Wall clock time and date at job start Tue Mar 31 2020 20:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00194 * 2 1 4 4 O 1.21275 * 119.99999 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99794 * 0.02562 * 3 2 1 6 6 H 1.09008 * 110.41435 * 42.29592 * 5 3 2 7 7 C 1.54905 * 110.36896 * 279.99789 * 5 3 2 8 8 C 1.55163 * 101.62023 * 204.17242 * 7 5 3 9 9 C 1.54322 * 102.93814 * 35.47899 * 8 7 5 10 10 N 1.47016 * 107.27685 * 337.81228 * 9 8 7 11 11 C 1.34772 * 125.65381 * 178.99600 * 10 9 8 12 12 N 1.34778 * 119.99535 * 359.97281 * 11 10 9 13 13 O 1.21580 * 120.00635 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00221 * 180.02562 * 2 1 3 15 15 C 1.52992 * 109.47251 * 120.77754 * 14 2 1 16 16 C 1.53005 * 109.47139 * 300.00017 * 15 14 2 17 17 C 1.53001 * 109.47145 * 300.00184 * 16 15 14 18 18 N 1.46497 * 109.47421 * 180.02562 * 17 16 15 19 19 C 1.36934 * 119.99916 * 84.99590 * 18 17 16 20 20 H 1.08000 * 120.00494 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99576 * 180.02562 * 19 18 17 22 22 N 1.31612 * 120.00141 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99789 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47039 * 89.99492 * 23 21 19 25 25 H 1.48497 * 109.47061 * 210.00100 * 23 21 19 26 26 H 1.48505 * 109.47083 * 330.00260 * 23 21 19 27 27 C 1.52998 * 109.47030 * 59.99652 * 17 16 15 28 28 C 1.52996 * 109.47348 * 300.00080 * 27 17 16 29 29 H 1.09004 * 109.47177 * 84.06819 * 1 2 3 30 30 H 1.08998 * 109.47426 * 204.07355 * 1 2 3 31 31 H 1.08997 * 109.47093 * 324.07358 * 1 2 3 32 32 H 1.09007 * 111.00340 * 86.07870 * 7 5 3 33 33 H 1.08996 * 111.00508 * 322.26561 * 7 5 3 34 34 H 1.08994 * 110.71869 * 153.85099 * 8 7 5 35 35 H 1.09004 * 110.71483 * 277.12246 * 8 7 5 36 36 H 1.09005 * 109.87814 * 97.23162 * 9 8 7 37 37 H 1.09004 * 109.88282 * 218.38630 * 9 8 7 38 38 H 0.96999 * 120.00148 * 0.02562 * 12 11 10 39 39 H 0.97003 * 119.99762 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.46794 * 240.78113 * 14 2 1 41 41 H 1.09002 * 109.47483 * 60.00066 * 15 14 2 42 42 H 1.09006 * 109.46915 * 180.02562 * 15 14 2 43 43 H 1.08999 * 109.47223 * 180.02562 * 16 15 14 44 44 H 1.08997 * 109.46827 * 60.00176 * 16 15 14 45 45 H 1.09006 * 109.47275 * 300.00343 * 17 16 15 46 46 H 0.96998 * 119.99541 * 265.00451 * 18 17 16 47 47 H 0.97000 * 120.00198 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.47260 * 180.02562 * 27 17 16 49 49 H 1.09002 * 109.47412 * 60.00231 * 27 17 16 50 50 H 1.08997 * 109.47467 * 299.99869 * 28 27 17 51 51 H 1.09008 * 109.46842 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5411 2.4236 0.6884 7 6 0.8969 2.8135 -1.4293 8 6 0.7519 4.3563 -1.3502 9 6 1.9184 4.7661 -0.4266 10 7 2.2824 3.5838 0.3677 11 6 3.2719 3.5251 1.2809 12 7 4.0260 4.6145 1.5282 13 8 3.4844 2.4896 1.8815 14 6 2.1975 -1.2687 -0.0006 15 6 3.0917 -1.3408 -1.2399 16 6 2.2268 -1.2507 -2.4988 17 6 1.2327 -2.4135 -2.5189 18 7 0.4049 -2.3277 -3.7245 19 6 0.8535 -2.8628 -4.9025 20 1 1.8172 -3.3485 -4.9427 21 6 0.0693 -2.7810 -6.0450 22 7 -1.1054 -2.1895 -5.9960 23 14 0.6808 -3.5116 -7.6518 24 1 0.2405 -4.9263 -7.7516 25 1 0.1241 -2.7383 -8.7908 26 1 2.1641 -3.4510 -7.6903 27 6 0.3385 -2.3415 -1.2795 28 6 1.2034 -2.4316 -0.0206 29 1 -0.3634 0.1062 -1.0222 30 1 -0.3634 -0.9382 0.4192 31 1 -0.3633 0.8321 0.6030 32 1 -0.0631 2.3410 -1.6373 33 1 1.6398 2.5286 -2.1743 34 1 0.8650 4.8053 -2.3369 35 1 -0.2054 4.6314 -0.9075 36 1 2.7705 5.0868 -1.0259 37 1 1.6022 5.5735 0.2339 38 1 3.8563 5.4408 1.0492 39 1 4.7384 4.5722 2.1851 40 1 2.8136 -1.3329 0.8963 41 1 3.8000 -0.5123 -1.2256 42 1 3.6364 -2.2850 -1.2405 43 1 2.8638 -1.3025 -3.3817 44 1 1.6818 -0.3067 -2.4984 45 1 1.7777 -3.3576 -2.5192 46 1 -0.4608 -1.8917 -3.6884 47 1 -1.6532 -2.1320 -6.7944 48 1 -0.3695 -3.1702 -1.2935 49 1 -0.2066 -1.3975 -1.2790 50 1 1.7483 -3.3755 -0.0210 51 1 0.5662 -2.3798 0.8623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964478669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:53 Heat of formation + Delta-G solvation = -52.726374 kcal Electronic energy + Delta-G solvation = -32063.436222 eV Core-core repulsion = 27997.791806 eV Total energy + Delta-G solvation = -4065.644416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04283 -40.82606 -39.01850 -38.08172 -36.51999 -34.87846 -34.58400 -32.84966 -32.14262 -31.93484 -30.53553 -29.33413 -27.35628 -25.63212 -24.98056 -23.58448 -23.13331 -22.30666 -21.66315 -20.60734 -19.93234 -19.09939 -18.86775 -18.42852 -17.55395 -17.17226 -16.72900 -16.69008 -16.31747 -15.84192 -15.70020 -15.43161 -15.26818 -15.22085 -14.75133 -14.42827 -14.37711 -14.16208 -13.89533 -13.72128 -13.51348 -13.27043 -13.10720 -13.01225 -12.84583 -12.81806 -12.74385 -12.57907 -12.20406 -12.14563 -12.03885 -11.90248 -11.73633 -11.37467 -11.32444 -11.24915 -11.05359 -10.86568 -10.62481 -10.39681 -9.56340 -9.42183 -8.94926 -7.92134 -5.18418 1.46779 1.47172 1.55518 1.60628 1.82095 2.15351 2.33540 2.57031 3.29150 3.40442 3.53588 3.62092 3.71306 3.77359 3.88880 3.94330 4.02797 4.16843 4.29511 4.32986 4.37925 4.41937 4.44552 4.60973 4.61821 4.66145 4.69859 4.73833 4.84264 4.84969 4.87731 4.93094 5.04524 5.07769 5.13811 5.19766 5.23099 5.26931 5.29660 5.31201 5.49938 5.56684 5.64995 5.78557 5.94484 6.04146 6.31538 6.54468 7.00368 7.36027 7.37755 7.74052 8.14909 8.39804 9.30987 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003268 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.248960 B = 8565.520352 C = 9369.725512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.604 5.604 3 C 0.502 3.498 4 O -0.552 6.552 5 C 0.135 3.865 6 H 0.115 0.885 7 C -0.122 4.122 8 C -0.117 4.117 9 C 0.094 3.906 10 N -0.628 5.628 11 C 0.713 3.287 12 N -0.849 5.849 13 O -0.623 6.623 14 C 0.160 3.840 15 C -0.125 4.125 16 C -0.107 4.107 17 C 0.177 3.823 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.065 0.935 21 C -0.071 4.071 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.277 1.277 27 C -0.139 4.139 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.410 0.590 39 H 0.418 0.582 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.022 0.978 44 H 0.044 0.956 45 H 0.030 0.970 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 16.830 16.646 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.338 5.338 3 C 0.289 3.711 4 O -0.429 6.429 5 C 0.027 3.973 6 H 0.132 0.868 7 C -0.161 4.161 8 C -0.154 4.154 9 C -0.027 4.027 10 N -0.368 5.368 11 C 0.413 3.587 12 N -0.418 5.418 13 O -0.502 6.502 14 C 0.057 3.943 15 C -0.164 4.164 16 C -0.148 4.148 17 C 0.069 3.931 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.083 0.917 21 C -0.263 4.263 22 N -0.615 5.615 23 Si 0.794 3.206 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.203 1.203 27 C -0.177 4.177 28 C -0.147 4.147 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.241 0.759 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.619 15.988 16.891 23.314 hybrid contribution 0.684 -0.122 -1.274 1.452 sum 2.303 15.866 15.617 22.381 Atomic orbital electron populations 1.22457 0.78336 1.05226 1.02322 1.47817 1.07747 1.04908 1.73292 1.20941 0.87965 0.86165 0.75981 1.90655 1.15684 1.87393 1.49189 1.21879 0.91767 0.84260 0.99395 0.86777 1.22767 1.02581 0.98770 0.91933 1.22652 0.98944 0.92816 1.01010 1.22319 0.98810 0.87335 0.94257 1.47402 1.34463 1.13337 1.41550 1.15702 0.79253 0.83890 0.79815 1.42715 1.38423 1.12742 1.47967 1.90968 1.72652 1.31492 1.55096 1.20862 0.93242 0.83569 0.96637 1.21817 0.98181 1.01569 0.94802 1.21877 0.97679 0.99856 0.95373 1.20372 0.91443 0.94770 0.86497 1.42541 1.20261 1.68715 1.05668 1.19529 1.00849 1.28044 0.88472 0.91727 1.25401 0.97261 1.02830 1.00835 1.69775 1.12361 1.50516 1.28847 0.85283 0.77546 0.77693 0.80117 1.21420 1.21990 1.20265 1.22333 0.98208 1.04161 0.92953 1.21751 0.97502 0.97094 0.98359 0.91723 0.88163 0.89508 0.87258 0.92859 0.88157 0.87522 0.91138 0.88310 0.75935 0.74928 0.92205 0.93042 0.91372 0.95917 0.93726 0.95202 0.79315 0.94050 0.91863 0.88751 0.89865 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 7.68 127.77 0.98 2.11 16 2 N -0.60 -16.66 2.25 -822.62 -1.85 -18.51 16 3 C 0.50 15.98 5.81 87.65 0.51 16.49 16 4 O -0.55 -22.77 11.82 19.98 0.24 -22.54 16 5 C 0.13 3.08 2.74 44.71 0.12 3.20 16 6 H 0.11 2.09 6.54 -2.38 -0.02 2.07 16 7 C -0.12 -2.26 6.26 31.99 0.20 -2.06 16 8 C -0.12 -1.23 6.95 31.78 0.22 -1.01 16 9 C 0.09 1.14 6.15 86.73 0.53 1.68 16 10 N -0.63 -13.94 3.14 -810.03 -2.55 -16.48 16 11 C 0.71 19.72 8.01 179.06 1.43 21.16 16 12 N -0.85 -14.41 8.83 -184.75 -1.63 -16.04 16 13 O -0.62 -24.15 14.56 19.03 0.28 -23.87 16 14 C 0.16 4.73 2.94 44.99 0.13 4.87 16 15 C -0.12 -4.36 5.23 30.59 0.16 -4.20 16 16 C -0.11 -4.24 5.34 30.60 0.16 -4.07 16 17 C 0.18 7.06 2.77 44.99 0.12 7.19 16 18 N -0.73 -36.52 5.12 -322.94 -1.65 -38.18 16 19 C -0.24 -13.30 9.93 84.04 0.83 -12.46 16 20 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.96 -57.85 13.06 21.65 0.28 -57.57 16 23 Si 0.96 46.57 29.55 68.60 2.03 48.60 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 C -0.14 -4.14 4.73 30.59 0.14 -4.00 16 28 C -0.11 -2.66 4.91 30.59 0.15 -2.51 16 29 H 0.06 1.35 6.47 -2.38 -0.02 1.33 16 30 H 0.10 1.69 4.95 -2.39 -0.01 1.68 16 31 H 0.09 1.23 6.27 -2.39 -0.01 1.21 16 32 H 0.11 1.72 7.76 -2.38 -0.02 1.70 16 33 H 0.05 1.33 8.05 -2.39 -0.02 1.31 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.41 3.93 7.81 -92.71 -0.72 3.21 16 39 H 0.42 6.34 8.93 -92.71 -0.83 5.51 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 2.07 6.11 -2.39 -0.01 2.05 16 42 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 1.79 7.60 -2.39 -0.02 1.77 16 45 H 0.03 1.26 8.08 -2.38 -0.02 1.24 16 46 H 0.37 19.53 7.80 -92.71 -0.72 18.81 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.09 2.61 3.66 -2.39 -0.01 2.60 16 50 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.10 1.82 6.89 -2.38 -0.02 1.80 16 Total: -1.00 -84.92 380.96 0.02 -84.90 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -1.30 Total: 36.91 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 6.18 Total: 22.79 kcal Atomic # 7 Polarization: -139.39 SS G_CDS: -7.40 Total: -146.79 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: 0.51 Total: -46.41 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -84.92 0.02 -84.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964478669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.176 kcal (2) G-P(sol) polarization free energy of solvation -84.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds