.15070 6.21659 6.39717 6.53293 6.63484 6.67266 6.71327 6.78809 6.84869 6.97514 7.12028 7.24120 7.64901 7.74563 7.82363 8.45973 8.48055 8.68818 9.56928 10.16240 10.51075 11.49336 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003268 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.248960 B = 8565.520352 C = 9369.725512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.515 3.485 4 O -0.503 6.503 5 C 0.137 3.863 6 H 0.093 0.907 7 C -0.123 4.123 8 C -0.128 4.128 9 C 0.101 3.899 10 N -0.624 5.624 11 C 0.725 3.275 12 N -0.868 5.868 13 O -0.565 6.565 14 C 0.159 3.841 15 C -0.135 4.135 16 C -0.124 4.124 17 C 0.180 3.820 18 N -0.725 5.725 19 C -0.232 4.232 20 H 0.068 0.932 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.903 3.097 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.149 4.149 28 C -0.121 4.121 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.392 0.608 39 H 0.413 0.587 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.042 0.958 46 H 0.382 0.618 47 H 0.253 0.747 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 15.607 15.740 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.338 5.338 3 C 0.300 3.700 4 O -0.377 6.377 5 C 0.029 3.971 6 H 0.111 0.889 7 C -0.162 4.162 8 C -0.166 4.166 9 C -0.022 4.022 10 N -0.364 5.364 11 C 0.426 3.574 12 N -0.437 5.437 13 O -0.439 6.439 14 C 0.056 3.944 15 C -0.173 4.173 16 C -0.165 4.165 17 C 0.070 3.930 18 N -0.365 5.365 19 C -0.363 4.363 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.187 4.187 28 C -0.160 4.160 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.220 0.780 39 H 0.245 0.755 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.215 0.785 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.021 14.715 15.984 21.935 hybrid contribution 0.187 0.222 -1.004 1.045 sum 3.208 14.936 14.980 21.396 Atomic orbital electron populations 1.22251 0.80511 1.03169 1.01833 1.47699 1.06390 1.05581 1.74106 1.20147 0.88143 0.84603 0.77092 1.90684 1.13458 1.86555 1.46980 1.21730 0.91687 0.85950 0.97741 0.88908 1.22788 1.03222 0.95976 0.94191 1.22609 0.98020 0.95699 1.00237 1.22011 0.98225 0.88139 0.93867 1.47287 1.35078 1.12178 1.41906 1.15346 0.78619 0.83768 0.79703 1.42934 1.39355 1.13187 1.48239 1.91018 1.70942 1.29136 1.52846 1.20959 0.92902 0.82086 0.98438 1.21952 0.98475 1.02267 0.94654 1.22113 0.98241 1.00460 0.95653 1.20192 0.91144 0.95455 0.86178 1.42402 1.20102 1.69014 1.04966 1.19251 1.01145 1.28781 0.87154 0.91359 1.24696 0.96815 1.01698 0.97888 1.69648 1.11386 1.49044 1.28346 0.86235 0.77891 0.78523 0.83860 1.21831 1.21863 1.20847 1.22412 0.98707 1.03340 0.94208 1.21810 0.97927 0.97751 0.98478 0.91348 0.89535 0.92342 0.88496 0.89617 0.89331 0.90058 0.91543 0.91424 0.78006 0.75535 0.91508 0.90684 0.91947 0.92639 0.93090 0.94028 0.78519 0.93673 0.91975 0.90013 0.90576 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 7.68 59.84 0.46 1.17 16 2 N -0.60 -8.54 2.25 -173.94 -0.39 -8.93 16 3 C 0.51 8.13 5.81 -10.99 -0.06 8.07 16 4 O -0.50 -9.94 11.82 -18.49 -0.22 -10.16 16 5 C 0.14 1.64 2.74 -67.55 -0.19 1.46 16 6 H 0.09 0.97 6.54 -51.92 -0.34 0.63 16 7 C -0.12 -1.22 6.26 -24.58 -0.15 -1.38 16 8 C -0.13 -0.87 6.95 -24.89 -0.17 -1.04 16 9 C 0.10 0.75 6.15 -3.07 -0.02 0.73 16 10 N -0.62 -7.30 3.14 -170.00 -0.53 -7.84 16 11 C 0.73 10.13 8.01 -86.92 -0.70 9.43 16 12 N -0.87 -7.82 8.83 27.63 0.24 -7.57 16 13 O -0.56 -10.67 14.56 -18.76 -0.27 -10.95 16 14 C 0.16 2.38 2.94 -67.93 -0.20 2.18 16 15 C -0.13 -2.28 5.23 -26.73 -0.14 -2.42 16 16 C -0.12 -2.37 5.34 -26.73 -0.14 -2.51 16 17 C 0.18 3.57 2.77 -67.93 -0.19 3.38 16 18 N -0.72 -17.89 5.12 -53.42 -0.27 -18.16 16 19 C -0.23 -6.44 9.93 -15.06 -0.15 -6.59 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.94 -27.88 13.06 55.49 0.72 -27.16 16 23 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 27 C -0.15 -2.33 4.73 -26.73 -0.13 -2.46 16 28 C -0.12 -1.61 4.91 -26.73 -0.13 -1.74 16 29 H 0.07 0.78 6.47 -51.93 -0.34 0.45 16 30 H 0.09 0.88 4.95 -51.93 -0.26 0.63 16 31 H 0.06 0.51 6.27 -51.93 -0.33 0.19 16 32 H 0.10 0.86 7.76 -51.92 -0.40 0.45 16 33 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.39 2.28 7.81 -40.82 -0.32 1.96 16 39 H 0.41 3.26 8.93 -40.82 -0.36 2.90 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.43 6.11 -51.93 -0.32 1.11 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.99 7.60 -51.93 -0.39 0.60 16 45 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 46 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.08 1.21 3.66 -51.93 -0.19 1.02 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.06 0.72 6.89 -51.92 -0.36 0.36 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -37.35 380.96 -10.12 -47.47 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -8.11 Total: 12.32 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -2.01 Total: 7.74 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.23 Total: -69.66 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.49 Total: -21.11 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.35 -10.12 -47.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964478669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.749 kcal (2) G-P(sol) polarization free energy of solvation -37.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds