Wall clock time and date at job start Tue Mar 31 2020 20:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 120.00298 * 2 1 4 4 H 1.08001 * 120.00409 * 146.56601 * 3 2 1 5 5 C 1.38813 * 119.99761 * 326.57396 * 3 2 1 6 6 N 1.31620 * 119.99904 * 158.06682 * 5 3 2 7 7 Si 1.86794 * 119.99897 * 338.05830 * 5 3 2 8 8 H 1.48503 * 109.47045 * 90.11658 * 7 5 3 9 9 H 1.48501 * 109.47259 * 210.11495 * 7 5 3 10 10 H 1.48504 * 109.47484 * 330.11682 * 7 5 3 11 11 C 1.46504 * 119.99772 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45482 * 60.00665 * 11 2 1 13 13 C 1.53197 * 109.31301 * 178.62455 * 12 11 2 14 14 N 1.46924 * 108.77081 * 54.63221 * 13 12 11 15 15 C 1.34785 * 120.62604 * 126.37354 * 14 13 12 16 16 O 1.21279 * 119.99917 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99555 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.70471 * 350.62374 * 17 15 14 19 19 C 1.53194 * 109.58111 * 110.98307 * 17 15 14 20 20 C 1.53048 * 109.30747 * 174.41930 * 19 17 15 21 21 C 1.53042 * 109.53881 * 298.62968 * 20 19 17 22 22 C 1.52765 * 109.37990 * 61.24404 * 21 20 19 23 23 N 1.46924 * 109.58289 * 230.26617 * 17 15 14 24 24 C 1.34780 * 120.63283 * 6.58665 * 23 17 15 25 25 N 1.34778 * 120.00019 * 185.97030 * 24 23 17 26 26 O 1.21585 * 119.99951 * 5.96744 * 24 23 17 27 27 C 1.46924 * 118.74391 * 306.64076 * 14 13 12 28 28 C 1.52769 * 109.00374 * 53.31192 * 27 14 13 29 29 H 1.09000 * 109.47656 * 265.20276 * 1 2 3 30 30 H 1.09007 * 109.46912 * 25.20265 * 1 2 3 31 31 H 1.08995 * 109.47041 * 145.20020 * 1 2 3 32 32 H 0.97002 * 119.99864 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.45729 * 179.97438 * 11 2 1 34 34 H 1.09007 * 109.49628 * 58.67562 * 12 11 2 35 35 H 1.08999 * 109.50284 * 298.57816 * 12 11 2 36 36 H 1.09000 * 109.58437 * 294.84751 * 13 12 11 37 37 H 1.08991 * 109.58514 * 174.42386 * 13 12 11 38 38 H 1.09000 * 109.49533 * 294.36643 * 19 17 15 39 39 H 1.08993 * 109.50009 * 54.43818 * 19 17 15 40 40 H 1.09000 * 109.46180 * 58.65247 * 20 19 17 41 41 H 1.09005 * 109.45637 * 178.62210 * 20 19 17 42 42 H 1.09001 * 109.49626 * 181.31683 * 21 20 19 43 43 H 1.08998 * 109.49951 * 301.41788 * 21 20 19 44 44 H 1.09004 * 109.50759 * 185.70762 * 22 21 20 45 45 H 1.08999 * 109.43612 * 65.42392 * 22 21 20 46 46 H 0.97002 * 119.99609 * 355.34937 * 25 24 23 47 47 H 0.96998 * 120.00231 * 175.07723 * 25 24 23 48 48 H 1.08996 * 109.58603 * 173.14259 * 27 14 13 49 49 H 1.08998 * 109.59140 * 293.57380 * 27 14 13 50 50 H 1.08995 * 109.56143 * 185.54933 * 28 27 14 51 51 H 1.09002 * 109.38126 * 65.51338 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0957 1.2632 0.5153 5 6 1.6279 2.2886 -0.6622 6 7 2.0173 3.5010 -0.3296 7 14 0.3731 2.0517 -2.0255 8 1 -0.9947 2.0662 -1.4474 9 1 0.5038 3.1511 -3.0152 10 1 0.6124 0.7494 -2.6979 11 6 2.1975 -1.2688 0.0006 12 6 1.8276 -2.0715 -1.2489 13 6 2.6209 -3.3819 -1.2625 14 7 2.3842 -4.0910 0.0024 15 6 1.9569 -5.3693 0.0034 16 8 1.7637 -5.9449 -1.0465 17 6 1.7193 -6.0833 1.3091 18 1 2.0983 -5.4785 2.1329 19 6 0.2180 -6.3239 1.4969 20 6 -0.0057 -7.1696 2.7527 21 6 0.6837 -8.5257 2.5861 22 6 2.1858 -8.3123 2.4078 23 7 2.4079 -7.3810 1.2932 24 6 3.2234 -7.7133 0.2729 25 7 3.7536 -8.9508 0.2095 26 8 3.4808 -6.8967 -0.5903 27 6 2.6165 -3.3784 1.2661 28 6 1.8285 -2.0697 1.2513 29 1 -0.3634 -0.0859 1.0240 30 1 -0.3633 0.9299 -0.4376 31 1 -0.3633 -0.8438 -0.5865 32 1 1.6529 4.2716 -0.7927 33 1 3.2691 -1.0694 0.0000 34 1 2.0692 -1.4907 -2.1391 35 1 0.7603 -2.2924 -1.2367 36 1 3.6840 -3.1644 -1.3661 37 1 2.2895 -4.0010 -2.0961 38 1 -0.2928 -5.3673 1.6067 39 1 -0.1775 -6.8500 0.6282 40 1 0.4121 -6.6536 3.6172 41 1 -1.0747 -7.3217 2.9023 42 1 0.5042 -9.1362 3.4711 43 1 0.2838 -9.0316 1.7073 44 1 2.6654 -9.2662 2.1881 45 1 2.6037 -7.8930 3.3231 46 1 3.6032 -9.5804 0.9319 47 1 4.2822 -9.2131 -0.5604 48 1 2.2821 -3.9952 2.1002 49 1 3.6791 -3.1606 1.3729 50 1 2.0706 -1.4878 2.1405 51 1 0.7611 -2.2903 1.2403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985744772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:47 Heat of formation + Delta-G solvation = -2.588854 kcal Electronic energy + Delta-G solvation = -31889.173243 eV Core-core repulsion = 27825.702953 eV Total energy + Delta-G solvation = -4063.470290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18938 -39.26238 -37.65220 -37.26661 -35.09801 -34.01427 -32.73366 -32.22234 -31.62001 -30.55900 -30.27533 -26.33242 -26.07773 -24.97836 -24.04728 -22.75316 -22.15778 -21.62204 -20.37220 -19.51020 -18.97350 -17.83454 -17.32618 -16.80670 -16.71467 -15.79071 -15.54966 -15.39885 -15.13499 -14.87070 -14.68417 -14.39897 -14.17098 -13.92012 -13.77314 -13.58468 -13.44237 -13.19155 -12.93629 -12.56467 -12.39350 -12.29428 -12.15206 -11.84905 -11.74730 -11.56220 -11.41349 -11.25212 -11.07887 -10.90649 -10.82483 -10.41101 -10.24226 -9.90884 -9.90719 -9.80526 -9.65237 -9.43361 -9.23457 -8.83872 -8.47514 -8.12550 -6.85247 -5.95899 -3.33702 2.32943 2.99729 3.21220 3.32355 3.35913 3.50046 3.55100 3.90796 4.32371 4.38021 4.48259 4.54851 4.63738 4.68024 4.78749 4.96299 4.99729 5.05761 5.19441 5.30918 5.34352 5.43115 5.45232 5.47558 5.51356 5.64478 5.68379 5.69581 5.75225 5.91065 5.97410 6.04471 6.10311 6.16660 6.27001 6.32555 6.41337 6.49445 6.50297 6.54441 6.73364 6.75632 6.78943 6.95250 7.03795 7.67325 7.75716 8.05580 8.37791 8.46301 8.70670 9.00473 9.74550 10.14006 11.20180 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002951 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.871790 B = 9487.104956 C = 9933.253110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.606 5.606 3 C -0.265 4.265 4 H 0.081 0.919 5 C 0.029 3.971 6 N -0.905 5.905 7 Si 0.887 3.113 8 H -0.286 1.286 9 H -0.305 1.305 10 H -0.271 1.271 11 C 0.179 3.821 12 C -0.150 4.150 13 C 0.125 3.875 14 N -0.606 5.606 15 C 0.531 3.469 16 O -0.512 6.512 17 C 0.140 3.860 18 H 0.094 0.906 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.138 4.138 22 C 0.115 3.885 23 N -0.621 5.621 24 C 0.698 3.302 25 N -0.871 5.871 26 O -0.546 6.546 27 C 0.108 3.892 28 C -0.145 4.145 29 H 0.014 0.986 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.391 0.609 47 H 0.412 0.588 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 -27.835 9.455 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.329 5.329 3 C -0.393 4.393 4 H 0.099 0.901 5 C -0.171 4.171 6 N -0.547 5.547 7 Si 0.718 3.282 8 H -0.215 1.215 9 H -0.233 1.233 10 H -0.196 1.196 11 C 0.071 3.929 12 C -0.191 4.191 13 C 0.002 3.998 14 N -0.341 5.341 15 C 0.317 3.683 16 O -0.386 6.386 17 C 0.033 3.967 18 H 0.112 0.888 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.176 4.176 22 C -0.008 4.008 23 N -0.362 5.362 24 C 0.398 3.602 25 N -0.442 5.442 26 O -0.420 6.420 27 C -0.016 4.016 28 C -0.185 4.185 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.221 0.779 47 H 0.244 0.756 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.901 -27.262 8.321 28.518 hybrid contribution -0.642 -0.439 -0.613 0.990 sum -1.543 -27.702 7.708 28.795 Atomic orbital electron populations 1.21394 0.85148 0.99389 0.98038 1.44140 1.00422 1.01777 1.86529 1.18849 1.06496 0.85986 1.27984 0.90105 1.25387 0.98393 0.95214 0.98073 1.69859 1.45923 0.97486 1.41408 0.86923 0.80713 0.77180 0.83343 1.21522 1.23346 1.19585 1.20396 0.96545 0.85263 0.90667 1.22527 1.00005 0.95275 1.01245 1.21504 0.99513 0.92834 0.85963 1.47913 1.67035 1.11698 1.07452 1.19613 0.77285 0.81288 0.90097 1.90671 1.50187 1.64573 1.33167 1.21196 0.93690 0.84016 0.97817 0.88830 1.21858 0.93440 1.01624 0.99436 1.21498 1.01095 0.95324 0.97528 1.21885 0.94999 0.98087 1.02663 1.21561 0.96774 0.92819 0.89657 1.47007 1.48447 1.17928 1.22815 1.15958 0.79534 0.82979 0.81707 1.43175 1.59868 1.14182 1.27005 1.91178 1.62876 1.48231 1.39707 1.21762 1.00505 0.93877 0.85438 1.22347 0.99925 0.94922 1.01266 0.96814 0.93222 0.95373 0.92759 0.90972 0.90787 0.92406 0.91937 0.89736 0.90012 0.90488 0.91323 0.91018 0.90428 0.91282 0.90324 0.91031 0.77939 0.75595 0.90539 0.91513 0.90531 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.32 8.47 59.85 0.51 2.83 16 2 N -0.61 -14.28 2.45 -173.44 -0.42 -14.71 16 3 C -0.26 -7.38 9.88 -15.06 -0.15 -7.53 16 4 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 5 C 0.03 0.84 5.32 -17.43 -0.09 0.75 16 6 N -0.90 -27.82 13.97 55.49 0.78 -27.05 16 7 Si 0.89 22.77 25.04 -169.99 -4.26 18.51 16 8 H -0.29 -7.12 6.42 56.52 0.36 -6.75 16 9 H -0.31 -7.97 7.11 56.52 0.40 -7.56 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.18 3.46 2.56 -67.89 -0.17 3.29 16 12 C -0.15 -2.76 5.30 -26.61 -0.14 -2.90 16 13 C 0.12 2.12 6.44 -3.71 -0.02 2.09 16 14 N -0.61 -9.47 2.98 -173.03 -0.52 -9.99 16 15 C 0.53 8.51 4.77 -10.98 -0.05 8.46 16 16 O -0.51 -10.19 13.23 -20.07 -0.27 -10.45 16 17 C 0.14 1.61 2.94 -68.75 -0.20 1.41 16 18 H 0.09 0.92 5.28 -51.93 -0.27 0.65 16 19 C -0.12 -1.19 5.35 -26.61 -0.14 -1.34 16 20 C -0.12 -0.73 5.89 -26.68 -0.16 -0.89 16 21 C -0.14 -0.72 6.07 -26.83 -0.16 -0.88 16 22 C 0.12 0.66 6.41 -3.93 -0.03 0.64 16 23 N -0.62 -6.44 2.98 -172.48 -0.51 -6.96 16 24 C 0.70 9.09 8.17 -86.91 -0.71 8.38 16 25 N -0.87 -7.11 8.79 27.63 0.24 -6.87 16 26 O -0.55 -9.97 12.46 -20.34 -0.25 -10.23 16 27 C 0.11 1.42 6.28 -3.93 -0.02 1.40 16 28 C -0.14 -2.26 5.32 -26.83 -0.14 -2.40 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 1.20 2.77 -51.93 -0.14 1.06 16 31 H 0.03 0.56 6.48 -51.93 -0.34 0.23 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.07 1.45 7.89 -51.93 -0.41 1.04 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.08 6.75 -51.93 -0.35 0.73 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.55 7.00 -51.93 -0.36 1.19 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.28 5.56 -51.93 -0.29 -0.01 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.39 1.83 6.29 -40.82 -0.26 1.57 16 47 H 0.41 3.09 8.93 -40.82 -0.36 2.73 16 48 H 0.08 0.80 5.15 -51.93 -0.27 0.53 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -37.38 375.57 -9.37 -46.75 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.13 Total: 2.02 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: -1.69 Total: 13.30 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.44 Total: -65.57 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.52 Total: -20.68 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.26 Total: 18.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.38 -9.37 -46.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985744772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.166 kcal (2) G-P(sol) polarization free energy of solvation -37.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds