Wall clock time and date at job start Tue Mar 31 2020 21:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47437 * 270.00414 * 3 2 1 5 5 H 1.48500 * 109.47440 * 30.00369 * 3 2 1 6 6 H 1.48498 * 109.47576 * 150.00504 * 3 2 1 7 7 C 1.38813 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99910 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00077 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99870 * 179.97438 * 9 7 2 11 11 H 1.09005 * 108.04248 * 37.89212 * 10 9 7 12 12 C 1.51492 * 108.30664 * 280.78055 * 10 9 7 13 13 C 1.50461 * 111.08515 * 191.92052 * 12 10 9 14 14 C 1.52859 * 109.80842 * 59.08856 * 13 12 10 15 15 C 1.52903 * 109.59638 * 295.93336 * 14 13 12 16 16 H 1.09002 * 111.42274 * 289.29877 * 15 14 13 17 17 C 1.55061 * 107.37488 * 166.78083 * 15 14 13 18 18 N 1.47075 * 105.85264 * 274.23318 * 17 15 14 19 19 C 1.34776 * 125.44219 * 160.36906 * 18 17 15 20 20 O 1.21276 * 119.99828 * 175.00242 * 19 18 17 21 21 C 1.50694 * 119.99891 * 354.99754 * 19 18 17 22 22 F 1.39902 * 109.47629 * 310.16503 * 21 19 18 23 23 C 1.53008 * 109.46859 * 190.16336 * 21 19 18 24 24 C 1.53002 * 109.47043 * 180.02562 * 23 21 19 25 25 C 1.52998 * 109.47184 * 59.99952 * 24 23 21 26 26 C 1.53006 * 109.47532 * 300.00020 * 25 24 23 27 27 C 1.53002 * 109.46902 * 59.99808 * 26 25 24 28 28 C 1.47137 * 109.11280 * 340.40364 * 18 17 15 29 29 C 1.49680 * 108.30073 * 154.99728 * 10 9 7 30 30 H 1.09000 * 107.26638 * 280.75262 * 29 10 9 31 31 H 0.96998 * 119.99907 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00074 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.19749 * 311.81551 * 12 10 9 34 34 H 1.09003 * 109.18724 * 71.08206 * 12 10 9 35 35 H 1.09005 * 108.30331 * 299.43065 * 13 12 10 36 36 H 1.09008 * 109.76132 * 179.64546 * 13 12 10 37 37 H 1.09004 * 109.44268 * 175.90172 * 14 13 12 38 38 H 1.09002 * 109.44189 * 55.96403 * 14 13 12 39 39 H 1.08998 * 110.17467 * 33.32714 * 17 15 14 40 40 H 1.08997 * 110.17502 * 155.13922 * 17 15 14 41 41 H 1.09003 * 109.47121 * 299.99884 * 23 21 19 42 42 H 1.08998 * 109.46832 * 60.00742 * 23 21 19 43 43 H 1.08997 * 109.47027 * 300.00527 * 24 23 21 44 44 H 1.08996 * 109.47215 * 179.97438 * 24 23 21 45 45 H 1.09004 * 109.47543 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47316 * 60.00117 * 25 24 23 47 47 H 1.09003 * 109.46899 * 300.00352 * 26 25 24 48 48 H 1.08998 * 109.47195 * 179.97438 * 26 25 24 49 49 H 1.08996 * 109.47215 * 180.02562 * 27 26 25 50 50 H 1.08997 * 109.47027 * 59.99830 * 27 26 25 51 51 H 1.08998 * 109.97627 * 118.84835 * 28 18 17 52 52 H 1.08991 * 109.97819 * 240.09714 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5724 -3.1723 -0.6373 12 6 4.1177 -3.0171 1.4119 13 6 5.0882 -4.1590 1.5470 14 6 6.4964 -3.6876 1.1845 15 6 6.5363 -3.2759 -0.2875 16 1 6.4587 -4.1416 -0.9453 17 6 7.8600 -2.5014 -0.5159 18 7 7.5758 -1.1045 -0.1540 19 6 8.5002 -0.1738 0.1556 20 8 8.1625 0.9744 0.3517 21 6 9.9532 -0.5599 0.2582 22 9 10.0796 -1.6871 1.0772 23 6 10.7478 0.6004 0.8611 24 6 12.2232 0.2086 0.9647 25 6 12.7653 -0.1105 -0.4299 26 6 11.9707 -1.2707 -1.0330 27 6 10.4953 -0.8790 -1.1366 28 6 6.1211 -0.8857 -0.1832 29 6 5.4624 -2.2340 -0.6023 30 1 5.3352 -2.2119 -1.6846 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 -0.0014 33 1 4.4111 -2.2253 2.1012 34 1 3.1150 -3.3601 1.6673 35 1 4.7809 -4.9519 0.8650 36 1 5.0793 -4.5309 2.5717 37 1 7.2052 -4.4982 1.3540 38 1 6.7650 -2.8344 1.8074 39 1 8.6458 -2.9030 0.1239 40 1 8.1572 -2.5655 -1.5627 41 1 10.6494 1.4785 0.2230 42 1 10.3614 0.8278 1.8546 43 1 12.3219 -0.6697 1.6026 44 1 12.7894 1.0352 1.3938 45 1 13.8165 -0.3892 -0.3563 46 1 12.6666 0.7678 -1.0679 47 1 12.0695 -2.1490 -0.3950 48 1 12.3567 -1.4977 -2.0267 49 1 9.9292 -1.7056 -1.5657 50 1 10.3966 -0.0006 -1.7744 51 1 5.7686 -0.5936 0.8060 52 1 5.8755 -0.1110 -0.9095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992866379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:57 Heat of formation + Delta-G solvation = -107.622793 kcal Electronic energy + Delta-G solvation = -31973.889740 eV Core-core repulsion = 27885.944875 eV Total energy + Delta-G solvation = -4087.944865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.10687 -41.78610 -40.23272 -38.28514 -37.23062 -35.65373 -33.67338 -32.62597 -31.85676 -31.45492 -30.81353 -28.30788 -26.50417 -25.30871 -24.01630 -23.80978 -22.82162 -22.10298 -21.03880 -20.63349 -20.14429 -19.42969 -18.29775 -17.71971 -17.16328 -16.99260 -16.75937 -16.39982 -16.23837 -15.73315 -15.58785 -15.20572 -15.01118 -14.83839 -14.59564 -14.50411 -14.39120 -14.22753 -14.09666 -13.86779 -13.50022 -13.36816 -13.28858 -13.17147 -12.98818 -12.90571 -12.77939 -12.56912 -12.42025 -12.16227 -12.11401 -12.04410 -11.86824 -11.72631 -11.50914 -11.35284 -11.28593 -11.12825 -11.03660 -10.87337 -10.74435 -9.82577 -9.33429 -8.07208 -5.38324 1.18741 1.28750 1.31401 1.35974 1.65335 2.40310 2.96915 3.21159 3.25302 3.30375 3.38128 3.45149 3.57083 3.64689 3.89459 4.05543 4.09001 4.10572 4.17256 4.19956 4.22091 4.31917 4.32337 4.40398 4.43524 4.51785 4.55386 4.58919 4.71714 4.76107 4.79386 4.81246 4.87368 4.94667 4.96338 4.99161 5.07705 5.12698 5.14954 5.16865 5.24543 5.27671 5.28032 5.33657 5.39312 5.48667 5.52516 5.65080 5.77303 6.17895 6.27951 6.77286 7.03712 7.80901 7.96851 9.14660 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003541 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.840888 B = 7905.179072 C = 9074.573158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.936 3.064 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.219 4.219 8 H 0.067 0.933 9 N -0.759 5.759 10 C 0.193 3.807 11 H 0.052 0.948 12 C -0.125 4.125 13 C -0.108 4.108 14 C -0.106 4.106 15 C -0.078 4.078 16 H 0.134 0.866 17 C 0.089 3.911 18 N -0.600 5.600 19 C 0.499 3.501 20 O -0.572 6.572 21 C 0.125 3.875 22 F -0.189 7.189 23 C -0.126 4.126 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.139 4.139 28 C 0.113 3.887 29 C -0.083 4.083 30 H 0.083 0.917 31 H 0.257 0.743 32 H 0.360 0.640 33 H 0.030 0.970 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.041 0.959 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.172 -9.446 -2.612 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.248 4.248 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.350 4.350 8 H 0.085 0.915 9 N -0.403 5.403 10 C 0.086 3.914 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.146 4.146 14 C -0.143 4.143 15 C -0.097 4.097 16 H 0.152 0.848 17 C -0.032 4.032 18 N -0.332 5.332 19 C 0.287 3.713 20 O -0.452 6.452 21 C 0.104 3.896 22 F -0.170 7.170 23 C -0.164 4.164 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.176 4.176 28 C -0.010 4.010 29 C -0.103 4.103 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.193 0.807 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.103 0.897 51 H 0.060 0.940 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 30.832 -8.902 -2.499 32.188 hybrid contribution -0.956 1.848 0.482 2.136 sum 29.875 -7.054 -2.017 30.763 Atomic orbital electron populations 1.69834 1.06643 1.26353 1.60318 1.25278 0.95873 1.00250 1.03440 0.85703 0.78217 0.81458 0.78109 1.20315 1.21999 1.19647 1.19069 0.82533 0.93447 1.39918 0.91548 1.43158 1.02703 1.03978 1.90479 1.19309 0.90062 0.87036 0.94971 0.92970 1.21296 0.99124 0.98199 0.97882 1.20982 0.94280 0.97264 1.02087 1.21526 0.97165 1.00988 0.94665 1.22055 0.91165 0.97759 0.98733 0.84831 1.22995 0.99126 0.78592 1.02450 1.48452 1.05899 1.12588 1.66253 1.21351 0.88691 0.84621 0.76669 1.90720 1.82066 1.20772 1.51614 1.21085 0.89909 0.85060 0.93554 1.92834 1.96432 1.53120 1.74614 1.21938 0.96682 0.96260 1.01547 1.21547 0.92528 1.02445 0.98763 1.21623 1.00322 0.98723 0.95360 1.21523 0.91706 0.98875 1.02937 1.22252 0.99320 1.04171 0.91900 1.22095 0.80055 0.98795 1.00073 1.21400 0.94035 0.93310 1.01550 0.89872 0.93387 0.80652 0.95065 0.94021 0.90388 0.91412 0.88594 0.94300 0.87698 0.88548 0.89899 0.92168 0.91238 0.90064 0.89736 0.91532 0.90802 0.89024 0.88837 0.89729 0.94046 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 3 Si 0.94 48.69 27.73 68.60 1.90 50.59 16 4 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 6 H -0.27 -13.63 6.52 99.48 0.65 -12.98 16 7 C -0.22 -12.54 10.28 84.03 0.86 -11.68 16 8 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 9 N -0.76 -36.06 4.75 -330.39 -1.57 -37.63 16 10 C 0.19 7.02 2.56 43.43 0.11 7.13 16 11 H 0.05 1.94 8.06 -2.38 -0.02 1.92 16 12 C -0.13 -4.28 5.24 29.28 0.15 -4.13 16 13 C -0.11 -2.53 5.78 29.73 0.17 -2.36 16 14 C -0.11 -2.11 4.93 30.52 0.15 -1.96 16 15 C -0.08 -1.46 3.34 -10.15 -0.03 -1.50 16 16 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 17 C 0.09 1.57 4.80 86.98 0.42 1.99 16 18 N -0.60 -16.21 3.30 -809.13 -2.67 -18.89 16 19 C 0.50 14.67 6.86 87.66 0.60 15.27 16 20 O -0.57 -21.99 16.30 -3.02 -0.05 -22.04 16 21 C 0.13 2.57 0.75 -11.54 -0.01 2.56 16 22 F -0.19 -3.84 13.64 44.97 0.61 -3.23 16 23 C -0.13 -2.51 4.35 30.60 0.13 -2.37 16 24 C -0.12 -1.52 5.80 30.59 0.18 -1.35 16 25 C -0.12 -1.19 5.92 30.60 0.18 -1.01 16 26 C -0.11 -1.07 5.80 30.60 0.18 -0.90 16 27 C -0.14 -1.94 4.88 30.60 0.15 -1.79 16 28 C 0.11 3.78 4.95 87.23 0.43 4.21 16 29 C -0.08 -2.36 2.42 -10.92 -0.03 -2.38 16 30 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 31 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 32 H 0.36 17.27 3.71 -92.71 -0.34 16.93 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.04 0.97 7.93 -2.39 -0.02 0.95 16 39 H 0.10 1.59 5.80 -2.39 -0.01 1.58 16 40 H 0.10 1.21 7.14 -2.39 -0.02 1.20 16 41 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 0.94 7.80 -2.39 -0.02 0.92 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.07 0.71 7.80 -2.39 -0.02 0.69 16 48 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.09 1.09 5.80 -2.39 -0.01 1.07 16 50 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.04 1.64 7.58 -2.39 -0.02 1.63 16 52 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 Total: -1.00 -76.14 384.48 3.14 -73.00 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.49 Total: 25.09 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.12 Total: -3.23 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -3.94 Total: -120.18 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.61 Total: -3.23 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.90 Total: 50.59 kcal Total: -76.14 3.14 -73.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992866379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.619 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds