Wall clock time and date at job start Tue Mar 31 2020 21:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00168 * 2 1 4 4 H 1.48498 * 109.47038 * 90.00177 * 3 2 1 5 5 H 1.48496 * 109.47007 * 209.99878 * 3 2 1 6 6 H 1.48499 * 109.47138 * 330.00453 * 3 2 1 7 7 C 1.38816 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99548 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00245 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99968 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.01576 * 36.08762 * 10 9 7 12 12 C 1.52832 * 109.02772 * 277.24044 * 10 9 7 13 13 C 1.52354 * 108.24917 * 298.51434 * 12 10 9 14 14 C 1.52594 * 108.02565 * 295.25011 * 13 12 10 15 15 C 1.52999 * 111.05298 * 62.92091 * 14 13 12 16 16 H 1.09002 * 112.08075 * 73.32496 * 15 14 13 17 17 C 1.55354 * 106.97965 * 196.91667 * 15 14 13 18 18 N 1.47167 * 106.96575 * 91.81167 * 17 15 14 19 19 C 1.34773 * 125.65209 * 180.99477 * 18 17 15 20 20 O 1.21284 * 120.00199 * 175.12608 * 19 18 17 21 21 C 1.50699 * 119.99799 * 355.13114 * 19 18 17 22 22 F 1.39901 * 109.47088 * 314.43988 * 21 19 18 23 23 C 1.53006 * 109.47380 * 194.44376 * 21 19 18 24 24 C 1.52994 * 109.47208 * 179.97438 * 23 21 19 25 25 C 1.53007 * 109.46781 * 60.00388 * 24 23 21 26 26 C 1.52997 * 109.46859 * 299.99341 * 25 24 23 27 27 C 1.52995 * 109.47157 * 60.00452 * 26 25 24 28 28 C 1.47293 * 108.39375 * 0.36683 * 18 17 15 29 29 C 1.50738 * 109.02479 * 155.00824 * 10 9 7 30 30 H 1.09001 * 109.26227 * 307.52244 * 29 10 9 31 31 H 0.96998 * 119.99455 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00213 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.73422 * 57.98368 * 12 10 9 34 34 H 1.08994 * 109.73821 * 178.68543 * 12 10 9 35 35 H 1.08999 * 109.40032 * 175.90998 * 13 12 10 36 36 H 1.09004 * 110.36423 * 55.14690 * 13 12 10 37 37 H 1.08996 * 109.16255 * 302.51138 * 14 13 12 38 38 H 1.09004 * 109.11724 * 183.29586 * 14 13 12 39 39 H 1.08997 * 109.96002 * 211.19590 * 17 15 14 40 40 H 1.08998 * 109.95967 * 332.43493 * 17 15 14 41 41 H 1.08998 * 109.46649 * 299.99912 * 23 21 19 42 42 H 1.08996 * 109.46698 * 59.99607 * 23 21 19 43 43 H 1.08994 * 109.47525 * 300.00250 * 24 23 21 44 44 H 1.09002 * 109.47210 * 179.97438 * 24 23 21 45 45 H 1.09009 * 109.46846 * 179.97438 * 25 24 23 46 46 H 1.08994 * 109.47203 * 59.99666 * 25 24 23 47 47 H 1.09003 * 109.47717 * 300.00278 * 26 25 24 48 48 H 1.09005 * 109.46835 * 180.02562 * 26 25 24 49 49 H 1.09002 * 109.47481 * 179.97438 * 27 26 25 50 50 H 1.08998 * 109.47170 * 60.00044 * 27 26 25 51 51 H 1.08998 * 110.85088 * 265.38138 * 28 18 17 52 52 H 1.09004 * 109.92704 * 142.83440 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0022 11 1 3.5682 -3.1944 -0.6094 12 6 4.2040 -2.9945 1.4307 13 6 4.9741 -1.9763 2.2622 14 6 6.4010 -1.9105 1.7253 15 6 6.4214 -1.4146 0.2781 16 1 6.2140 -0.3468 0.2079 17 6 7.8105 -1.7869 -0.3095 18 7 7.6692 -3.1082 -0.9419 19 6 8.6541 -3.7963 -1.5525 20 8 8.4456 -4.9183 -1.9631 21 6 10.0146 -3.1715 -1.7249 22 9 9.8699 -1.8589 -2.1868 23 6 10.8236 -3.9827 -2.7391 24 6 12.2046 -3.3481 -2.9146 25 6 12.9356 -3.3378 -1.5705 26 6 12.1267 -2.5265 -0.5563 27 6 10.7457 -3.1611 -0.3809 28 6 6.2748 -3.5542 -0.7799 29 6 5.4761 -2.2503 -0.6046 30 1 5.3667 -1.7638 -1.5739 31 1 -0.4849 0.8401 0.0004 32 1 3.8647 -0.3622 -0.0007 33 1 3.2024 -3.1179 1.8424 34 1 4.7271 -3.9507 1.4404 35 1 4.9884 -2.2961 3.3041 36 1 4.5078 -0.9939 2.1861 37 1 6.8459 -2.9046 1.7692 38 1 6.9846 -1.2298 2.3451 39 1 8.1100 -1.0484 -1.0532 40 1 8.5517 -1.8336 0.4884 41 1 10.9363 -5.0054 -2.3793 42 1 10.3030 -3.9898 -3.6967 43 1 12.0915 -2.3255 -3.2745 44 1 12.7811 -3.9262 -3.6368 45 1 13.9197 -2.8860 -1.6956 46 1 13.0486 -4.3603 -1.2105 47 1 12.0136 -1.5039 -0.9163 48 1 12.6477 -2.5188 0.4011 49 1 10.1695 -2.5834 0.3420 50 1 10.8587 -4.1837 -0.0208 51 1 6.1699 -4.1876 0.1010 52 1 5.9482 -4.0849 -1.6743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992866382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:03 Heat of formation + Delta-G solvation = -105.178131 kcal Electronic energy + Delta-G solvation = -31757.054334 eV Core-core repulsion = 27669.215478 eV Total energy + Delta-G solvation = -4087.838857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.05401 -41.87073 -40.24225 -38.27784 -37.21322 -35.18099 -33.37498 -32.53379 -31.84328 -31.50279 -31.11014 -28.08740 -26.48450 -25.07014 -23.85779 -23.57339 -23.21500 -22.35234 -20.88783 -20.54949 -19.95160 -19.37014 -18.36425 -17.59961 -17.39544 -16.79738 -16.54841 -16.35619 -16.09336 -15.72603 -15.55684 -15.28969 -15.02483 -14.74839 -14.68860 -14.49453 -14.42581 -14.20326 -13.93972 -13.69571 -13.51731 -13.29145 -13.25528 -12.98770 -12.89259 -12.87308 -12.68266 -12.57491 -12.43533 -12.17890 -12.11135 -12.04884 -11.80288 -11.72196 -11.50451 -11.39670 -11.24341 -11.07342 -10.89965 -10.76772 -10.72174 -9.78226 -9.27728 -7.99463 -5.31863 1.23005 1.37637 1.41739 1.48760 1.68654 2.50380 2.98761 3.28381 3.31787 3.35064 3.39146 3.44590 3.59593 3.71028 3.93474 4.06889 4.10163 4.14100 4.19718 4.23121 4.26245 4.33565 4.35468 4.44280 4.44976 4.51049 4.55085 4.64848 4.70759 4.76501 4.78924 4.80422 4.85005 4.96570 4.97512 5.03047 5.08391 5.12128 5.13781 5.16908 5.22925 5.28222 5.29701 5.36284 5.44515 5.49290 5.58676 5.64511 5.81526 6.24363 6.29504 6.80016 7.11274 7.86919 8.07351 9.22525 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.002929 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.267053 B = 9555.778771 C = 9728.142803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.067 4.067 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.250 1.250 6 H -0.301 1.301 7 C -0.220 4.220 8 H 0.053 0.947 9 N -0.743 5.743 10 C 0.192 3.808 11 H 0.033 0.967 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.102 4.102 15 C -0.089 4.089 16 H 0.097 0.903 17 C 0.099 3.901 18 N -0.604 5.604 19 C 0.507 3.493 20 O -0.564 6.564 21 C 0.118 3.882 22 F -0.196 7.196 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.137 4.137 28 C 0.120 3.880 29 C -0.093 4.093 30 H 0.066 0.934 31 H 0.256 0.744 32 H 0.366 0.634 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.236 -4.913 1.339 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.174 1.174 6 H -0.228 1.228 7 C -0.352 4.352 8 H 0.071 0.929 9 N -0.386 5.386 10 C 0.084 3.916 11 H 0.052 0.948 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.139 4.139 15 C -0.108 4.108 16 H 0.115 0.885 17 C -0.023 4.023 18 N -0.336 5.336 19 C 0.295 3.705 20 O -0.443 6.443 21 C 0.097 3.903 22 F -0.176 7.176 23 C -0.162 4.162 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.175 4.175 28 C -0.003 4.003 29 C -0.113 4.113 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.103 0.897 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 30.987 -5.599 1.048 31.506 hybrid contribution -1.012 1.038 -0.409 1.506 sum 29.975 -4.561 0.639 30.327 Atomic orbital electron populations 1.69892 1.07233 1.26478 1.60266 1.25466 0.96016 1.01152 1.03113 0.85457 0.78712 0.79770 0.78176 1.20170 1.17433 1.22849 1.18979 0.82677 0.93157 1.40337 0.92854 1.42680 1.02117 1.03616 1.90223 1.19586 0.89793 0.87367 0.94833 0.94839 1.21888 0.99510 0.98639 0.96801 1.21195 0.95617 0.99229 0.98760 1.21518 0.96575 1.01976 0.93860 1.22258 0.92531 1.00334 0.95682 0.88454 1.22767 0.98285 0.83276 0.97940 1.48511 1.09723 1.20384 1.54958 1.21090 0.86440 0.85661 0.77340 1.90707 1.82454 1.20049 1.51128 1.21181 0.91659 0.78592 0.98849 1.92857 1.96539 1.37731 1.90512 1.21928 0.96619 0.99932 0.97719 1.21552 0.93662 1.01306 0.98953 1.21612 0.99117 1.01106 0.94086 1.21520 0.93269 0.99547 1.00921 1.22216 0.97963 1.04321 0.92982 1.21998 0.79949 0.96429 1.01952 1.21572 0.94146 0.95920 0.99636 0.91593 0.93546 0.80063 0.94432 0.90833 0.91447 0.93250 0.91200 0.89751 0.90198 0.88281 0.89319 0.91969 0.91717 0.89908 0.90040 0.91128 0.91402 0.89160 0.89332 0.89148 0.89704 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.42 13.97 21.65 0.30 -63.12 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.95 44.71 27.74 68.60 1.90 46.61 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 6 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.22 -12.30 10.37 84.04 0.87 -11.43 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 9 N -0.74 -32.88 3.99 -326.72 -1.30 -34.19 16 10 C 0.19 6.88 2.52 44.20 0.11 7.00 16 11 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 12 C -0.13 -4.08 5.37 30.32 0.16 -3.91 16 13 C -0.11 -3.00 5.82 30.25 0.18 -2.83 16 14 C -0.10 -2.07 4.63 30.46 0.14 -1.93 16 15 C -0.09 -2.02 3.26 -9.65 -0.03 -2.05 16 16 H 0.10 2.25 8.02 -2.39 -0.02 2.23 16 17 C 0.10 1.90 5.15 87.06 0.45 2.35 16 18 N -0.60 -14.44 3.33 -811.69 -2.70 -17.14 16 19 C 0.51 12.97 6.85 87.66 0.60 13.57 16 20 O -0.56 -18.24 16.30 -3.04 -0.05 -18.29 16 21 C 0.12 2.26 0.76 -11.54 -0.01 2.25 16 22 F -0.20 -4.06 13.73 44.97 0.62 -3.44 16 23 C -0.12 -2.19 4.40 30.59 0.13 -2.05 16 24 C -0.12 -1.45 5.80 30.59 0.18 -1.27 16 25 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 26 C -0.12 -1.11 5.80 30.59 0.18 -0.93 16 27 C -0.14 -1.79 4.91 30.59 0.15 -1.64 16 28 C 0.12 3.17 5.80 86.53 0.50 3.67 16 29 C -0.09 -2.66 2.34 -10.89 -0.03 -2.69 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.37 15.43 5.24 -92.71 -0.49 14.94 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.96 6.79 -2.39 -0.02 1.94 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.60 7.42 -2.38 -0.02 1.59 16 37 H 0.07 1.31 7.13 -2.39 -0.02 1.29 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.56 6.88 -2.39 -0.02 1.54 16 40 H 0.10 1.40 5.70 -2.39 -0.01 1.38 16 41 H 0.09 1.59 7.94 -2.39 -0.02 1.57 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 0.88 7.80 -2.39 -0.02 0.86 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.74 7.80 -2.39 -0.02 0.72 16 48 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.09 1.03 5.74 -2.39 -0.01 1.02 16 50 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.08 2.11 6.09 -2.39 -0.01 2.09 16 52 H 0.06 1.85 8.09 -2.38 -0.02 1.83 16 Total: -1.00 -70.87 381.50 3.37 -67.50 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.36 Total: 28.33 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.24 Total: -6.25 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -3.70 Total: -114.45 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.05 Total: -18.29 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.62 Total: -3.44 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -70.87 3.37 -67.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992866382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.681 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds