Wall clock time and date at job start Tue Mar 31 2020 21:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.54312 * 112.07334 * 2 1 4 4 N 1.50804 * 103.42321 * 213.42611 * 3 2 1 5 5 C 1.36933 * 127.62950 * 219.61916 * 4 3 2 6 6 H 1.08001 * 119.99778 * 165.13836 * 5 4 3 7 7 C 1.38817 * 120.00052 * 345.14579 * 5 4 3 8 8 N 1.31620 * 119.99977 * 350.85142 * 7 5 4 9 9 Si 1.86800 * 119.99756 * 170.85361 * 7 5 4 10 10 H 1.48500 * 109.47199 * 60.00088 * 9 7 5 11 11 H 1.48502 * 109.46734 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47144 * 299.99711 * 9 7 5 13 13 C 1.48108 * 104.52339 * 39.79441 * 4 3 2 14 14 C 1.54312 * 104.71508 * 320.06951 * 13 4 3 15 15 C 1.53005 * 112.07544 * 145.86547 * 14 13 4 16 16 C 1.54086 * 108.89843 * 271.75755 * 14 13 4 17 17 N 1.47203 * 106.24041 * 131.02786 * 16 14 13 18 18 C 1.34774 * 126.70556 * 148.58254 * 17 16 14 19 19 O 1.21288 * 119.99908 * 4.68618 * 18 17 16 20 20 C 1.50692 * 120.00359 * 184.68416 * 18 17 16 21 21 F 1.39903 * 109.47186 * 50.60480 * 20 18 17 22 22 C 1.52999 * 109.47280 * 290.60767 * 20 18 17 23 23 C 1.52998 * 109.47334 * 179.97438 * 22 20 18 24 24 C 1.53005 * 109.47184 * 60.00053 * 23 22 20 25 25 C 1.52999 * 109.46942 * 300.00187 * 24 23 22 26 26 C 1.52998 * 109.47334 * 59.99905 * 25 24 23 27 27 C 1.47207 * 106.59245 * 328.32445 * 17 16 14 28 28 H 1.09002 * 109.47295 * 297.98115 * 1 2 3 29 29 H 1.08999 * 109.47715 * 57.98570 * 1 2 3 30 30 H 1.09005 * 109.47070 * 177.98692 * 1 2 3 31 31 H 1.08995 * 110.39403 * 331.84705 * 3 2 1 32 32 H 1.09006 * 110.38446 * 94.23580 * 3 2 1 33 33 H 0.96997 * 119.99342 * 180.02562 * 8 7 5 34 34 H 1.09002 * 110.38401 * 201.25929 * 13 4 3 35 35 H 1.09002 * 110.38921 * 78.87956 * 13 4 3 36 36 H 1.08994 * 109.46992 * 302.40938 * 15 14 13 37 37 H 1.08996 * 109.47209 * 62.41445 * 15 14 13 38 38 H 1.08997 * 109.46958 * 182.41063 * 15 14 13 39 39 H 1.08996 * 110.22301 * 11.80199 * 16 14 13 40 40 H 1.09006 * 110.07541 * 250.16963 * 16 14 13 41 41 H 1.09003 * 109.46969 * 299.99849 * 22 20 18 42 42 H 1.08995 * 109.46880 * 59.99923 * 22 20 18 43 43 H 1.09003 * 109.47250 * 300.00021 * 23 22 20 44 44 H 1.08998 * 109.47088 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.47303 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.47053 * 59.99847 * 24 23 22 47 47 H 1.09003 * 109.46969 * 299.99711 * 25 24 23 48 48 H 1.09004 * 109.46729 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47088 * 180.02562 * 26 25 24 50 50 H 1.09003 * 109.47250 * 59.99979 * 26 25 24 51 51 H 1.08999 * 110.07072 * 150.83186 * 27 17 16 52 52 H 1.09006 * 110.06446 * 272.35982 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1099 1.4300 0.0000 4 7 3.3759 1.2944 -0.8080 5 6 4.5862 1.8898 -0.5720 6 1 5.4717 1.5316 -1.0760 7 6 4.6750 2.9538 0.3152 8 7 3.5797 3.5070 0.7911 9 14 6.3492 3.6004 0.8335 10 1 7.0913 4.0691 -0.3643 11 1 6.1718 4.7314 1.7793 12 1 7.1152 2.5150 1.4971 13 6 3.0144 0.3777 -1.9138 14 6 2.1155 -0.6917 -1.2584 15 6 1.0221 -1.1846 -2.2084 16 6 3.0047 -1.8285 -0.7187 17 7 2.5674 -2.0713 0.6658 18 6 2.5889 -3.2479 1.3227 19 8 3.0784 -4.2261 0.7988 20 6 2.0050 -3.3481 2.7083 21 9 0.7148 -2.8070 2.7109 22 6 2.8853 -2.5722 3.6901 23 6 2.2921 -2.6734 5.0968 24 6 2.2293 -4.1426 5.5194 25 6 1.3490 -4.9185 4.5375 26 6 1.9422 -4.8173 3.1309 27 6 2.1077 -0.7767 1.1946 28 1 -0.3634 0.4822 0.9075 29 1 -0.3634 0.5448 -0.8713 30 1 -0.3633 -1.0271 -0.0361 31 1 1.4179 2.1205 -0.4820 32 1 2.3225 1.7535 1.0190 33 1 3.6418 4.2507 1.4108 34 1 3.9090 -0.0830 -2.3329 35 1 2.4645 0.9140 -2.6872 36 1 0.4181 -0.3389 -2.5371 37 1 1.4810 -1.6617 -3.0743 38 1 0.3882 -1.9043 -1.6905 39 1 4.0520 -1.5266 -0.7326 40 1 2.8664 -2.7284 -1.3179 41 1 3.8905 -2.9938 3.6881 42 1 2.9297 -1.5255 3.3893 43 1 1.2870 -2.2516 5.0985 44 1 2.9195 -2.1211 5.7963 45 1 1.8072 -4.2147 6.5216 46 1 3.2344 -4.5644 5.5176 47 1 0.3439 -4.4966 4.5392 48 1 1.3047 -5.9652 4.8383 49 1 1.3148 -5.3696 2.4314 50 1 2.9473 -5.2391 3.1292 51 1 1.3354 -0.9332 1.9477 52 1 2.9462 -0.2299 1.6260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982702894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:29 Heat of formation + Delta-G solvation = -82.070233 kcal Electronic energy + Delta-G solvation = -32759.070041 eV Core-core repulsion = 28672.233218 eV Total energy + Delta-G solvation = -4086.836823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.08740 -41.84187 -40.18561 -38.25692 -36.45265 -34.70593 -33.17462 -32.52226 -31.89121 -31.69949 -28.52722 -27.67412 -27.09914 -26.47383 -24.71236 -23.80902 -23.48878 -21.71429 -21.01984 -20.58770 -19.38501 -18.70048 -18.23066 -17.59283 -17.12248 -16.78966 -16.51112 -16.32476 -15.78440 -15.61562 -15.39234 -15.11920 -14.90611 -14.65041 -14.56871 -14.50132 -14.38376 -13.87514 -13.53402 -13.46288 -13.34111 -13.27172 -13.21306 -13.06869 -12.93210 -12.80244 -12.71969 -12.62425 -12.49283 -12.14826 -12.10234 -11.92664 -11.76866 -11.72399 -11.52990 -11.45583 -11.23470 -11.19601 -11.06412 -10.79720 -10.64732 -9.81657 -8.84739 -7.87502 -5.21120 1.22159 1.46220 1.47150 1.53667 1.74199 2.49033 2.99326 3.28183 3.31441 3.38418 3.46074 3.53745 3.59620 3.66730 3.92181 4.05882 4.07975 4.18154 4.19549 4.22465 4.31585 4.34074 4.40096 4.40945 4.53922 4.61351 4.66959 4.76417 4.80737 4.83164 4.87275 4.91406 4.93293 4.95678 4.98809 5.03507 5.11667 5.13353 5.14776 5.18616 5.25664 5.26924 5.28657 5.34448 5.43336 5.47107 5.49237 5.60135 5.76235 6.18548 6.36667 6.79817 7.02256 7.70347 8.50179 9.25505 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.004406 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.028018 B = 6353.984889 C = 7496.813067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C 0.181 3.819 4 N -0.619 5.619 5 C -0.234 4.234 6 H 0.072 0.928 7 C -0.053 4.053 8 N -0.941 5.941 9 Si 0.966 3.034 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.283 1.283 13 C 0.138 3.862 14 C -0.073 4.073 15 C -0.118 4.118 16 C 0.126 3.874 17 N -0.599 5.599 18 C 0.508 3.492 19 O -0.564 6.564 20 C 0.121 3.879 21 F -0.192 7.192 22 C -0.143 4.143 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.119 4.119 27 C 0.121 3.879 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.059 0.941 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 -14.795 6.410 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C 0.056 3.944 4 N -0.343 5.343 5 C -0.363 4.363 6 H 0.090 0.910 7 C -0.247 4.247 8 N -0.589 5.589 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.209 1.209 13 C 0.012 3.988 14 C -0.076 4.076 15 C -0.175 4.175 16 C 0.004 3.996 17 N -0.329 5.329 18 C 0.296 3.704 19 O -0.443 6.443 20 C 0.099 3.901 21 F -0.173 7.173 22 C -0.181 4.181 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.001 4.001 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.551 -15.178 6.291 18.082 hybrid contribution 1.184 1.124 -0.083 1.634 sum -6.367 -14.054 6.207 16.631 Atomic orbital electron populations 1.21644 0.91415 1.02035 1.02444 1.22385 0.96601 0.96403 0.93337 1.21845 0.85475 0.90600 0.96473 1.45738 1.08088 1.53534 1.26981 1.19214 0.85204 1.09508 1.22343 0.91018 1.25479 0.99936 0.97495 1.01787 1.70033 1.27168 1.25775 1.35926 0.85346 0.79997 0.77379 0.77761 1.20547 1.21846 1.20929 1.21807 0.96103 0.90476 0.90365 1.22319 0.95617 0.93915 0.95706 1.21633 0.96705 1.01308 0.97863 1.22087 0.97580 0.98094 0.81878 1.48603 1.61352 1.08206 1.14737 1.21070 0.79820 0.81415 0.88093 1.90667 1.47836 1.36829 1.69002 1.21143 0.79525 0.97672 0.91717 1.92835 1.39629 1.87552 1.97255 1.22215 0.99366 1.00309 0.96176 1.21517 1.01765 0.98361 0.93579 1.21604 1.00663 0.93906 0.99528 1.21557 0.99476 1.02103 0.92119 1.21913 1.03930 0.90770 0.99097 1.22292 0.98636 0.82054 0.97140 0.92192 0.91486 0.91611 0.97266 0.92279 0.94184 0.93334 0.95267 0.91181 0.91466 0.91924 0.93056 0.90355 0.89654 0.91340 0.91259 0.89933 0.89598 0.91255 0.91376 0.89180 0.90975 0.89566 0.88857 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 7.47 71.98 0.54 -2.76 16 2 C -0.08 -2.95 1.06 -50.77 -0.05 -3.00 16 3 C 0.18 8.20 4.89 85.98 0.42 8.62 16 4 N -0.62 -30.26 3.43 -681.41 -2.34 -32.60 16 5 C -0.23 -12.70 10.36 84.04 0.87 -11.83 16 6 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 7 C -0.05 -2.90 5.42 84.86 0.46 -2.44 16 8 N -0.94 -54.09 10.83 21.65 0.23 -53.85 16 9 Si 0.97 44.79 29.56 68.60 2.03 46.82 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.14 5.47 6.09 86.52 0.53 6.00 16 14 C -0.07 -2.41 1.09 -50.66 -0.06 -2.47 16 15 C -0.12 -3.01 7.55 71.98 0.54 -2.46 16 16 C 0.13 4.37 6.14 86.61 0.53 4.90 16 17 N -0.60 -20.45 3.32 -814.65 -2.70 -23.15 16 18 C 0.51 16.92 6.90 87.65 0.60 17.52 16 19 O -0.56 -21.36 16.25 -3.05 -0.05 -21.41 16 20 C 0.12 3.19 0.73 -11.54 -0.01 3.18 16 21 F -0.19 -5.21 13.75 44.97 0.62 -4.59 16 22 C -0.14 -3.45 4.85 30.59 0.15 -3.30 16 23 C -0.11 -2.11 5.80 30.60 0.18 -1.93 16 24 C -0.12 -1.76 5.92 30.60 0.18 -1.58 16 25 C -0.12 -1.85 5.80 30.59 0.18 -1.67 16 26 C -0.12 -2.62 4.34 30.60 0.13 -2.49 16 27 C 0.12 4.19 4.48 86.50 0.39 4.58 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.77 7.16 -2.39 -0.02 1.76 16 30 H 0.06 1.66 7.10 -2.38 -0.02 1.64 16 31 H 0.01 0.45 7.97 -2.39 -0.02 0.43 16 32 H 0.06 3.04 6.10 -2.38 -0.01 3.02 16 33 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 35 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 36 H 0.07 1.70 7.17 -2.39 -0.02 1.68 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.51 7.09 -2.39 -0.02 1.49 16 39 H 0.05 2.01 7.47 -2.39 -0.02 1.99 16 40 H 0.08 2.57 7.71 -2.38 -0.02 2.55 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 1.89 6.08 -2.39 -0.01 1.87 16 43 H 0.07 1.32 7.80 -2.39 -0.02 1.30 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 1.94 8.00 -2.39 -0.02 1.92 16 51 H 0.09 2.93 5.43 -2.39 -0.01 2.91 16 52 H 0.05 2.03 7.18 -2.38 -0.02 2.01 16 Total: -1.00 -64.26 384.30 4.27 -59.99 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.90 Total: 19.91 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.58 Total: 8.88 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.80 Total: -109.60 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.62 Total: -4.59 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.26 4.27 -59.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982702894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.079 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds