Wall clock time and date at job start Tue Mar 31 2020 21:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46981 * 239.99905 * 3 2 1 5 5 H 1.48500 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47283 * 119.99738 * 3 2 1 7 7 C 1.38810 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00242 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.48237 * 125.78352 * 0.02562 * 9 7 2 11 11 C 1.52323 * 105.86744 * 176.81349 * 10 9 7 12 12 H 1.08998 * 110.24508 * 272.17535 * 11 10 9 13 13 C 1.51442 * 117.45648 * 145.31334 * 11 10 9 14 14 C 1.53836 * 107.04416 * 181.22862 * 13 11 10 15 15 C 1.52534 * 111.65854 * 57.19977 * 14 13 11 16 16 H 1.09005 * 109.03035 * 66.45517 * 15 14 13 17 17 N 1.46504 * 109.03154 * 185.37779 * 15 14 13 18 18 C 1.34770 * 120.00094 * 276.06416 * 17 15 14 19 19 O 1.21281 * 120.00244 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99761 * 180.02562 * 18 17 15 21 21 F 1.39905 * 109.46955 * 60.00202 * 20 18 17 22 22 C 1.52999 * 109.47466 * 300.00109 * 20 18 17 23 23 C 1.52997 * 109.47317 * 180.02562 * 22 20 18 24 24 C 1.53000 * 109.47060 * 59.99960 * 23 22 20 25 25 C 1.53002 * 109.47233 * 299.99657 * 24 23 22 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 24 23 27 27 C 1.53810 * 111.64319 * 305.91722 * 15 14 13 28 28 C 1.51603 * 107.02844 * 57.64654 * 27 15 14 29 29 H 1.08998 * 111.31841 * 55.52333 * 28 27 15 30 30 C 1.48661 * 125.78320 * 180.02562 * 9 7 2 31 31 H 0.97004 * 119.99779 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.17687 * 57.71120 * 10 9 7 33 33 H 1.09005 * 110.16868 * 295.91163 * 10 9 7 34 34 H 1.08999 * 109.93823 * 61.84652 * 13 11 10 35 35 H 1.09002 * 109.93679 * 300.61340 * 13 11 10 36 36 H 1.08998 * 109.04502 * 296.64121 * 14 13 11 37 37 H 1.09002 * 109.04069 * 177.75785 * 14 13 11 38 38 H 0.97006 * 119.99455 * 96.06596 * 17 15 14 39 39 H 1.08996 * 109.46929 * 59.99194 * 22 20 18 40 40 H 1.09002 * 109.46716 * 299.99999 * 22 20 18 41 41 H 1.09002 * 109.47153 * 299.99641 * 23 22 20 42 42 H 1.09001 * 109.46832 * 179.97438 * 23 22 20 43 43 H 1.08992 * 109.47399 * 59.99823 * 24 23 22 44 44 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 45 45 H 1.08993 * 109.47662 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47075 * 300.00932 * 25 24 23 47 47 H 1.09002 * 109.47153 * 60.00231 * 26 25 24 48 48 H 1.09001 * 109.47289 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.93901 * 176.95706 * 27 15 14 50 50 H 1.08996 * 109.94472 * 298.19330 * 27 15 14 51 51 H 1.08995 * 110.62411 * 37.13050 * 30 9 7 52 52 H 1.09008 * 110.62304 * 274.11191 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1493 -2.5375 -0.0005 11 6 -0.4162 -4.0350 -0.0815 12 1 -0.4490 -4.3565 -1.1225 13 6 -1.6227 -4.5703 0.6608 14 6 -1.6458 -6.0933 0.4449 15 6 -0.3511 -6.7483 0.9155 16 1 -0.2758 -6.6490 1.9984 17 7 -0.3816 -8.1710 0.5674 18 6 -1.0002 -9.0505 1.3799 19 8 -1.5315 -8.6642 2.3994 20 6 -1.0310 -10.5141 1.0221 21 9 0.2780 -10.9998 0.9324 22 6 -1.7356 -10.6954 -0.3239 23 6 -1.7674 -12.1814 -0.6868 24 6 -2.5258 -12.9543 0.3941 25 6 -1.8211 -12.7731 1.7400 26 6 -1.7894 -11.2871 2.1030 27 6 0.8822 -6.0989 0.2651 28 6 0.8442 -4.6244 0.6155 29 1 0.7933 -4.4745 1.6939 30 6 1.9353 -3.7439 0.0016 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5778 -2.0320 -0.8660 33 1 -0.5690 -2.1301 0.9193 34 1 -2.5333 -4.1244 0.2608 35 1 -1.5342 -4.3469 1.7240 36 1 -1.7835 -6.3000 -0.6164 37 1 -2.4818 -6.5186 1.0002 38 1 0.0437 -8.4800 -0.2479 39 1 -1.1956 -10.1443 -1.0938 40 1 -2.7554 -10.3170 -0.2540 41 1 -0.7477 -12.5603 -0.7566 42 1 -2.2697 -12.3106 -1.6455 43 1 -3.5454 -12.5755 0.4639 44 1 -2.5480 -14.0130 0.1357 45 1 -2.3611 -13.3240 2.5100 46 1 -0.8014 -13.1518 1.6702 47 1 -2.8090 -10.9082 2.1728 48 1 -1.2870 -11.1579 3.0616 49 1 1.7920 -6.5506 0.6604 50 1 0.8425 -6.2262 -0.8166 51 1 2.8340 -3.7602 0.6181 52 1 2.1603 -4.0645 -1.0157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980211259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:20 Heat of formation + Delta-G solvation = -105.218874 kcal Electronic energy + Delta-G solvation = -30647.949908 eV Core-core repulsion = 26560.109285 eV Total energy + Delta-G solvation = -4087.840623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.00044 -41.43868 -40.32298 -38.34251 -37.14401 -35.12915 -33.59613 -32.36824 -31.79028 -31.57475 -30.24930 -27.83546 -26.85868 -24.86360 -23.76468 -23.55773 -22.19304 -21.71552 -21.31159 -20.87274 -20.58267 -18.93485 -18.71597 -17.56975 -17.05219 -16.84934 -16.37639 -16.00608 -15.86540 -15.82734 -15.64686 -15.56324 -15.08391 -14.84689 -14.44371 -14.42140 -14.12395 -13.76955 -13.62694 -13.55231 -13.37223 -13.32974 -13.22006 -13.10514 -12.93042 -12.81074 -12.72717 -12.60710 -12.16073 -12.08317 -11.98198 -11.80192 -11.76391 -11.68775 -11.49326 -11.45351 -11.24702 -11.05529 -10.87449 -10.69765 -10.65378 -10.13824 -8.89029 -7.83455 -5.18668 1.31802 1.44592 1.48284 1.54419 1.88376 2.49735 3.18963 3.34172 3.37480 3.48975 3.51451 3.63323 3.65949 3.69234 3.90839 4.09696 4.11801 4.14524 4.25786 4.35225 4.36409 4.41979 4.44684 4.47009 4.52108 4.61192 4.65529 4.70523 4.78253 4.83601 4.92548 4.97532 5.02670 5.03623 5.04890 5.10564 5.15044 5.16216 5.17725 5.24513 5.30070 5.31080 5.33479 5.43355 5.47154 5.50690 5.54619 5.75099 5.81393 6.18608 6.36855 7.02372 7.09402 7.76518 8.43872 9.26965 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.002126 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.465679 B =13168.339062 C =13356.587438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.635 5.635 10 C 0.197 3.803 11 C -0.105 4.105 12 H 0.077 0.923 13 C -0.093 4.093 14 C -0.111 4.111 15 C 0.153 3.847 16 H 0.064 0.936 17 N -0.701 5.701 18 C 0.496 3.504 19 O -0.561 6.561 20 C 0.114 3.886 21 F -0.197 7.197 22 C -0.137 4.137 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.094 4.094 28 C -0.090 4.090 29 H 0.061 0.939 30 C 0.138 3.862 31 H 0.245 0.755 32 H 0.012 0.988 33 H -0.001 1.001 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.041 0.959 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 -29.417 -2.506 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.073 3.927 11 C -0.124 4.124 12 H 0.096 0.904 13 C -0.131 4.131 14 C -0.150 4.150 15 C 0.049 3.951 16 H 0.082 0.918 17 N -0.352 5.352 18 C 0.280 3.720 19 O -0.439 6.439 20 C 0.093 3.907 21 F -0.177 7.177 22 C -0.175 4.175 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.156 4.156 26 C -0.163 4.163 27 C -0.132 4.132 28 C -0.110 4.110 29 H 0.079 0.921 30 C 0.014 3.986 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.017 0.983 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.110 0.890 51 H 0.060 0.940 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.342 -28.941 -1.791 29.485 hybrid contribution 0.654 1.592 0.050 1.722 sum -4.688 -27.349 -1.741 27.802 Atomic orbital electron populations 1.70194 1.06282 1.25193 1.58525 1.25672 0.96664 1.01060 1.03001 0.85147 0.77109 0.78821 0.78235 1.20142 1.22141 1.20425 1.19449 0.90988 0.83884 1.42614 0.90023 1.45473 1.02361 1.01102 1.87278 1.20529 0.83479 0.91520 0.97190 1.21998 0.95720 0.95039 0.99618 0.90448 1.21152 0.97479 0.94953 0.99527 1.21770 0.96877 0.93966 1.02364 1.20946 0.95343 0.79065 0.99794 0.91775 1.46030 1.55688 1.07254 1.26217 1.21309 0.78312 0.89097 0.83270 1.90727 1.46132 1.80474 1.26566 1.21232 0.79936 0.88810 1.00721 1.92885 1.38408 1.88908 1.97534 1.22204 1.02026 1.00171 0.93057 1.21529 1.01733 0.92507 0.99707 1.21616 0.99395 1.01237 0.93785 1.21552 1.01788 0.93616 0.98602 1.21914 1.01196 0.96520 0.96698 1.21466 0.96902 0.92761 1.02060 1.21845 0.95676 0.94365 0.99124 0.92090 1.21486 0.95017 0.84374 0.97714 0.94535 0.96995 0.98282 0.91360 0.93114 0.90087 0.92215 0.74659 0.88940 0.89042 0.91413 0.89352 0.91230 0.90244 0.90142 0.91705 0.89598 0.91822 0.89932 0.89025 0.94040 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 10.36 21.65 0.22 -58.62 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 3 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.79 10.30 84.03 0.87 -12.92 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.64 -33.34 3.45 -693.08 -2.39 -35.73 16 10 C 0.20 9.92 5.07 85.82 0.43 10.36 16 11 C -0.10 -3.75 2.31 -10.62 -0.02 -3.77 16 12 H 0.08 2.58 7.91 -2.39 -0.02 2.56 16 13 C -0.09 -2.83 5.71 30.37 0.17 -2.66 16 14 C -0.11 -2.68 5.35 30.72 0.16 -2.52 16 15 C 0.15 3.57 2.44 45.11 0.11 3.68 16 16 H 0.06 1.84 7.55 -2.38 -0.02 1.83 16 17 N -0.70 -13.14 4.94 -441.96 -2.18 -15.32 16 18 C 0.50 11.00 6.81 87.66 0.60 11.59 16 19 O -0.56 -16.95 15.63 -3.03 -0.05 -17.00 16 20 C 0.11 1.90 1.06 -11.54 -0.01 1.89 16 21 F -0.20 -3.64 15.76 44.97 0.71 -2.93 16 22 C -0.14 -1.48 4.89 30.59 0.15 -1.33 16 23 C -0.12 -1.00 5.80 30.59 0.18 -0.83 16 24 C -0.12 -1.05 5.92 30.60 0.18 -0.87 16 25 C -0.12 -1.36 5.80 30.59 0.18 -1.19 16 26 C -0.13 -2.05 4.29 30.60 0.13 -1.92 16 27 C -0.09 -2.15 5.15 30.41 0.16 -1.99 16 28 C -0.09 -2.97 2.49 -10.33 -0.03 -3.00 16 29 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 30 C 0.14 5.54 6.90 85.98 0.59 6.14 16 31 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.01 0.67 7.30 -2.39 -0.02 0.65 16 33 H 0.00 -0.06 7.60 -2.38 -0.02 -0.08 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.42 5.41 8.02 -92.70 -0.74 4.66 16 39 H 0.09 0.77 7.56 -2.39 -0.02 0.75 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.66 7.80 -2.39 -0.02 0.64 16 42 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.82 7.80 -2.39 -0.02 0.80 16 47 H 0.09 1.43 8.10 -2.39 -0.02 1.41 16 48 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 49 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.09 1.78 7.98 -2.39 -0.02 1.76 16 51 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -72.65 394.30 2.80 -69.85 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.15 Total: 13.99 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.32 Total: -3.04 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.35 Total: -109.67 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.71 Total: -2.93 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -72.65 2.80 -69.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.365 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds