Wall clock time and date at job start Tue Mar 31 2020 20:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 119.99470 * 2 1 4 4 H 1.07999 * 119.99685 * 203.72795 * 3 2 1 5 5 C 1.38814 * 120.00113 * 23.73768 * 3 2 1 6 6 N 1.31615 * 119.99997 * 11.43681 * 5 3 2 7 7 Si 1.86802 * 119.99536 * 191.44046 * 5 3 2 8 8 H 1.48497 * 109.47362 * 359.97438 * 7 5 3 9 9 H 1.48507 * 109.47035 * 120.00066 * 7 5 3 10 10 H 1.48503 * 109.46878 * 239.99529 * 7 5 3 11 11 C 1.46498 * 120.00339 * 179.97438 * 2 1 3 12 12 C 1.53036 * 109.46087 * 300.00220 * 11 2 1 13 13 C 1.53192 * 109.31399 * 181.38383 * 12 11 2 14 14 N 1.46925 * 108.77428 * 305.36513 * 13 12 11 15 15 C 1.34776 * 120.62981 * 233.58219 * 14 13 12 16 16 O 1.21275 * 120.00256 * 3.99632 * 15 14 13 17 17 C 1.50710 * 119.99881 * 183.99080 * 15 14 13 18 18 C 1.53042 * 109.44345 * 80.76562 * 17 15 14 19 19 C 1.53192 * 109.31050 * 181.37782 * 18 17 15 20 20 N 1.46928 * 108.77744 * 305.36773 * 19 18 17 21 21 C 1.34778 * 120.63043 * 233.58819 * 20 19 18 22 22 N 1.34772 * 119.99861 * 175.03518 * 21 20 19 23 23 O 1.21583 * 120.00050 * 355.03527 * 21 20 19 24 24 C 1.46927 * 118.73784 * 53.60176 * 20 19 18 25 25 C 1.53040 * 109.45791 * 200.82550 * 17 15 14 26 26 C 1.46922 * 118.73917 * 53.86184 * 14 13 12 27 27 C 1.53043 * 109.45918 * 60.07095 * 11 2 1 28 28 H 1.09000 * 109.47369 * 275.11094 * 1 2 3 29 29 H 1.08997 * 109.47283 * 35.11811 * 1 2 3 30 30 H 1.08999 * 109.46928 * 155.11462 * 1 2 3 31 31 H 0.97009 * 119.99770 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.45176 * 180.02562 * 11 2 1 33 33 H 1.09007 * 109.49642 * 61.43280 * 12 11 2 34 34 H 1.09005 * 109.52537 * 301.35300 * 12 11 2 35 35 H 1.09006 * 109.58881 * 185.57876 * 13 12 11 36 36 H 1.08993 * 109.70311 * 65.22268 * 13 12 11 37 37 H 1.08994 * 109.45922 * 320.80105 * 17 15 14 38 38 H 1.08997 * 109.49716 * 61.42867 * 18 17 15 39 39 H 1.08993 * 109.49976 * 301.32768 * 18 17 15 40 40 H 1.09000 * 109.59207 * 185.57927 * 19 18 17 41 41 H 1.08999 * 109.58830 * 65.14925 * 19 18 17 42 42 H 0.96999 * 120.00254 * 5.03015 * 22 21 20 43 43 H 0.97003 * 120.00027 * 185.02381 * 22 21 20 44 44 H 1.09001 * 109.58530 * 66.18665 * 24 20 19 45 45 H 1.09006 * 109.58500 * 186.46375 * 24 20 19 46 46 H 1.08991 * 109.49892 * 58.68241 * 25 17 15 47 47 H 1.08998 * 109.52433 * 298.59307 * 25 17 15 48 48 H 1.09001 * 109.58813 * 65.92361 * 26 14 13 49 49 H 1.09001 * 109.58798 * 186.34989 * 26 14 13 50 50 H 1.09007 * 109.49829 * 298.56917 * 27 11 2 51 51 H 1.08999 * 109.49799 * 58.66035 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1611 1.2256 -0.3764 5 6 1.5435 2.3373 0.4839 6 7 0.4084 2.2553 1.1451 7 14 2.3390 4.0029 0.1966 8 1 3.6000 3.8241 -0.5669 9 1 1.4109 4.8681 -0.5751 10 1 2.6384 4.6405 1.5039 11 6 2.1975 -1.2687 0.0006 12 6 1.8277 -2.0704 1.2505 13 6 2.6213 -3.3807 1.2653 14 7 2.3851 -4.0909 0.0010 15 6 1.9590 -5.3695 0.0009 16 8 1.6975 -5.9217 1.0486 17 6 1.8074 -6.1132 -1.3011 18 6 3.1753 -6.6261 -1.7572 19 6 3.0231 -7.3516 -3.0978 20 7 2.0026 -8.3990 -2.9555 21 6 2.2762 -9.6747 -3.2935 22 7 1.3664 -10.6424 -3.0648 23 8 3.3438 -9.9526 -3.8048 24 6 0.6781 -8.0293 -2.4380 25 6 0.8566 -7.2962 -1.1048 26 6 2.6281 -3.3828 -1.2632 27 6 1.8290 -2.0708 -1.2497 28 1 -0.3634 0.0915 1.0236 29 1 -0.3634 0.8406 -0.5912 30 1 -0.3633 -0.9323 -0.4324 31 1 -0.0153 3.0599 1.4829 32 1 3.2691 -1.0691 0.0009 33 1 0.7604 -2.2917 1.2382 34 1 2.0684 -1.4892 2.1407 35 1 2.2900 -3.9993 2.0994 36 1 3.6846 -3.1651 1.3701 37 1 1.4006 -5.4420 -2.0574 38 1 3.5716 -7.3166 -1.0128 39 1 3.8586 -5.7851 -1.8742 40 1 3.9742 -7.8039 -3.3787 41 1 2.7132 -6.6415 -3.8645 42 1 0.4878 -10.4115 -2.7249 43 1 1.5902 -11.5698 -3.2402 44 1 0.1771 -7.3744 -3.1509 45 1 0.0812 -8.9286 -2.2859 46 1 -0.1103 -6.9322 -0.7576 47 1 1.2743 -7.9806 -0.3664 48 1 3.6916 -3.1651 -1.3615 49 1 2.3012 -4.0027 -2.0980 50 1 0.7617 -2.2920 -1.2385 51 1 2.0711 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985784841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:43 Heat of formation + Delta-G solvation = -61.999502 kcal Electronic energy + Delta-G solvation = -30722.643296 eV Core-core repulsion = 26656.596766 eV Total energy + Delta-G solvation = -4066.046529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77151 -40.92690 -39.13373 -37.99148 -36.67834 -35.07586 -34.02665 -33.45564 -32.05652 -31.76876 -31.36280 -28.02167 -27.43879 -26.05415 -24.39857 -24.08090 -23.87066 -22.62320 -21.20381 -20.42325 -19.84378 -19.20295 -18.74513 -18.23423 -17.83913 -17.02805 -16.81628 -16.43897 -16.34687 -15.84101 -15.68414 -15.34070 -15.18085 -15.15164 -14.80805 -14.77784 -14.65029 -14.19159 -14.06927 -13.91063 -13.53985 -13.29036 -13.14632 -13.06095 -12.92317 -12.76165 -12.65339 -12.34757 -12.24924 -12.18803 -12.02741 -11.81282 -11.76298 -11.67199 -11.51571 -11.27073 -11.19752 -10.72589 -10.66782 -10.58631 -9.62938 -9.57369 -8.73564 -7.79581 -5.29026 1.46856 1.48488 1.58273 1.62638 1.83597 2.02082 2.18577 2.52032 3.24464 3.33631 3.43194 3.63776 3.70560 3.81138 3.89035 4.06022 4.12413 4.16757 4.22704 4.34432 4.37613 4.41666 4.43788 4.58674 4.63524 4.71422 4.76064 4.78507 4.85016 4.85537 4.89226 4.94162 4.97505 5.02971 5.12893 5.16079 5.27007 5.31684 5.40311 5.51493 5.53767 5.63363 5.69494 5.74978 5.88578 6.04396 6.36394 6.48602 6.92524 7.18189 7.19423 7.63750 7.91372 8.35765 9.23122 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.002237 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.465930 B =12515.171530 C =12775.483443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.612 5.612 3 C -0.255 4.255 4 H 0.074 0.926 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.263 1.263 9 H -0.294 1.294 10 H -0.297 1.297 11 C 0.172 3.828 12 C -0.130 4.130 13 C 0.123 3.877 14 N -0.605 5.605 15 C 0.515 3.485 16 O -0.589 6.589 17 C -0.100 4.100 18 C -0.114 4.114 19 C 0.132 3.868 20 N -0.627 5.627 21 C 0.701 3.299 22 N -0.852 5.852 23 O -0.645 6.645 24 C 0.115 3.885 25 C -0.113 4.113 26 C 0.113 3.887 27 C -0.136 4.136 28 H -0.004 1.004 29 H 0.012 0.988 30 H 0.028 0.972 31 H 0.245 0.755 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.410 0.590 43 H 0.419 0.581 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.118 0.882 50 H 0.054 0.946 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -22.731 -10.557 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.386 4.386 4 H 0.092 0.908 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.187 1.187 9 H -0.221 1.221 10 H -0.224 1.224 11 C 0.066 3.934 12 C -0.171 4.171 13 C -0.001 4.001 14 N -0.337 5.337 15 C 0.305 3.695 16 O -0.470 6.470 17 C -0.121 4.121 18 C -0.153 4.153 19 C 0.009 3.991 20 N -0.365 5.365 21 C 0.401 3.599 22 N -0.423 5.423 23 O -0.527 6.527 24 C -0.007 4.007 25 C -0.152 4.152 26 C -0.009 4.009 27 C -0.176 4.176 28 H 0.014 0.986 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.244 0.756 43 H 0.252 0.748 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.136 0.864 50 H 0.073 0.927 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.033 -22.882 -10.276 25.104 hybrid contribution -0.346 1.231 0.906 1.567 sum 0.687 -21.651 -9.370 23.601 Atomic orbital electron populations 1.20398 0.83349 0.95431 0.97049 1.44214 1.01794 1.01457 1.85936 1.19618 0.98856 0.86749 1.33327 0.90788 1.25826 0.98660 1.01983 0.98779 1.70248 1.20465 1.27423 1.40743 0.85202 0.78163 0.80226 0.76858 1.18697 1.22078 1.22409 1.20547 0.95429 0.84660 0.92786 1.22271 0.99259 0.95571 0.99983 1.21448 0.99875 0.92030 0.86726 1.48270 1.65489 1.11957 1.07992 1.21220 0.75178 0.81277 0.91852 1.90656 1.52206 1.68451 1.35652 1.21384 0.98736 0.97720 0.94258 1.21832 0.95174 1.00944 0.97354 1.21517 0.92188 0.88944 0.96493 1.47353 1.15145 1.06262 1.67738 1.16116 0.83576 0.81689 0.78535 1.43013 1.17304 1.09338 1.72665 1.90924 1.27177 1.82520 1.52093 1.21857 0.83085 1.01249 0.94532 1.21719 0.99668 0.96120 0.97696 1.22118 1.01054 0.92595 0.85174 1.22377 1.00170 0.96016 0.99029 0.98556 0.96941 0.95359 0.94536 0.91995 0.94019 0.93383 0.90924 0.90272 0.85854 0.92948 0.88344 0.90118 0.88692 0.75619 0.74841 0.88534 0.87898 0.89941 0.92461 0.89342 0.86397 0.92705 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.89 8.03 127.77 1.03 9.91 16 2 N -0.61 -29.13 2.81 -702.64 -1.97 -31.11 16 3 C -0.26 -13.48 9.58 84.03 0.81 -12.67 16 4 H 0.07 3.75 7.82 -2.91 -0.02 3.72 16 5 C -0.06 -3.20 5.13 84.86 0.44 -2.76 16 6 N -0.94 -55.65 10.67 21.65 0.23 -55.41 16 7 Si 0.97 44.40 29.57 68.60 2.03 46.43 16 8 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 11 C 0.17 6.26 2.55 45.02 0.11 6.38 16 12 C -0.13 -4.60 5.34 30.67 0.16 -4.44 16 13 C 0.12 3.50 6.44 86.36 0.56 4.05 16 14 N -0.61 -14.37 2.97 -818.07 -2.43 -16.79 16 15 C 0.51 12.42 6.84 87.66 0.60 13.02 16 16 O -0.59 -19.27 15.49 -3.01 -0.05 -19.31 16 17 C -0.10 -1.49 1.64 -11.51 -0.02 -1.51 16 18 C -0.11 -1.57 5.22 30.67 0.16 -1.41 16 19 C 0.13 1.74 6.42 86.36 0.55 2.29 16 20 N -0.63 -8.59 2.97 -836.90 -2.49 -11.08 16 21 C 0.70 12.84 8.57 179.06 1.53 14.37 16 22 N -0.85 -8.23 8.79 -184.75 -1.62 -9.85 16 23 O -0.64 -18.07 16.61 -3.98 -0.07 -18.13 16 24 C 0.12 0.93 6.43 86.36 0.56 1.48 16 25 C -0.11 -1.55 4.81 30.67 0.15 -1.40 16 26 C 0.11 2.07 5.78 86.51 0.50 2.57 16 27 C -0.14 -3.67 5.34 30.82 0.16 -3.50 16 28 H 0.00 -0.21 7.33 -2.39 -0.02 -0.23 16 29 H 0.01 0.64 7.35 -2.39 -0.02 0.62 16 30 H 0.03 1.17 6.47 -2.39 -0.02 1.15 16 31 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 32 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 33 H 0.04 1.59 7.72 -2.38 -0.02 1.57 16 34 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.07 2.27 7.00 -2.38 -0.02 2.26 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.12 1.25 6.32 -2.39 -0.02 1.23 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.08 7.55 -2.39 -0.02 1.07 16 40 H 0.08 1.41 7.03 -2.39 -0.02 1.39 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.41 1.48 6.29 -92.71 -0.58 0.90 16 43 H 0.42 3.31 8.93 -92.71 -0.83 2.48 16 44 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.10 0.35 5.56 -2.38 -0.01 0.34 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.06 7.94 -2.39 -0.02 1.04 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.12 1.34 5.35 -2.39 -0.01 1.33 16 50 H 0.05 1.58 6.72 -2.38 -0.02 1.56 16 51 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.11 386.01 0.48 -78.63 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -0.45 Total: 10.23 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 7.30 Total: 26.40 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -8.28 Total: -124.24 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.11 Total: -37.45 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.11 0.48 -78.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985784841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.634 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds