Wall clock time and date at job start Tue Mar 31 2020 21:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48496 * 109.47612 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47012 * 300.00142 * 3 2 1 6 6 H 1.48501 * 109.47395 * 59.99703 * 3 2 1 7 7 C 1.38815 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99924 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99675 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.93197 * 328.42937 * 10 9 7 12 12 C 1.53818 * 109.94188 * 207.26324 * 10 9 7 13 13 C 1.52520 * 111.70362 * 298.07555 * 12 10 9 14 14 C 1.53850 * 111.65704 * 305.95362 * 13 12 10 15 15 C 1.51436 * 107.03626 * 57.20366 * 14 13 12 16 16 H 1.08997 * 109.87382 * 54.18566 * 15 14 13 17 17 C 1.52331 * 117.45059 * 181.21997 * 15 14 13 18 18 N 1.48245 * 105.86710 * 145.31887 * 17 15 14 19 19 C 1.34768 * 125.78364 * 176.77981 * 18 17 15 20 20 O 1.21285 * 119.99951 * 185.17473 * 19 18 17 21 21 C 1.50701 * 120.00416 * 5.17027 * 19 18 17 22 22 F 1.39901 * 109.47269 * 310.23405 * 21 19 18 23 23 C 1.52998 * 109.47391 * 190.22821 * 21 19 18 24 24 C 1.53002 * 109.46900 * 180.02562 * 23 21 19 25 25 C 1.52996 * 109.47221 * 60.00710 * 24 23 21 26 26 C 1.53006 * 109.47132 * 299.99715 * 25 24 23 27 27 C 1.53005 * 109.46547 * 70.23203 * 21 19 18 28 28 C 1.48662 * 108.42780 * 356.81399 * 18 17 15 29 29 C 1.51618 * 110.01571 * 89.64088 * 10 9 7 30 30 H 1.08993 * 110.50820 * 174.62052 * 29 10 9 31 31 H 0.97005 * 120.00392 * 0.02562 * 1 2 3 32 32 H 0.96992 * 119.99848 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.03341 * 177.50042 * 12 10 9 34 34 H 1.09004 * 108.97459 * 58.60780 * 12 10 9 35 35 H 1.09005 * 109.04511 * 185.39955 * 13 12 10 36 36 H 1.08997 * 109.04671 * 66.51773 * 13 12 10 37 37 H 1.08992 * 109.94135 * 297.81412 * 14 13 12 38 38 H 1.09006 * 109.93809 * 176.58281 * 14 13 12 39 39 H 1.09001 * 110.17159 * 264.41700 * 17 15 14 40 40 H 1.08996 * 110.17408 * 26.21705 * 17 15 14 41 41 H 1.09000 * 109.47648 * 300.00240 * 23 21 19 42 42 H 1.09002 * 109.46695 * 60.00793 * 23 21 19 43 43 H 1.08990 * 109.47488 * 300.00103 * 24 23 21 44 44 H 1.09010 * 109.46869 * 180.02562 * 24 23 21 45 45 H 1.08999 * 109.47198 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47675 * 59.99253 * 25 24 23 47 47 H 1.08996 * 109.46782 * 300.00486 * 26 25 24 48 48 H 1.08993 * 109.47432 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47353 * 300.00121 * 27 21 19 50 50 H 1.09000 * 109.47262 * 60.00513 * 27 21 19 51 51 H 1.08999 * 110.62127 * 217.13083 * 28 18 17 52 52 H 1.08998 * 110.76153 * 94.18229 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9996 -3.5422 -0.5357 12 6 1.2068 -4.7541 -0.6596 13 6 -0.0892 -5.0006 0.1059 14 6 0.1771 -5.3028 1.5907 15 6 0.9497 -4.1271 2.1512 16 1 0.4092 -3.2011 1.9548 17 6 1.3661 -4.1940 3.6149 18 7 2.6814 -3.5148 3.6936 19 6 3.3873 -3.2923 4.8199 20 8 4.4105 -2.6425 4.7759 21 6 2.9052 -3.8506 6.1340 22 9 1.5560 -3.5262 6.3118 23 6 3.7286 -3.2510 7.2757 24 6 3.2396 -3.8184 8.6098 25 6 3.4029 -5.3396 8.6076 26 6 2.5796 -5.9394 7.4659 27 6 3.0681 -5.3719 6.1321 28 6 3.0895 -3.1202 2.3196 29 6 2.3264 -4.1011 1.4262 30 1 2.7865 -5.0891 1.4378 31 1 -0.4851 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0016 33 1 1.7822 -5.6793 -0.6918 34 1 0.9657 -4.4501 -1.6782 35 1 -0.6109 -5.8469 -0.3412 36 1 -0.7205 -4.1153 0.0308 37 1 0.7674 -6.2143 1.6845 38 1 -0.7678 -5.4143 2.1226 39 1 0.6372 -3.6747 4.2371 40 1 1.4597 -5.2326 3.9320 41 1 4.7799 -3.5038 7.1373 42 1 3.6126 -2.1672 7.2770 43 1 2.1884 -3.5661 8.7485 44 1 3.8260 -3.3909 9.4232 45 1 3.0550 -5.7438 9.5582 46 1 4.4542 -5.5921 8.4688 47 1 1.5284 -5.6869 7.6046 48 1 2.6956 -7.0231 7.4646 49 1 2.4816 -5.7991 5.3188 50 1 4.1193 -5.6247 5.9937 51 1 4.1651 -3.2392 2.1895 52 1 2.7895 -2.0940 2.1072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992866383.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:07 Heat of formation + Delta-G solvation = -104.895887 kcal Electronic energy + Delta-G solvation = -32169.807970 eV Core-core repulsion = 28081.981352 eV Total energy + Delta-G solvation = -4087.826618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.06222 -41.62399 -40.18954 -38.26656 -36.93414 -35.38788 -33.11486 -32.44339 -31.83779 -31.18165 -30.49003 -28.29109 -26.39263 -25.40863 -24.02924 -23.73496 -22.15044 -22.03885 -20.89521 -20.55064 -20.15039 -19.15734 -18.30823 -17.72267 -17.02961 -16.83626 -16.51688 -16.27364 -15.93065 -15.70412 -15.54897 -15.29861 -15.16384 -14.75658 -14.50249 -14.46102 -14.17768 -14.07074 -13.62055 -13.49829 -13.35965 -13.24879 -13.16632 -13.05542 -12.93033 -12.86560 -12.69053 -12.64319 -12.39264 -12.14240 -12.11071 -11.83375 -11.71202 -11.61392 -11.50168 -11.35945 -11.14809 -11.05681 -10.90760 -10.73234 -10.58927 -9.73717 -8.95250 -7.94340 -5.17799 1.26790 1.39552 1.43083 1.49580 1.75148 2.53628 3.01004 3.30700 3.37552 3.39937 3.53516 3.59303 3.77327 3.86362 4.04629 4.09483 4.11036 4.20366 4.28677 4.29620 4.34886 4.38657 4.43346 4.46399 4.60121 4.63041 4.65815 4.70326 4.72954 4.79425 4.83149 4.92601 4.97110 4.98536 5.07859 5.09602 5.12442 5.13602 5.16159 5.24482 5.27170 5.28783 5.40149 5.44050 5.48905 5.49357 5.55878 5.57950 5.75439 6.29649 6.38796 6.84532 7.37417 8.15922 8.38123 9.28949 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003987 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.624994 B = 7020.914894 C = 8435.561222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.303 1.303 7 C -0.218 4.218 8 H 0.068 0.932 9 N -0.722 5.722 10 C 0.178 3.822 11 H 0.045 0.955 12 C -0.114 4.114 13 C -0.112 4.112 14 C -0.088 4.088 15 C -0.100 4.100 16 H 0.058 0.942 17 C 0.113 3.887 18 N -0.607 5.607 19 C 0.498 3.502 20 O -0.575 6.575 21 C 0.119 3.881 22 F -0.198 7.198 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.133 4.133 28 C 0.114 3.886 29 C -0.108 4.108 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.377 0.623 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.058 0.942 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -19.998 13.905 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.231 1.231 7 C -0.350 4.350 8 H 0.086 0.914 9 N -0.363 5.363 10 C 0.069 3.931 11 H 0.063 0.937 12 C -0.152 4.152 13 C -0.150 4.150 14 C -0.125 4.125 15 C -0.119 4.119 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.339 5.339 19 C 0.285 3.715 20 O -0.455 6.455 21 C 0.098 3.902 22 F -0.179 7.179 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.151 4.151 27 C -0.171 4.171 28 C -0.007 4.007 29 C -0.129 4.129 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.210 0.790 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.108 0.892 51 H 0.077 0.923 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.648 -19.516 13.915 24.245 hybrid contribution -0.032 2.288 -0.402 2.323 sum 3.617 -17.229 13.513 22.192 Atomic orbital electron populations 1.69766 1.06044 1.25385 1.60262 1.25250 0.96103 1.00039 1.04786 0.85420 0.78401 0.81740 0.76420 1.19752 1.21835 1.23128 1.19478 0.90961 0.85340 1.39259 0.91387 1.42571 1.05495 1.00363 1.87826 1.20198 0.94621 0.85836 0.92455 0.93731 1.21725 0.96764 0.98095 0.98589 1.21449 0.97044 1.01070 0.95413 1.21245 1.00146 0.96276 0.94864 1.21782 0.96910 1.00844 0.92376 0.92354 1.22023 0.82831 0.97983 0.97950 1.49346 1.21362 1.56620 1.06568 1.21274 0.84050 0.80200 0.85976 1.90676 1.27186 1.41057 1.86587 1.21219 0.77866 0.99154 0.92001 1.92851 1.34625 1.94322 1.96088 1.21925 1.00201 1.00224 0.93862 1.21557 1.01858 0.96995 0.94969 1.21608 1.00954 0.93870 0.99316 1.21521 1.00247 1.01370 0.91989 1.22182 1.04354 0.89053 1.01521 1.22029 0.98452 0.99926 0.80326 1.22672 0.95250 0.98116 0.96871 0.88269 0.94365 0.78972 0.89302 0.93015 0.89860 0.94631 0.89256 0.90682 0.91649 0.88210 0.89379 0.92590 0.91818 0.89777 0.89654 0.91024 0.91460 0.88712 0.89451 0.89195 0.92330 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.95 47.92 29.55 68.60 2.03 49.95 16 4 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.30 -15.72 7.11 99.48 0.71 -15.02 16 7 C -0.22 -11.79 7.99 84.03 0.67 -11.12 16 8 H 0.07 3.66 7.82 -2.91 -0.02 3.64 16 9 N -0.72 -33.85 3.83 -323.78 -1.24 -35.09 16 10 C 0.18 6.36 3.00 44.81 0.13 6.49 16 11 H 0.04 1.67 8.07 -2.38 -0.02 1.65 16 12 C -0.11 -3.14 5.51 30.71 0.17 -2.97 16 13 C -0.11 -2.84 5.58 30.72 0.17 -2.67 16 14 C -0.09 -1.94 5.71 30.37 0.17 -1.77 16 15 C -0.10 -3.00 2.24 -10.62 -0.02 -3.03 16 16 H 0.06 2.35 6.59 -2.39 -0.02 2.34 16 17 C 0.11 3.19 5.48 85.82 0.47 3.66 16 18 N -0.61 -20.89 3.38 -812.88 -2.75 -23.64 16 19 C 0.50 17.46 6.88 87.66 0.60 18.07 16 20 O -0.57 -24.38 16.31 -3.04 -0.05 -24.43 16 21 C 0.12 3.10 0.76 -11.54 -0.01 3.10 16 22 F -0.20 -5.60 13.78 44.97 0.62 -4.99 16 23 C -0.12 -2.97 4.35 30.59 0.13 -2.84 16 24 C -0.12 -1.96 5.80 30.59 0.18 -1.78 16 25 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 26 C -0.11 -1.51 5.80 30.58 0.18 -1.33 16 27 C -0.13 -2.42 4.91 30.58 0.15 -2.27 16 28 C 0.11 4.41 6.42 85.98 0.55 4.96 16 29 C -0.11 -3.39 2.35 -10.33 -0.02 -3.41 16 30 H 0.10 2.54 8.01 -2.39 -0.02 2.52 16 31 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 32 H 0.38 19.06 6.03 -92.71 -0.56 18.50 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.03 1.13 7.03 -2.39 -0.02 1.12 16 37 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 1.98 7.01 -2.39 -0.02 1.97 16 40 H 0.10 2.08 6.09 -2.39 -0.01 2.06 16 41 H 0.09 2.09 7.99 -2.39 -0.02 2.07 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.16 7.80 -2.39 -0.02 1.14 16 44 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 0.98 7.80 -2.39 -0.02 0.96 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.09 1.48 5.82 -2.39 -0.01 1.46 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 52 H 0.06 2.72 6.04 -2.39 -0.01 2.70 16 Total: -1.00 -70.00 383.42 3.41 -66.58 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.35 Total: 31.67 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.17 Total: -1.76 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.71 Total: -117.03 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.62 Total: -4.99 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -70.00 3.41 -66.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992866383.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.311 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds