Wall clock time and date at job start Tue Mar 31 2020 21:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86792 * 120.00126 * 2 1 4 4 H 1.48505 * 109.47001 * 274.98570 * 3 2 1 5 5 H 1.48506 * 109.47046 * 34.98361 * 3 2 1 6 6 H 1.48491 * 109.47347 * 154.98321 * 3 2 1 7 7 C 1.38813 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99810 * 186.86371 * 7 2 1 9 9 N 1.36944 * 120.00210 * 6.86796 * 7 2 1 10 10 C 1.47225 * 125.73567 * 354.09948 * 9 7 2 11 11 C 1.53379 * 106.53211 * 180.66284 * 10 9 7 12 12 H 1.09006 * 108.94995 * 268.93962 * 11 10 9 13 13 C 1.50892 * 113.07276 * 147.53593 * 11 10 9 14 14 C 1.52834 * 111.56626 * 294.17370 * 13 11 10 15 15 C 1.53299 * 108.21877 * 300.95242 * 14 13 11 16 16 H 1.08999 * 109.79323 * 303.98115 * 15 14 13 17 17 N 1.46508 * 109.63085 * 183.48943 * 15 14 13 18 18 C 1.34774 * 119.99997 * 85.98211 * 17 15 14 19 19 O 1.21287 * 119.99914 * 0.02562 * 18 17 15 20 20 C 1.50692 * 120.00053 * 179.97438 * 18 17 15 21 21 F 1.39905 * 109.47186 * 55.00173 * 20 18 17 22 22 C 1.53007 * 109.47562 * 295.00160 * 20 18 17 23 23 C 1.52995 * 109.47295 * 179.97438 * 22 20 18 24 24 C 1.52998 * 109.47003 * 60.00146 * 23 22 20 25 25 C 1.52998 * 109.47279 * 299.99732 * 24 23 22 26 26 C 1.52996 * 109.47393 * 175.00339 * 20 18 17 27 27 C 1.52627 * 108.50915 * 63.78478 * 15 14 13 28 28 C 1.52991 * 110.88820 * 297.82041 * 27 15 14 29 29 H 1.08999 * 112.43024 * 286.59231 * 28 27 15 30 30 C 1.47618 * 125.72771 * 174.05931 * 9 7 2 31 31 H 0.96992 * 119.99796 * 359.97438 * 1 2 3 32 32 H 1.09007 * 110.03490 * 61.39499 * 10 9 7 33 33 H 1.09003 * 110.04713 * 299.93543 * 10 9 7 34 34 H 1.09001 * 109.05894 * 173.64257 * 13 11 10 35 35 H 1.08998 * 109.06634 * 54.71698 * 13 11 10 36 36 H 1.09003 * 109.71902 * 181.27075 * 14 13 11 37 37 H 1.09003 * 109.71309 * 60.63182 * 14 13 11 38 38 H 0.96997 * 119.99780 * 265.98272 * 17 15 14 39 39 H 1.08994 * 109.46616 * 300.00238 * 22 20 18 40 40 H 1.09006 * 109.46468 * 59.99739 * 22 20 18 41 41 H 1.08997 * 109.47465 * 300.00318 * 23 22 20 42 42 H 1.09002 * 109.46900 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.47000 * 179.97438 * 24 23 22 44 44 H 1.09006 * 109.47022 * 59.99740 * 24 23 22 45 45 H 1.08997 * 109.47231 * 299.99854 * 25 24 23 46 46 H 1.08999 * 109.46831 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.46748 * 299.99991 * 26 20 18 48 48 H 1.08994 * 109.47460 * 60.00249 * 26 20 18 49 49 H 1.08996 * 109.18733 * 58.16977 * 27 15 14 50 50 H 1.09002 * 109.18422 * 177.47170 * 27 15 14 51 51 H 1.09002 * 110.43165 * 36.36728 * 30 9 7 52 52 H 1.09000 * 110.54281 * 273.91558 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1123 9 7 1.3329 -2.3840 -0.1408 10 6 -0.1309 -2.5368 -0.1788 11 6 -0.4091 -4.0373 -0.3327 12 1 -0.4761 -4.2779 -1.3938 13 6 -1.6797 -4.4764 0.3526 14 6 -1.5793 -4.3284 1.8704 15 6 -0.4032 -5.1819 2.3585 16 1 -0.5375 -6.2143 2.0360 17 7 -0.3297 -5.1286 3.8208 18 6 -1.0623 -5.9815 4.5638 19 8 -1.7821 -6.7936 4.0219 20 6 -0.9864 -5.9271 6.0678 21 9 -1.2790 -4.6300 6.5029 22 6 0.4234 -6.3114 6.5217 23 6 0.5006 -6.2555 8.0486 24 6 -0.5121 -7.2341 8.6466 25 6 -1.9218 -6.8498 8.1929 26 6 -1.9990 -6.9061 6.6654 27 6 0.8838 -4.6210 1.7597 28 6 0.8572 -4.7059 0.2324 29 1 0.9900 -5.7253 -0.1298 30 6 1.9480 -3.7185 -0.2813 31 1 -0.4849 0.8400 0.0004 32 1 -0.5413 -1.9915 -1.0288 33 1 -0.5692 -2.1687 0.7488 34 1 -1.8728 -5.5211 0.1089 35 1 -2.5084 -3.8685 -0.0103 36 1 -2.5025 -4.6742 2.3356 37 1 -1.4067 -3.2832 2.1273 38 1 0.2462 -4.4794 4.2541 39 1 0.6513 -7.3219 6.1826 40 1 1.1448 -5.6139 6.0959 41 1 0.2728 -5.2448 8.3872 42 1 1.5048 -6.5297 8.3719 43 1 -0.4568 -7.1946 9.7345 44 1 -0.2843 -8.2449 8.3080 45 1 -2.1497 -5.8392 8.5315 46 1 -2.6432 -7.5473 8.6186 47 1 -3.0033 -6.6323 6.3422 48 1 -1.7710 -7.9166 6.3265 49 1 0.9934 -3.5785 2.0587 50 1 1.7325 -5.1924 2.1356 51 1 2.8458 -3.7903 0.3326 52 1 2.1846 -3.9226 -1.3255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980211261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:23 Heat of formation + Delta-G solvation = -106.140115 kcal Electronic energy + Delta-G solvation = -31324.250738 eV Core-core repulsion = 27236.370167 eV Total energy + Delta-G solvation = -4087.880571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.02290 -41.45011 -40.36452 -38.33727 -36.92028 -35.07602 -33.64662 -32.31907 -31.80534 -31.45509 -30.30557 -27.74203 -26.81951 -25.05584 -23.82959 -23.66442 -22.65979 -21.94350 -21.23386 -20.65311 -19.77242 -18.88626 -18.60658 -17.56771 -17.16185 -16.82254 -16.50528 -16.33938 -15.88006 -15.74385 -15.67000 -15.49906 -14.92609 -14.83587 -14.46035 -14.43765 -13.96528 -13.85545 -13.74392 -13.54749 -13.39769 -13.26686 -13.17791 -12.94953 -12.85486 -12.80732 -12.68618 -12.65855 -12.18300 -12.12540 -12.09012 -11.77129 -11.71721 -11.66496 -11.50587 -11.26699 -11.16412 -11.06619 -11.02126 -10.66665 -10.59957 -10.09810 -8.82258 -7.83188 -5.15978 1.30994 1.45141 1.46790 1.55293 1.92292 2.50670 3.19316 3.35276 3.36674 3.48448 3.57859 3.62396 3.76421 3.83758 3.97040 4.09764 4.13157 4.17269 4.22929 4.27034 4.32040 4.35179 4.45630 4.52584 4.56460 4.58742 4.60364 4.70165 4.81268 4.86089 4.95632 4.97754 5.01837 5.03444 5.07110 5.13924 5.14400 5.15207 5.23852 5.26858 5.27895 5.30028 5.34630 5.47532 5.50187 5.53395 5.62120 5.75068 5.88142 6.23287 6.35637 6.98058 7.13372 7.82075 8.48224 9.27448 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.002941 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.637418 B = 9516.728778 C =10351.810867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.198 3.802 11 C -0.103 4.103 12 H 0.066 0.934 13 C -0.090 4.090 14 C -0.120 4.120 15 C 0.157 3.843 16 H 0.092 0.908 17 N -0.706 5.706 18 C 0.498 3.502 19 O -0.557 6.557 20 C 0.109 3.891 21 F -0.202 7.202 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.104 4.104 28 C -0.079 4.079 29 H 0.116 0.884 30 C 0.131 3.869 31 H 0.244 0.756 32 H -0.004 1.004 33 H 0.014 0.986 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.409 0.591 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.091 0.909 49 H 0.050 0.950 50 H 0.082 0.918 51 H 0.048 0.952 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -18.090 15.415 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.073 3.927 11 C -0.122 4.122 12 H 0.084 0.916 13 C -0.128 4.128 14 C -0.159 4.159 15 C 0.053 3.947 16 H 0.110 0.890 17 N -0.356 5.356 18 C 0.283 3.717 19 O -0.435 6.435 20 C 0.088 3.912 21 F -0.182 7.182 22 C -0.173 4.173 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.160 4.160 27 C -0.142 4.142 28 C -0.098 4.098 29 H 0.134 0.866 30 C 0.006 3.994 31 H 0.053 0.947 32 H 0.014 0.986 33 H 0.032 0.968 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.244 0.756 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.110 0.890 49 H 0.069 0.931 50 H 0.100 0.900 51 H 0.066 0.934 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.444 -18.412 15.043 23.780 hybrid contribution 0.227 2.209 -0.301 2.241 sum -0.217 -16.203 14.742 21.907 Atomic orbital electron populations 1.70208 1.06252 1.24935 1.58372 1.25598 0.96478 1.00793 1.03048 0.85155 0.78005 0.79729 0.77067 1.21837 1.22467 1.19058 1.19424 0.91518 0.83907 1.41589 0.90056 1.44814 1.02363 1.02190 1.85621 1.20710 0.83774 0.90977 0.97210 1.21530 0.95208 0.95767 0.99742 0.91597 1.20779 0.96524 1.01788 0.93717 1.21830 0.98071 0.99374 0.96585 1.20905 0.95390 1.00141 0.78276 0.88969 1.46134 1.45520 1.36548 1.07383 1.21245 0.79455 0.80821 0.90198 1.90691 1.39916 1.38890 1.73994 1.21334 1.00534 0.80225 0.89123 1.92885 1.94995 1.39807 1.90553 1.22181 0.91904 1.04247 0.99017 1.21535 1.01007 1.00528 0.92491 1.21602 0.93413 0.99483 1.01286 1.21571 0.98725 1.02521 0.92813 1.21913 0.97662 0.99133 0.97290 1.21590 0.96245 1.01140 0.95267 1.22268 0.94438 0.98817 0.94287 0.86625 1.22032 0.95358 0.84634 0.97413 0.94711 0.98573 0.96782 0.89885 0.92575 0.92577 0.93675 0.75567 0.88534 0.89799 0.91924 0.89261 0.90170 0.90789 0.92106 0.89732 0.91841 0.89002 0.93073 0.89956 0.93412 0.96020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.63 10.39 21.65 0.22 -57.40 16 2 C -0.07 -3.78 5.48 84.86 0.47 -3.31 16 3 Si 0.97 46.06 29.56 68.60 2.03 48.09 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.24 -13.03 10.27 84.03 0.86 -12.17 16 8 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 9 N -0.62 -31.26 2.92 -690.93 -2.02 -33.28 16 10 C 0.20 9.69 4.35 86.37 0.38 10.07 16 11 C -0.10 -3.70 2.69 -11.03 -0.03 -3.73 16 12 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 13 C -0.09 -2.83 5.35 29.85 0.16 -2.68 16 14 C -0.12 -3.93 5.42 30.64 0.17 -3.76 16 15 C 0.16 4.44 2.44 44.97 0.11 4.55 16 16 H 0.09 2.57 7.57 -2.39 -0.02 2.55 16 17 N -0.71 -18.28 5.05 -442.64 -2.23 -20.51 16 18 C 0.50 13.20 6.80 87.65 0.60 13.79 16 19 O -0.56 -17.85 15.64 -3.05 -0.05 -17.90 16 20 C 0.11 2.30 1.05 -11.54 -0.01 2.29 16 21 F -0.20 -4.99 15.75 44.97 0.71 -4.28 16 22 C -0.14 -2.06 4.95 30.59 0.15 -1.91 16 23 C -0.12 -1.46 5.80 30.59 0.18 -1.28 16 24 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 25 C -0.12 -1.68 5.80 30.61 0.18 -1.50 16 26 C -0.12 -2.31 4.30 30.61 0.13 -2.18 16 27 C -0.10 -3.09 4.29 30.47 0.13 -2.96 16 28 C -0.08 -2.43 3.72 -9.49 -0.04 -2.47 16 29 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 30 C 0.13 5.04 6.49 87.15 0.57 5.61 16 31 H 0.24 14.53 8.31 -92.71 -0.77 13.75 16 32 H 0.00 -0.23 7.38 -2.38 -0.02 -0.24 16 33 H 0.01 0.77 5.93 -2.39 -0.01 0.75 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.75 6.75 -2.39 -0.02 1.74 16 38 H 0.41 9.65 8.39 -92.71 -0.78 8.87 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.22 7.93 -2.38 -0.02 1.20 16 41 H 0.06 0.91 7.80 -2.39 -0.02 0.89 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 0.97 7.80 -2.39 -0.02 0.95 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.09 1.66 8.04 -2.39 -0.02 1.64 16 49 H 0.05 1.91 7.17 -2.39 -0.02 1.90 16 50 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 52 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -69.26 390.50 2.95 -66.31 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.12 Total: 21.75 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.17 Total: -2.78 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.03 Total: -111.19 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.05 Total: -17.90 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.71 Total: -4.28 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.26 2.95 -66.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.833 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds