Wall clock time and date at job start Tue Mar 31 2020 20:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 120.00298 * 2 1 4 4 H 1.08001 * 120.00409 * 146.56601 * 3 2 1 5 5 C 1.38813 * 119.99761 * 326.57396 * 3 2 1 6 6 N 1.31620 * 119.99904 * 158.06682 * 5 3 2 7 7 Si 1.86794 * 119.99897 * 338.05830 * 5 3 2 8 8 H 1.48503 * 109.47045 * 90.11658 * 7 5 3 9 9 H 1.48501 * 109.47259 * 210.11495 * 7 5 3 10 10 H 1.48504 * 109.47484 * 330.11682 * 7 5 3 11 11 C 1.46504 * 119.99772 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45482 * 60.00665 * 11 2 1 13 13 C 1.53197 * 109.31301 * 178.62455 * 12 11 2 14 14 N 1.46924 * 108.77081 * 54.63221 * 13 12 11 15 15 C 1.34785 * 120.62604 * 126.37354 * 14 13 12 16 16 O 1.21279 * 119.99917 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99555 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.70471 * 350.62374 * 17 15 14 19 19 C 1.53194 * 109.58111 * 110.98307 * 17 15 14 20 20 C 1.53048 * 109.30747 * 174.41930 * 19 17 15 21 21 C 1.53042 * 109.53881 * 298.62968 * 20 19 17 22 22 C 1.52765 * 109.37990 * 61.24404 * 21 20 19 23 23 N 1.46924 * 109.58289 * 230.26617 * 17 15 14 24 24 C 1.34780 * 120.63283 * 6.58665 * 23 17 15 25 25 N 1.34778 * 120.00019 * 185.97030 * 24 23 17 26 26 O 1.21585 * 119.99951 * 5.96744 * 24 23 17 27 27 C 1.46924 * 118.74391 * 306.64076 * 14 13 12 28 28 C 1.52769 * 109.00374 * 53.31192 * 27 14 13 29 29 H 1.09000 * 109.47656 * 265.20276 * 1 2 3 30 30 H 1.09007 * 109.46912 * 25.20265 * 1 2 3 31 31 H 1.08995 * 109.47041 * 145.20020 * 1 2 3 32 32 H 0.97002 * 119.99864 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.45729 * 179.97438 * 11 2 1 34 34 H 1.09007 * 109.49628 * 58.67562 * 12 11 2 35 35 H 1.08999 * 109.50284 * 298.57816 * 12 11 2 36 36 H 1.09000 * 109.58437 * 294.84751 * 13 12 11 37 37 H 1.08991 * 109.58514 * 174.42386 * 13 12 11 38 38 H 1.09000 * 109.49533 * 294.36643 * 19 17 15 39 39 H 1.08993 * 109.50009 * 54.43818 * 19 17 15 40 40 H 1.09000 * 109.46180 * 58.65247 * 20 19 17 41 41 H 1.09005 * 109.45637 * 178.62210 * 20 19 17 42 42 H 1.09001 * 109.49626 * 181.31683 * 21 20 19 43 43 H 1.08998 * 109.49951 * 301.41788 * 21 20 19 44 44 H 1.09004 * 109.50759 * 185.70762 * 22 21 20 45 45 H 1.08999 * 109.43612 * 65.42392 * 22 21 20 46 46 H 0.97002 * 119.99609 * 355.34937 * 25 24 23 47 47 H 0.96998 * 120.00231 * 175.07723 * 25 24 23 48 48 H 1.08996 * 109.58603 * 173.14259 * 27 14 13 49 49 H 1.08998 * 109.59140 * 293.57380 * 27 14 13 50 50 H 1.08995 * 109.56143 * 185.54933 * 28 27 14 51 51 H 1.09002 * 109.38126 * 65.51338 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0957 1.2632 0.5153 5 6 1.6279 2.2886 -0.6622 6 7 2.0173 3.5010 -0.3296 7 14 0.3731 2.0517 -2.0255 8 1 -0.9947 2.0662 -1.4474 9 1 0.5038 3.1511 -3.0152 10 1 0.6124 0.7494 -2.6979 11 6 2.1975 -1.2688 0.0006 12 6 1.8276 -2.0715 -1.2489 13 6 2.6209 -3.3819 -1.2625 14 7 2.3842 -4.0910 0.0024 15 6 1.9569 -5.3693 0.0034 16 8 1.7637 -5.9449 -1.0465 17 6 1.7193 -6.0833 1.3091 18 1 2.0983 -5.4785 2.1329 19 6 0.2180 -6.3239 1.4969 20 6 -0.0057 -7.1696 2.7527 21 6 0.6837 -8.5257 2.5861 22 6 2.1858 -8.3123 2.4078 23 7 2.4079 -7.3810 1.2932 24 6 3.2234 -7.7133 0.2729 25 7 3.7536 -8.9508 0.2095 26 8 3.4808 -6.8967 -0.5903 27 6 2.6165 -3.3784 1.2661 28 6 1.8285 -2.0697 1.2513 29 1 -0.3634 -0.0859 1.0240 30 1 -0.3633 0.9299 -0.4376 31 1 -0.3633 -0.8438 -0.5865 32 1 1.6529 4.2716 -0.7927 33 1 3.2691 -1.0694 0.0000 34 1 2.0692 -1.4907 -2.1391 35 1 0.7603 -2.2924 -1.2367 36 1 3.6840 -3.1644 -1.3661 37 1 2.2895 -4.0010 -2.0961 38 1 -0.2928 -5.3673 1.6067 39 1 -0.1775 -6.8500 0.6282 40 1 0.4121 -6.6536 3.6172 41 1 -1.0747 -7.3217 2.9023 42 1 0.5042 -9.1362 3.4711 43 1 0.2838 -9.0316 1.7073 44 1 2.6654 -9.2662 2.1881 45 1 2.6037 -7.8930 3.3231 46 1 3.6032 -9.5804 0.9319 47 1 4.2822 -9.2131 -0.5604 48 1 2.2821 -3.9952 2.1002 49 1 3.6791 -3.1606 1.3729 50 1 2.0706 -1.4878 2.1405 51 1 0.7611 -2.2903 1.2403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985744772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:46 Heat of formation + Delta-G solvation = -29.775038 kcal Electronic energy + Delta-G solvation = -31890.352124 eV Core-core repulsion = 27825.702953 eV Total energy + Delta-G solvation = -4064.649172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.14083 -40.44956 -38.83318 -38.29927 -36.72556 -34.90732 -34.08972 -33.38686 -32.74196 -31.93944 -31.56963 -28.09777 -27.18721 -26.28290 -24.91206 -24.01230 -23.63761 -22.46977 -21.47406 -20.45621 -20.13858 -18.93719 -18.80771 -18.26820 -17.69777 -17.42157 -16.81219 -16.46716 -16.07606 -15.95525 -15.85395 -15.35219 -15.28233 -15.07375 -14.95210 -14.84122 -14.55814 -14.36778 -14.29051 -14.20994 -13.79623 -13.75606 -13.49909 -13.19284 -12.97134 -12.67302 -12.50370 -12.38129 -12.17278 -12.05826 -11.98553 -11.78565 -11.72766 -11.63018 -11.43397 -11.28295 -10.90787 -10.66409 -10.60312 -10.33379 -9.64527 -9.37001 -8.81890 -8.19325 -5.52857 1.27001 1.40559 1.47925 1.50516 1.97595 2.09379 2.38180 2.40610 3.06545 3.22744 3.31320 3.50877 3.69429 3.86894 3.88293 3.98789 4.08814 4.10551 4.18489 4.24615 4.32101 4.34624 4.48882 4.51981 4.59212 4.62716 4.70880 4.78792 4.80181 4.85455 4.87447 4.89975 4.97549 5.00964 5.03798 5.07688 5.12227 5.22333 5.33829 5.43421 5.45693 5.49008 5.67263 5.81681 5.92534 6.03919 6.16062 6.57149 6.95974 6.96947 7.39243 7.63963 7.75532 8.04895 9.00859 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002951 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.871790 B = 9487.104956 C = 9933.253110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.617 5.617 3 C -0.251 4.251 4 H 0.050 0.950 5 C -0.026 4.026 6 N -0.952 5.952 7 Si 0.946 3.054 8 H -0.270 1.270 9 H -0.313 1.313 10 H -0.267 1.267 11 C 0.174 3.826 12 C -0.136 4.136 13 C 0.134 3.866 14 N -0.611 5.611 15 C 0.523 3.477 16 O -0.557 6.557 17 C 0.143 3.857 18 H 0.117 0.883 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.134 4.134 22 C 0.107 3.893 23 N -0.620 5.620 24 C 0.686 3.314 25 N -0.851 5.851 26 O -0.607 6.607 27 C 0.112 3.888 28 C -0.131 4.131 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.262 0.738 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.409 0.591 47 H 0.415 0.585 48 H 0.115 0.885 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 -30.904 12.063 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.341 5.341 3 C -0.381 4.381 4 H 0.068 0.932 5 C -0.222 4.222 6 N -0.597 5.597 7 Si 0.777 3.223 8 H -0.198 1.198 9 H -0.242 1.242 10 H -0.192 1.192 11 C 0.067 3.933 12 C -0.176 4.176 13 C 0.010 3.990 14 N -0.345 5.345 15 C 0.312 3.688 16 O -0.434 6.434 17 C 0.035 3.965 18 H 0.134 0.866 19 C -0.160 4.160 20 C -0.150 4.150 21 C -0.173 4.173 22 C -0.014 4.014 23 N -0.360 5.360 24 C 0.385 3.615 25 N -0.424 5.424 26 O -0.485 6.485 27 C -0.010 4.010 28 C -0.171 4.171 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.243 0.757 47 H 0.248 0.752 48 H 0.133 0.867 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.050 -30.434 11.006 32.428 hybrid contribution -0.220 0.414 -1.373 1.451 sum -2.270 -30.019 9.634 31.609 Atomic orbital electron populations 1.21429 0.84027 0.99206 0.99368 1.44256 1.01248 1.01776 1.86799 1.18791 1.05410 0.87592 1.26311 0.93197 1.25962 1.01130 0.94932 1.00163 1.69974 1.48440 0.98311 1.42960 0.85936 0.79435 0.76642 0.80287 1.19753 1.24243 1.19209 1.20559 0.95463 0.84215 0.93015 1.22329 0.99968 0.95444 0.99872 1.21227 0.99095 0.91862 0.86833 1.48029 1.66963 1.12035 1.07463 1.20460 0.75911 0.81016 0.91387 1.90641 1.51955 1.65444 1.35331 1.21241 0.95212 0.84601 0.95399 0.86559 1.21861 0.91763 1.02189 1.00200 1.21523 1.02071 0.95343 0.96083 1.21890 0.94200 0.97798 1.03365 1.21957 0.97669 0.92989 0.88793 1.47122 1.47405 1.18208 1.23298 1.16336 0.79863 0.83608 0.81651 1.42945 1.58783 1.12988 1.27647 1.91136 1.65150 1.50220 1.42028 1.21873 1.00619 0.93003 0.85492 1.22167 1.00628 0.95406 0.98891 0.94985 0.95152 0.93210 0.92904 0.92401 0.92753 0.92509 0.91957 0.91489 0.89803 0.93283 0.89409 0.90123 0.87398 0.92821 0.88158 0.88733 0.75713 0.75221 0.86704 0.90963 0.90241 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.40 8.47 127.77 1.08 5.48 16 2 N -0.62 -28.77 2.45 -702.64 -1.72 -30.49 16 3 C -0.25 -14.23 9.88 84.03 0.83 -13.40 16 4 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 5 C -0.03 -1.54 5.32 84.86 0.45 -1.09 16 6 N -0.95 -60.04 13.97 21.65 0.30 -59.73 16 7 Si 0.95 47.58 25.04 68.60 1.72 49.29 16 8 H -0.27 -12.75 6.42 99.48 0.64 -12.11 16 9 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 11 C 0.17 6.63 2.56 45.01 0.12 6.75 16 12 C -0.14 -4.99 5.30 30.67 0.16 -4.83 16 13 C 0.13 4.61 6.44 86.36 0.56 5.17 16 14 N -0.61 -18.53 2.98 -819.73 -2.44 -20.97 16 15 C 0.52 16.46 4.77 87.66 0.42 16.88 16 16 O -0.56 -22.70 13.23 21.48 0.28 -22.42 16 17 C 0.14 2.94 2.94 44.23 0.13 3.07 16 18 H 0.12 1.80 5.28 -2.39 -0.01 1.79 16 19 C -0.12 -2.04 5.35 30.68 0.16 -1.87 16 20 C -0.11 -0.96 5.89 30.62 0.18 -0.78 16 21 C -0.13 -0.85 6.07 30.53 0.19 -0.66 16 22 C 0.11 0.78 6.41 86.22 0.55 1.33 16 23 N -0.62 -11.33 2.98 -817.88 -2.44 -13.76 16 24 C 0.69 17.09 8.17 179.05 1.46 18.55 16 25 N -0.85 -12.41 8.79 -184.74 -1.62 -14.03 16 26 O -0.61 -22.44 12.46 20.52 0.26 -22.18 16 27 C 0.11 2.68 6.28 86.22 0.54 3.22 16 28 C -0.13 -3.81 5.32 30.53 0.16 -3.65 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.42 2.77 -2.38 -0.01 1.41 16 31 H 0.05 1.88 6.48 -2.39 -0.02 1.87 16 32 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.06 2.36 7.89 -2.39 -0.02 2.34 16 34 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.06 2.08 6.75 -2.39 -0.02 2.07 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.56 7.00 -2.39 -0.02 2.55 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.10 0.27 5.56 -2.38 -0.01 0.26 16 45 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.41 2.61 6.29 -92.71 -0.58 2.03 16 47 H 0.42 5.77 8.93 -92.71 -0.83 4.94 16 48 H 0.12 1.89 5.15 -2.39 -0.01 1.88 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.07 1.86 7.72 -2.39 -0.02 1.84 16 Total: -1.00 -86.01 375.57 0.82 -85.19 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.52 Total: 14.93 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 6.99 Total: 34.18 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -7.92 Total: -138.99 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: 0.54 Total: -44.60 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.72 Total: 49.29 kcal Total: -86.01 0.82 -85.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985744772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.414 kcal (2) G-P(sol) polarization free energy of solvation -86.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds