Wall clock time and date at job start Tue Mar 31 2020 21:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.48238 * 125.78571 * 0.30240 * 9 7 2 11 11 C 1.52330 * 105.86751 * 176.82002 * 10 9 7 12 12 H 1.09000 * 109.88478 * 271.83269 * 11 10 9 13 13 C 1.51442 * 117.44384 * 145.30130 * 11 10 9 14 14 C 1.53846 * 107.03697 * 181.23668 * 13 11 10 15 15 C 1.52519 * 111.66462 * 57.19915 * 14 13 11 16 16 H 1.09004 * 109.03217 * 185.46299 * 15 14 13 17 17 N 1.46492 * 109.03749 * 66.53428 * 15 14 13 18 18 C 1.34774 * 120.00647 * 84.99671 * 17 15 14 19 19 O 1.21284 * 119.99611 * 0.02562 * 18 17 15 20 20 C 1.50692 * 120.00501 * 180.02562 * 18 17 15 21 21 F 1.39894 * 109.47258 * 55.00059 * 20 18 17 22 22 C 1.53001 * 109.47310 * 295.00008 * 20 18 17 23 23 C 1.52998 * 109.47291 * 179.97438 * 22 20 18 24 24 C 1.53004 * 109.47141 * 60.00113 * 23 22 20 25 25 C 1.53001 * 109.46936 * 300.00105 * 24 23 22 26 26 C 1.52998 * 109.47291 * 59.99987 * 25 24 23 27 27 C 1.53817 * 111.70119 * 305.95698 * 15 14 13 28 28 C 1.51617 * 107.02139 * 57.53804 * 27 15 14 29 29 H 1.09007 * 110.50523 * 55.18929 * 28 27 15 30 30 C 1.48660 * 125.78181 * 179.97438 * 9 7 2 31 31 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.16981 * 295.91860 * 10 9 7 33 33 H 1.09003 * 110.16854 * 57.71707 * 10 9 7 34 34 H 1.08995 * 109.94200 * 300.61670 * 13 11 10 35 35 H 1.09000 * 109.94057 * 61.85876 * 13 11 10 36 36 H 1.09000 * 109.04139 * 177.76289 * 14 13 11 37 37 H 1.09003 * 109.04167 * 296.63073 * 14 13 11 38 38 H 0.97005 * 120.00056 * 264.99974 * 17 15 14 39 39 H 1.08996 * 109.46833 * 300.00238 * 22 20 18 40 40 H 1.09003 * 109.46931 * 59.99926 * 22 20 18 41 41 H 1.08994 * 109.46969 * 299.99912 * 23 22 20 42 42 H 1.08997 * 109.46895 * 179.97438 * 23 22 20 43 43 H 1.08991 * 109.47006 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.46678 * 59.99944 * 24 23 22 45 45 H 1.08996 * 109.46833 * 299.99630 * 25 24 23 46 46 H 1.09003 * 109.46931 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.46895 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.47380 * 59.99513 * 26 25 24 49 49 H 1.09002 * 109.94056 * 176.91121 * 27 15 14 50 50 H 1.08996 * 109.94654 * 298.06868 * 27 15 14 51 51 H 1.09004 * 110.62476 * 274.10564 * 30 9 7 52 52 H 1.09000 * 110.63068 * 37.12463 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1492 -2.5375 0.0070 11 6 -0.4160 -4.0355 -0.0661 12 1 -0.4540 -4.3549 -1.1076 13 6 -1.6222 -4.5668 0.6797 14 6 -1.6452 -6.0910 0.4718 15 6 -0.3505 -6.7435 0.9451 16 1 -0.3726 -7.8031 0.6904 17 7 -0.2492 -6.6042 2.3999 18 6 -0.8503 -7.5013 3.2063 19 8 -1.4749 -8.4242 2.7275 20 6 -0.7466 -7.3577 4.7028 21 9 -1.1905 -6.0861 5.0811 22 6 0.7107 -7.5379 5.1327 23 6 0.8161 -7.3915 6.6520 24 6 -0.0505 -8.4557 7.3283 25 6 -1.5078 -8.2755 6.8984 26 6 -1.6132 -8.4220 5.3791 27 6 0.8835 -6.0979 0.2922 28 6 0.8447 -4.6211 0.6334 29 1 0.7866 -4.4800 1.7128 30 6 1.9355 -3.7438 0.0076 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5686 -2.1254 0.9249 33 1 -0.5779 -2.0365 -0.8609 34 1 -1.5331 -4.3379 1.7417 35 1 -2.5330 -4.1231 0.2778 36 1 -2.4810 -6.5134 1.0298 37 1 -1.7837 -6.3033 -0.5883 38 1 0.2506 -5.8663 2.7829 39 1 1.0565 -8.5286 4.8379 40 1 1.3279 -6.7794 4.6512 41 1 0.4704 -6.4006 6.9463 42 1 1.8542 -7.5203 6.9582 43 1 0.0250 -8.3517 8.4106 44 1 0.2953 -9.4466 7.0339 45 1 -1.8535 -7.2847 7.1928 46 1 -2.1250 -9.0340 7.3799 47 1 -2.6513 -8.2931 5.0729 48 1 -1.2673 -9.4128 5.0847 49 1 1.7930 -6.5476 0.6905 50 1 0.8453 -6.2322 -0.7888 51 1 2.1549 -4.0667 -1.0101 52 1 2.8376 -3.7588 0.6192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980211256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:15 Heat of formation + Delta-G solvation = -101.571075 kcal Electronic energy + Delta-G solvation = -31458.698792 eV Core-core repulsion = 27371.016349 eV Total energy + Delta-G solvation = -4087.682443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.00733 -41.59644 -40.22219 -38.33044 -37.12201 -34.83043 -33.55082 -32.34521 -31.80678 -31.52129 -30.36377 -27.86589 -26.90282 -24.99382 -23.78450 -23.55707 -22.13850 -21.90402 -21.43618 -20.63080 -20.21135 -18.94692 -18.75746 -17.44991 -17.15855 -16.82038 -16.36435 -16.14686 -16.02516 -15.65908 -15.62671 -15.37374 -14.95608 -14.71204 -14.48209 -14.42878 -14.40484 -13.70273 -13.65241 -13.62952 -13.39805 -13.28764 -13.18821 -13.01065 -12.88174 -12.78253 -12.66491 -12.47686 -12.43055 -12.09487 -12.01499 -11.90393 -11.76290 -11.68615 -11.50838 -11.42499 -11.08340 -10.99668 -10.81948 -10.69709 -10.68687 -10.08804 -8.87808 -7.82674 -5.17608 1.33538 1.45312 1.47265 1.55791 1.97814 2.50121 3.22261 3.35381 3.38115 3.48654 3.55086 3.62736 3.64650 3.73047 3.82538 4.09729 4.12057 4.13937 4.24287 4.33508 4.35632 4.42804 4.45887 4.46176 4.58308 4.60230 4.68662 4.73403 4.81279 4.85566 4.89978 4.95818 5.00163 5.02339 5.07883 5.10454 5.14051 5.14946 5.15768 5.24391 5.27723 5.30062 5.35315 5.47926 5.48561 5.50704 5.55433 5.75058 5.81757 6.19098 6.35664 6.99663 7.10086 7.77826 8.45030 9.27799 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002977 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.271227 B = 9402.599059 C =10283.081699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.238 4.238 8 H 0.083 0.917 9 N -0.633 5.633 10 C 0.199 3.801 11 C -0.105 4.105 12 H 0.072 0.928 13 C -0.092 4.092 14 C -0.118 4.118 15 C 0.151 3.849 16 H 0.094 0.906 17 N -0.705 5.705 18 C 0.500 3.500 19 O -0.556 6.556 20 C 0.106 3.894 21 F -0.203 7.203 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.098 4.098 28 C -0.090 4.090 29 H 0.067 0.933 30 C 0.137 3.863 31 H 0.244 0.756 32 H -0.001 1.001 33 H 0.006 0.994 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.032 0.968 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -21.418 11.506 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.360 5.360 10 C 0.074 3.926 11 C -0.125 4.125 12 H 0.091 0.909 13 C -0.130 4.130 14 C -0.156 4.156 15 C 0.048 3.952 16 H 0.112 0.888 17 N -0.357 5.357 18 C 0.284 3.716 19 O -0.435 6.435 20 C 0.085 3.915 21 F -0.184 7.184 22 C -0.173 4.173 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.136 4.136 28 C -0.109 4.109 29 H 0.085 0.915 30 C 0.013 3.987 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.244 0.756 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.109 0.891 50 H 0.113 0.887 51 H 0.050 0.950 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.138 -21.826 11.154 24.511 hybrid contribution 0.076 2.186 -0.109 2.190 sum 0.214 -19.641 11.045 22.534 Atomic orbital electron populations 1.70201 1.06326 1.25010 1.58677 1.25640 0.96574 1.00999 1.03090 0.85102 0.77705 0.79296 0.77396 1.21429 1.22348 1.19191 1.19491 0.91010 0.83870 1.42340 0.89891 1.45448 1.02179 1.01148 1.87207 1.20507 0.83637 0.91477 0.96991 1.21967 0.95949 0.95100 0.99439 0.90944 1.21152 0.97192 0.95426 0.99259 1.21852 0.97275 0.94080 1.02391 1.21108 0.94896 1.00675 0.78557 0.88798 1.46287 1.53156 1.28900 1.07316 1.21128 0.78638 0.82204 0.89618 1.90688 1.42009 1.33768 1.77031 1.21361 0.98951 0.80980 0.90250 1.92889 1.91156 1.42093 1.92239 1.22173 0.91288 1.04900 0.98985 1.21537 1.01651 0.99890 0.92629 1.21594 0.93818 0.99363 1.00944 1.21565 0.98261 1.02677 0.93215 1.21891 0.99277 0.98066 0.96628 1.21603 0.97173 0.92628 1.02217 1.21975 0.95149 0.94835 0.98954 0.91477 1.21558 0.95202 0.84279 0.97642 0.94666 0.98266 0.97532 0.93234 0.92410 0.92637 0.89639 0.75628 0.88349 0.89969 0.92189 0.89366 0.90331 0.90665 0.92289 0.89719 0.91773 0.88915 0.89119 0.88747 0.95048 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.60 10.36 21.65 0.22 -58.38 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.37 29.55 68.60 2.03 48.39 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.24 -13.41 10.30 84.03 0.87 -12.55 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -32.42 3.45 -692.54 -2.39 -34.81 16 10 C 0.20 9.90 5.06 85.82 0.43 10.33 16 11 C -0.11 -3.75 2.29 -10.62 -0.02 -3.77 16 12 H 0.07 2.48 7.95 -2.39 -0.02 2.46 16 13 C -0.09 -2.87 5.57 30.37 0.17 -2.70 16 14 C -0.12 -2.95 5.42 30.72 0.17 -2.78 16 15 C 0.15 3.39 2.70 45.11 0.12 3.51 16 16 H 0.09 2.06 7.52 -2.39 -0.02 2.04 16 17 N -0.71 -16.07 4.62 -442.00 -2.04 -18.11 16 18 C 0.50 12.20 6.76 87.65 0.59 12.79 16 19 O -0.56 -16.41 15.62 -3.04 -0.05 -16.45 16 20 C 0.11 2.18 1.05 -11.54 -0.01 2.17 16 21 F -0.20 -5.10 15.75 44.97 0.71 -4.39 16 22 C -0.14 -2.07 4.95 30.59 0.15 -1.92 16 23 C -0.12 -1.57 5.80 30.60 0.18 -1.39 16 24 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 25 C -0.12 -1.71 5.80 30.59 0.18 -1.54 16 26 C -0.12 -2.23 4.30 30.60 0.13 -2.09 16 27 C -0.10 -2.12 5.38 30.42 0.16 -1.95 16 28 C -0.09 -2.74 2.43 -10.23 -0.02 -2.77 16 29 H 0.07 2.12 6.21 -2.38 -0.01 2.11 16 30 C 0.14 5.27 6.90 86.07 0.59 5.86 16 31 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.00 -0.05 7.59 -2.39 -0.02 -0.07 16 33 H 0.01 0.37 7.31 -2.39 -0.02 0.35 16 34 H 0.05 1.65 7.90 -2.39 -0.02 1.63 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.41 9.08 6.59 -92.70 -0.61 8.47 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 41 H 0.06 0.95 7.80 -2.39 -0.02 0.93 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 50 H 0.09 1.88 8.00 -2.39 -0.02 1.86 16 51 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 52 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -70.58 391.28 3.10 -67.49 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.28 Total: 19.84 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.33 Total: -3.58 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.21 Total: -111.29 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.45 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.71 Total: -4.39 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -70.58 3.10 -67.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.085 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds