Wall clock time and date at job start Tue Mar 31 2020 20:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99826 * 2 1 4 4 H 1.07997 * 119.99783 * 212.21763 * 3 2 1 5 5 C 1.38813 * 120.00195 * 32.20927 * 3 2 1 6 6 N 1.31614 * 119.99946 * 6.16008 * 5 3 2 7 7 Si 1.86799 * 120.00072 * 186.15332 * 5 3 2 8 8 H 1.48505 * 109.47033 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47072 * 120.00559 * 7 5 3 10 10 H 1.48503 * 109.47081 * 240.00513 * 7 5 3 11 11 C 1.46494 * 119.99755 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46601 * 300.00199 * 11 2 1 13 13 C 1.53190 * 109.31409 * 181.38770 * 12 11 2 14 14 N 1.46922 * 108.89441 * 305.29234 * 13 12 11 15 15 C 1.34773 * 120.63314 * 233.67822 * 14 13 12 16 16 O 1.21282 * 120.00474 * 176.77297 * 15 14 13 17 17 C 1.50700 * 119.99975 * 356.76856 * 15 14 13 18 18 H 1.08997 * 109.50001 * 52.80723 * 17 15 14 19 19 C 1.53038 * 109.49820 * 172.90551 * 17 15 14 20 20 C 1.53042 * 109.53947 * 181.31601 * 19 17 15 21 21 C 1.53198 * 109.31243 * 298.63815 * 20 19 17 22 22 N 1.46924 * 108.77779 * 54.62966 * 21 20 19 23 23 C 1.34776 * 120.62937 * 126.36629 * 22 21 20 24 24 N 1.34783 * 120.00144 * 4.89497 * 23 22 21 25 25 O 1.21588 * 120.00296 * 184.88800 * 23 22 21 26 26 C 1.46921 * 118.74046 * 306.39643 * 22 21 20 27 27 C 1.47208 * 118.55443 * 53.53914 * 14 13 12 28 28 C 1.53040 * 109.46072 * 60.07357 * 11 2 1 29 29 H 1.08993 * 109.47152 * 274.71904 * 1 2 3 30 30 H 1.09004 * 109.47187 * 34.71744 * 1 2 3 31 31 H 1.08998 * 109.46914 * 154.71214 * 1 2 3 32 32 H 0.97000 * 120.00119 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.44333 * 180.02562 * 11 2 1 34 34 H 1.09006 * 109.49725 * 61.43396 * 12 11 2 35 35 H 1.09004 * 109.49488 * 301.34577 * 12 11 2 36 36 H 1.08994 * 109.58610 * 65.15845 * 13 12 11 37 37 H 1.09001 * 109.58447 * 185.43641 * 13 12 11 38 38 H 1.08992 * 109.46192 * 301.33381 * 19 17 15 39 39 H 1.08998 * 109.46072 * 61.29766 * 19 17 15 40 40 H 1.08994 * 109.50256 * 178.68469 * 20 19 17 41 41 H 1.08997 * 109.52713 * 58.60095 * 20 19 17 42 42 H 1.09000 * 109.58245 * 294.84658 * 21 20 19 43 43 H 1.09000 * 109.70193 * 174.49456 * 21 20 19 44 44 H 0.97003 * 119.99487 * 355.02819 * 24 23 22 45 45 H 0.96999 * 119.99962 * 175.02672 * 24 23 22 46 46 H 1.09002 * 109.58699 * 293.81838 * 26 22 21 47 47 H 1.09003 * 109.58974 * 173.39193 * 26 22 21 48 48 H 1.09002 * 109.53593 * 186.67417 * 27 14 13 49 49 H 1.09007 * 109.67066 * 66.36834 * 27 14 13 50 50 H 1.09003 * 109.49942 * 298.56115 * 28 11 2 51 51 H 1.09009 * 109.49944 * 58.62970 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1049 1.2579 -0.4986 5 6 1.6159 2.2956 0.6408 6 7 0.5133 2.1788 1.3500 7 14 2.4623 3.9545 0.4965 8 1 3.6744 3.8198 -0.3509 9 1 1.5322 4.9326 -0.1226 10 1 2.8531 4.4300 1.8480 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0705 1.2505 13 6 2.6213 -3.3807 1.2652 14 7 2.3855 -4.0940 0.0025 15 6 1.9586 -5.3724 0.0053 16 8 1.7116 -5.9316 -1.0422 17 6 1.7885 -6.1071 1.3100 18 1 1.1588 -5.5201 1.9787 19 6 1.1319 -7.4648 1.0498 20 6 0.9287 -8.1979 2.3777 21 6 2.2903 -8.4378 3.0376 22 7 2.9900 -7.1517 3.1592 23 6 3.4666 -6.7392 4.3506 24 7 3.3913 -7.5508 5.4241 25 8 3.9645 -5.6351 4.4570 26 6 3.1598 -6.3233 1.9577 27 6 2.6226 -3.3810 -1.2633 28 6 1.8289 -2.0707 -1.2496 29 1 -0.3633 0.0845 1.0241 30 1 -0.3634 0.8447 -0.5853 31 1 -0.3633 -0.9292 -0.4390 32 1 0.1405 2.9542 1.7981 33 1 3.2691 -1.0690 0.0009 34 1 0.7603 -2.2918 1.2382 35 1 2.0688 -1.4890 2.1403 36 1 3.6842 -3.1629 1.3689 37 1 2.2916 -3.9982 2.1007 38 1 0.1665 -7.3146 0.5666 39 1 1.7739 -8.0602 0.4008 40 1 0.4398 -9.1546 2.1941 41 1 0.3068 -7.5923 3.0369 42 1 2.8797 -9.1176 2.4223 43 1 2.1477 -8.8714 4.0274 44 1 2.9303 -8.4016 5.3574 45 1 3.7981 -7.2840 6.2632 46 1 3.8202 -6.8307 1.2544 47 1 3.5887 -5.3604 2.2353 48 1 2.2921 -3.9997 -2.0976 49 1 3.6855 -3.1633 -1.3683 50 1 0.7617 -2.2920 -1.2385 51 1 2.0707 -1.4892 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985528762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:58 Heat of formation + Delta-G solvation = -38.308071 kcal Electronic energy + Delta-G solvation = -31239.929988 eV Core-core repulsion = 27174.910796 eV Total energy + Delta-G solvation = -4065.019192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97175 -39.86284 -37.84719 -37.03708 -35.02121 -34.30369 -32.65089 -32.41380 -31.55020 -30.38641 -29.63099 -25.94456 -25.76228 -25.34988 -23.98676 -22.88516 -22.16266 -21.53563 -20.06133 -19.49079 -18.84610 -18.28740 -17.28138 -16.96384 -16.68998 -15.98322 -15.72395 -15.16963 -15.12640 -14.96231 -14.67217 -14.18145 -13.89209 -13.88805 -13.75485 -13.42693 -13.34944 -13.25520 -13.05662 -12.77699 -12.24026 -12.19745 -11.77419 -11.58102 -11.48306 -11.35991 -11.18952 -10.97282 -10.85929 -10.80650 -10.75061 -10.44658 -10.36358 -10.17132 -10.06895 -9.97642 -9.89097 -9.65606 -9.48542 -8.93761 -8.54176 -8.40605 -6.58781 -5.69271 -3.25347 2.35790 2.72383 2.93728 3.13957 3.38654 3.46066 3.47912 3.75775 4.28803 4.42462 4.50146 4.54406 4.64358 4.69431 4.92178 5.02099 5.18260 5.24069 5.30590 5.38010 5.42058 5.45132 5.48848 5.53305 5.53654 5.60680 5.75635 5.77493 5.87891 5.99361 6.02941 6.04648 6.10677 6.23642 6.34328 6.42937 6.46233 6.56932 6.61858 6.68570 6.84388 7.04148 7.07435 7.37666 7.52600 7.57118 7.78337 7.84505 8.25451 8.33310 8.49470 9.28320 9.89332 10.43991 11.33600 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002883 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.652924 B = 9708.641435 C =10767.491473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.594 5.594 3 C -0.258 4.258 4 H 0.064 0.936 5 C 0.009 3.991 6 N -0.903 5.903 7 Si 0.902 3.098 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.103 3.897 14 N -0.602 5.602 15 C 0.522 3.478 16 O -0.548 6.548 17 C -0.123 4.123 18 H 0.101 0.899 19 C -0.098 4.098 20 C -0.136 4.136 21 C 0.110 3.890 22 N -0.627 5.627 23 C 0.708 3.292 24 N -0.869 5.869 25 O -0.585 6.585 26 C 0.135 3.865 27 C 0.115 3.885 28 C -0.146 4.146 29 H 0.032 0.968 30 H 0.033 0.967 31 H -0.001 1.001 32 H 0.252 0.748 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.395 0.605 45 H 0.414 0.586 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.060 0.940 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -25.085 4.997 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.315 5.315 3 C -0.388 4.388 4 H 0.082 0.918 5 C -0.190 4.190 6 N -0.547 5.547 7 Si 0.732 3.268 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.020 4.020 14 N -0.335 5.335 15 C 0.309 3.691 16 O -0.426 6.426 17 C -0.146 4.146 18 H 0.119 0.881 19 C -0.136 4.136 20 C -0.174 4.174 21 C -0.014 4.014 22 N -0.365 5.365 23 C 0.408 3.592 24 N -0.439 5.439 25 O -0.462 6.462 26 C 0.012 3.988 27 C -0.008 4.008 28 C -0.186 4.186 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.225 0.775 45 H 0.246 0.754 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.860 -24.439 4.432 25.002 hybrid contribution 0.107 0.737 0.499 0.896 sum 2.967 -23.703 4.931 24.391 Atomic orbital electron populations 1.20758 0.83265 0.95192 0.99250 1.43843 1.01491 1.00171 1.86021 1.19186 1.04091 0.87601 1.27936 0.91818 1.25269 0.97833 0.99056 0.96863 1.70016 1.21488 1.28899 1.34279 0.86226 0.79032 0.84221 0.77322 1.20232 1.21697 1.21612 1.20323 0.96084 0.86089 0.90419 1.22490 0.99666 0.94331 1.01895 1.22005 1.00769 0.94503 0.84682 1.48278 1.65294 1.11624 1.08264 1.20281 0.76675 0.81601 0.90545 1.90662 1.51083 1.67352 1.33529 1.21715 0.99101 0.98047 0.95713 0.88121 1.21315 1.01850 0.93872 0.96581 1.21961 0.96530 1.01539 0.97386 1.21699 0.93462 0.85102 1.01093 1.47210 1.60430 1.21512 1.07374 1.15856 0.78940 0.83951 0.80456 1.43161 1.63681 1.23589 1.13482 1.91009 1.51397 1.19883 1.83958 1.21526 0.94910 0.97340 0.85048 1.21704 0.99781 0.93588 0.85720 1.22461 1.00155 0.94769 1.01199 0.95000 0.94827 0.98280 0.93815 0.91871 0.92344 0.90409 0.91104 0.90161 0.90718 0.90738 0.90102 0.91196 0.90968 0.90414 0.77488 0.75385 0.91015 0.87521 0.89685 0.91622 0.92110 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.07 59.85 0.48 4.45 16 2 N -0.59 -14.76 2.78 -173.44 -0.48 -15.25 16 3 C -0.26 -7.08 9.49 -15.06 -0.14 -7.22 16 4 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 5 C 0.01 0.25 5.24 -17.43 -0.09 0.16 16 6 N -0.90 -26.41 10.94 55.49 0.61 -25.80 16 7 Si 0.90 21.90 29.56 -169.99 -5.02 16.87 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.18 3.60 2.55 -67.89 -0.17 3.43 16 12 C -0.14 -2.60 5.34 -26.61 -0.14 -2.74 16 13 C 0.10 1.50 5.09 -3.71 -0.02 1.48 16 14 N -0.60 -8.76 2.98 -172.54 -0.51 -9.28 16 15 C 0.52 7.42 7.00 -10.99 -0.08 7.35 16 16 O -0.55 -9.27 15.44 5.56 0.09 -9.18 16 17 C -0.12 -1.36 1.82 -91.65 -0.17 -1.52 16 18 H 0.10 1.14 7.16 -51.93 -0.37 0.77 16 19 C -0.10 -0.90 4.47 -26.69 -0.12 -1.01 16 20 C -0.14 -0.83 6.08 -26.61 -0.16 -0.99 16 21 C 0.11 0.61 6.39 -3.71 -0.02 0.58 16 22 N -0.63 -5.67 2.97 -178.49 -0.53 -6.20 16 23 C 0.71 7.68 8.57 -86.91 -0.75 6.93 16 24 N -0.87 -5.48 8.78 27.64 0.24 -5.24 16 25 O -0.59 -9.14 16.60 5.29 0.09 -9.05 16 26 C 0.14 1.43 5.36 -3.71 -0.02 1.41 16 27 C 0.11 1.72 6.45 -3.56 -0.02 1.70 16 28 C -0.15 -2.55 5.32 -26.61 -0.14 -2.69 16 29 H 0.03 0.86 7.21 -51.93 -0.37 0.48 16 30 H 0.03 0.89 7.74 -51.93 -0.40 0.49 16 31 H 0.00 -0.03 6.47 -51.93 -0.34 -0.36 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 34 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.07 4.85 -51.93 -0.25 0.82 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.23 5.64 -51.93 -0.29 -0.06 16 44 H 0.39 1.28 6.31 -40.82 -0.26 1.02 16 45 H 0.41 2.25 8.93 -40.82 -0.36 1.89 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.11 1.33 4.81 -51.93 -0.25 1.08 16 48 H 0.08 1.30 7.02 -51.93 -0.36 0.94 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16 51 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -34.64 384.56 -9.49 -44.14 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.19 Total: 1.90 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -1.56 Total: 11.30 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.68 Total: -61.77 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.64 -9.49 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985528762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.827 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds