Wall clock time and date at job start Tue Mar 31 2020 20:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99826 * 2 1 4 4 H 1.07997 * 119.99783 * 212.21763 * 3 2 1 5 5 C 1.38813 * 120.00195 * 32.20927 * 3 2 1 6 6 N 1.31614 * 119.99946 * 6.16008 * 5 3 2 7 7 Si 1.86799 * 120.00072 * 186.15332 * 5 3 2 8 8 H 1.48505 * 109.47033 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47072 * 120.00559 * 7 5 3 10 10 H 1.48503 * 109.47081 * 240.00513 * 7 5 3 11 11 C 1.46494 * 119.99755 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46601 * 300.00199 * 11 2 1 13 13 C 1.53190 * 109.31409 * 181.38770 * 12 11 2 14 14 N 1.46922 * 108.89441 * 305.29234 * 13 12 11 15 15 C 1.34773 * 120.63314 * 233.67822 * 14 13 12 16 16 O 1.21282 * 120.00474 * 176.77297 * 15 14 13 17 17 C 1.50700 * 119.99975 * 356.76856 * 15 14 13 18 18 H 1.08997 * 109.50001 * 52.80723 * 17 15 14 19 19 C 1.53038 * 109.49820 * 172.90551 * 17 15 14 20 20 C 1.53042 * 109.53947 * 181.31601 * 19 17 15 21 21 C 1.53198 * 109.31243 * 298.63815 * 20 19 17 22 22 N 1.46924 * 108.77779 * 54.62966 * 21 20 19 23 23 C 1.34776 * 120.62937 * 126.36629 * 22 21 20 24 24 N 1.34783 * 120.00144 * 4.89497 * 23 22 21 25 25 O 1.21588 * 120.00296 * 184.88800 * 23 22 21 26 26 C 1.46921 * 118.74046 * 306.39643 * 22 21 20 27 27 C 1.47208 * 118.55443 * 53.53914 * 14 13 12 28 28 C 1.53040 * 109.46072 * 60.07357 * 11 2 1 29 29 H 1.08993 * 109.47152 * 274.71904 * 1 2 3 30 30 H 1.09004 * 109.47187 * 34.71744 * 1 2 3 31 31 H 1.08998 * 109.46914 * 154.71214 * 1 2 3 32 32 H 0.97000 * 120.00119 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.44333 * 180.02562 * 11 2 1 34 34 H 1.09006 * 109.49725 * 61.43396 * 12 11 2 35 35 H 1.09004 * 109.49488 * 301.34577 * 12 11 2 36 36 H 1.08994 * 109.58610 * 65.15845 * 13 12 11 37 37 H 1.09001 * 109.58447 * 185.43641 * 13 12 11 38 38 H 1.08992 * 109.46192 * 301.33381 * 19 17 15 39 39 H 1.08998 * 109.46072 * 61.29766 * 19 17 15 40 40 H 1.08994 * 109.50256 * 178.68469 * 20 19 17 41 41 H 1.08997 * 109.52713 * 58.60095 * 20 19 17 42 42 H 1.09000 * 109.58245 * 294.84658 * 21 20 19 43 43 H 1.09000 * 109.70193 * 174.49456 * 21 20 19 44 44 H 0.97003 * 119.99487 * 355.02819 * 24 23 22 45 45 H 0.96999 * 119.99962 * 175.02672 * 24 23 22 46 46 H 1.09002 * 109.58699 * 293.81838 * 26 22 21 47 47 H 1.09003 * 109.58974 * 173.39193 * 26 22 21 48 48 H 1.09002 * 109.53593 * 186.67417 * 27 14 13 49 49 H 1.09007 * 109.67066 * 66.36834 * 27 14 13 50 50 H 1.09003 * 109.49942 * 298.56115 * 28 11 2 51 51 H 1.09009 * 109.49944 * 58.62970 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1049 1.2579 -0.4986 5 6 1.6159 2.2956 0.6408 6 7 0.5133 2.1788 1.3500 7 14 2.4623 3.9545 0.4965 8 1 3.6744 3.8198 -0.3509 9 1 1.5322 4.9326 -0.1226 10 1 2.8531 4.4300 1.8480 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0705 1.2505 13 6 2.6213 -3.3807 1.2652 14 7 2.3855 -4.0940 0.0025 15 6 1.9586 -5.3724 0.0053 16 8 1.7116 -5.9316 -1.0422 17 6 1.7885 -6.1071 1.3100 18 1 1.1588 -5.5201 1.9787 19 6 1.1319 -7.4648 1.0498 20 6 0.9287 -8.1979 2.3777 21 6 2.2903 -8.4378 3.0376 22 7 2.9900 -7.1517 3.1592 23 6 3.4666 -6.7392 4.3506 24 7 3.3913 -7.5508 5.4241 25 8 3.9645 -5.6351 4.4570 26 6 3.1598 -6.3233 1.9577 27 6 2.6226 -3.3810 -1.2633 28 6 1.8289 -2.0707 -1.2496 29 1 -0.3633 0.0845 1.0241 30 1 -0.3634 0.8447 -0.5853 31 1 -0.3633 -0.9292 -0.4390 32 1 0.1405 2.9542 1.7981 33 1 3.2691 -1.0690 0.0009 34 1 0.7603 -2.2918 1.2382 35 1 2.0688 -1.4890 2.1403 36 1 3.6842 -3.1629 1.3689 37 1 2.2916 -3.9982 2.1007 38 1 0.1665 -7.3146 0.5666 39 1 1.7739 -8.0602 0.4008 40 1 0.4398 -9.1546 2.1941 41 1 0.3068 -7.5923 3.0369 42 1 2.8797 -9.1176 2.4223 43 1 2.1477 -8.8714 4.0274 44 1 2.9303 -8.4016 5.3574 45 1 3.7981 -7.2840 6.2632 46 1 3.8202 -6.8307 1.2544 47 1 3.5887 -5.3604 2.2353 48 1 2.2921 -3.9997 -2.0976 49 1 3.6855 -3.1633 -1.3683 50 1 0.7617 -2.2920 -1.2385 51 1 2.0707 -1.4892 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985528762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:57 Heat of formation + Delta-G solvation = -62.616585 kcal Electronic energy + Delta-G solvation = -31240.984084 eV Core-core repulsion = 27174.910796 eV Total energy + Delta-G solvation = -4066.073288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89967 -40.88568 -39.16188 -38.03854 -36.70369 -35.10642 -34.00648 -33.34242 -32.72481 -31.69709 -31.22679 -28.01494 -26.75752 -26.42238 -25.16876 -24.17935 -23.57746 -22.53876 -21.16766 -20.48192 -19.86978 -19.25041 -18.75976 -18.23764 -17.84971 -17.03673 -16.96381 -16.68199 -16.07981 -15.90523 -15.71088 -15.39108 -15.24145 -15.16069 -15.04068 -14.74660 -14.56886 -14.27132 -14.13167 -13.87323 -13.84140 -13.56653 -13.12545 -13.00155 -12.79272 -12.73616 -12.52058 -12.40052 -12.23493 -12.07094 -11.99024 -11.94415 -11.86819 -11.64386 -11.59073 -11.31843 -11.23422 -10.78336 -10.68189 -10.64029 -9.71803 -9.61994 -8.64689 -7.81405 -5.40398 1.44362 1.45528 1.46782 1.57114 1.77122 2.00906 2.14692 2.49719 3.21879 3.30994 3.41232 3.61259 3.67873 3.79467 3.83617 4.02302 4.03290 4.11714 4.15654 4.18640 4.33456 4.36537 4.50457 4.53757 4.57266 4.65550 4.73837 4.75085 4.81417 4.83142 4.87980 4.90454 4.99154 5.03900 5.08494 5.17136 5.20052 5.32065 5.39858 5.43176 5.48421 5.57711 5.65912 5.71554 5.83918 6.03513 6.36738 6.39805 6.92280 7.08626 7.17478 7.62817 7.86984 8.36433 9.19726 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002883 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.652924 B = 9708.641435 C =10767.491473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.267 4.267 4 H 0.067 0.933 5 C -0.046 4.046 6 N -0.935 5.935 7 Si 0.967 3.033 8 H -0.265 1.265 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.174 3.826 12 C -0.133 4.133 13 C 0.120 3.880 14 N -0.605 5.605 15 C 0.521 3.479 16 O -0.573 6.573 17 C -0.115 4.115 18 H 0.097 0.903 19 C -0.096 4.096 20 C -0.128 4.128 21 C 0.105 3.895 22 N -0.624 5.624 23 C 0.701 3.299 24 N -0.847 5.847 25 O -0.640 6.640 26 C 0.139 3.861 27 C 0.121 3.879 28 C -0.131 4.131 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.024 0.976 32 H 0.248 0.752 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.412 0.588 45 H 0.420 0.580 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -27.716 5.383 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.332 5.332 3 C -0.397 4.397 4 H 0.084 0.916 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.189 1.189 9 H -0.219 1.219 10 H -0.218 1.218 11 C 0.068 3.932 12 C -0.173 4.173 13 C -0.003 4.003 14 N -0.337 5.337 15 C 0.310 3.690 16 O -0.453 6.453 17 C -0.137 4.137 18 H 0.115 0.885 19 C -0.134 4.134 20 C -0.166 4.166 21 C -0.017 4.017 22 N -0.362 5.362 23 C 0.400 3.600 24 N -0.419 5.419 25 O -0.522 6.522 26 C 0.015 3.985 27 C -0.002 4.002 28 C -0.171 4.171 29 H 0.023 0.977 30 H 0.026 0.974 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.246 0.754 45 H 0.253 0.747 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.687 -27.163 4.824 27.834 hybrid contribution -0.167 1.468 0.343 1.517 sum 3.520 -25.695 5.167 26.445 Atomic orbital electron populations 1.20442 0.83676 0.95232 0.97299 1.44069 1.01562 1.01308 1.86225 1.19514 1.04081 0.88803 1.27305 0.91557 1.26014 0.98619 1.02493 0.97031 1.70182 1.22912 1.29472 1.35463 0.85210 0.78267 0.79907 0.77104 1.18910 1.21912 1.21789 1.20510 0.95460 0.84842 0.92417 1.22276 0.99527 0.95683 0.99794 1.21831 1.00605 0.92662 0.85212 1.48320 1.65422 1.11976 1.07944 1.20829 0.75506 0.81267 0.91392 1.90649 1.52053 1.67805 1.34818 1.21694 0.99602 0.98733 0.93698 0.88470 1.21326 1.00818 0.92915 0.98381 1.21938 0.97038 1.02278 0.95367 1.22006 0.92844 0.83582 1.03255 1.47216 1.60307 1.22348 1.06300 1.16116 0.78713 0.83673 0.81475 1.42949 1.62867 1.23578 1.12489 1.90972 1.53865 1.22438 1.84923 1.21351 0.94358 0.97032 0.85776 1.21618 1.00310 0.92114 0.86119 1.22256 0.99724 0.95642 0.99513 0.97655 0.97408 0.95763 0.94305 0.92084 0.93421 0.92675 0.90109 0.88788 0.91932 0.90930 0.87465 0.91571 0.89459 0.87321 0.75426 0.74713 0.90449 0.89476 0.89559 0.89856 0.93334 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.11 8.07 127.77 1.03 10.14 16 2 N -0.61 -30.87 2.78 -702.64 -1.95 -32.82 16 3 C -0.27 -14.80 9.49 84.03 0.80 -14.00 16 4 H 0.07 3.58 7.84 -2.91 -0.02 3.56 16 5 C -0.05 -2.60 5.24 84.86 0.44 -2.15 16 6 N -0.93 -56.18 10.94 21.65 0.24 -55.94 16 7 Si 0.97 45.59 29.56 68.60 2.03 47.61 16 8 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 C 0.17 7.05 2.55 45.02 0.11 7.16 16 12 C -0.13 -4.86 5.34 30.67 0.16 -4.70 16 13 C 0.12 3.40 5.09 86.36 0.44 3.84 16 14 N -0.60 -17.02 2.98 -818.20 -2.44 -19.46 16 15 C 0.52 14.30 7.00 87.66 0.61 14.91 16 16 O -0.57 -18.83 15.44 -3.04 -0.05 -18.88 16 17 C -0.12 -2.38 1.82 -11.46 -0.02 -2.40 16 18 H 0.10 2.10 7.16 -2.39 -0.02 2.09 16 19 C -0.10 -1.57 4.47 30.62 0.14 -1.43 16 20 C -0.13 -1.14 6.08 30.67 0.19 -0.96 16 21 C 0.10 0.77 6.39 86.36 0.55 1.32 16 22 N -0.62 -9.91 2.97 -836.89 -2.49 -12.39 16 23 C 0.70 14.02 8.57 179.05 1.53 15.55 16 24 N -0.85 -8.50 8.78 -184.74 -1.62 -10.12 16 25 O -0.64 -19.79 16.60 -3.99 -0.07 -19.86 16 26 C 0.14 2.76 5.36 86.37 0.46 3.22 16 27 C 0.12 3.49 6.45 86.31 0.56 4.05 16 28 C -0.13 -4.54 5.32 30.67 0.16 -4.38 16 29 H 0.01 0.29 7.21 -2.39 -0.02 0.27 16 30 H 0.01 0.40 7.74 -2.38 -0.02 0.38 16 31 H 0.02 1.08 6.47 -2.39 -0.02 1.07 16 32 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.06 2.48 7.89 -2.38 -0.02 2.47 16 34 H 0.05 1.83 7.72 -2.38 -0.02 1.81 16 35 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.09 2.47 4.85 -2.39 -0.01 2.45 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 40 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.11 0.13 5.64 -2.39 -0.01 0.12 16 44 H 0.41 1.13 6.31 -92.71 -0.59 0.54 16 45 H 0.42 3.65 8.93 -92.71 -0.83 2.83 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.09 2.11 4.81 -2.39 -0.01 2.09 16 48 H 0.09 2.54 7.02 -2.39 -0.02 2.52 16 49 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 50 H 0.05 1.79 6.72 -2.39 -0.02 1.77 16 51 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -77.25 384.56 0.37 -76.88 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.45 Total: 14.81 kcal Atomic # 6 Polarization: 23.00 SS G_CDS: 7.18 Total: 30.18 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -8.27 Total: -130.74 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.11 Total: -38.73 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -77.25 0.37 -76.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985528762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.262 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds