Wall clock time and date at job start Tue Mar 31 2020 21:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99589 * 2 1 4 4 H 1.48500 * 109.46843 * 240.00251 * 3 2 1 5 5 H 1.48493 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46896 * 120.00480 * 3 2 1 7 7 C 1.38807 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00619 * 163.08552 * 7 2 1 9 9 N 1.36942 * 119.99517 * 343.08150 * 7 2 1 10 10 C 1.46920 * 120.63105 * 331.82867 * 9 7 2 11 11 C 1.53194 * 108.77567 * 233.58874 * 10 9 7 12 12 C 1.53046 * 109.31317 * 305.36317 * 11 10 9 13 13 C 1.52994 * 109.46019 * 181.38660 * 12 11 10 14 14 N 1.46501 * 115.54967 * 325.55564 * 13 12 11 15 15 C 1.34777 * 120.00237 * 179.91091 * 14 13 12 16 16 O 1.21288 * 119.99625 * 359.72945 * 15 14 13 17 17 C 1.50694 * 120.00633 * 179.72812 * 15 14 13 18 18 H 1.09003 * 109.47260 * 60.00148 * 17 15 14 19 19 C 1.52995 * 109.47478 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.47101 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.46770 * 299.99312 * 20 19 17 22 22 C 1.52994 * 109.47099 * 60.00339 * 21 20 19 23 23 H 1.08997 * 109.47105 * 59.99592 * 22 21 20 24 24 F 1.39898 * 109.47120 * 179.97438 * 22 21 20 25 25 C 1.52997 * 109.47123 * 299.99965 * 22 21 20 26 26 C 1.53000 * 117.51987 * 111.26130 * 13 12 11 27 27 C 1.53001 * 60.00153 * 107.48023 * 26 13 12 28 28 C 1.53044 * 109.52345 * 61.37426 * 12 11 10 29 29 C 1.46933 * 120.62917 * 151.81227 * 9 7 2 30 30 H 0.96992 * 120.00154 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.58570 * 113.80678 * 10 9 7 32 32 H 1.09000 * 109.58923 * 353.37361 * 10 9 7 33 33 H 1.09005 * 109.49564 * 185.41637 * 11 10 9 34 34 H 1.08995 * 109.50131 * 65.31782 * 11 10 9 35 35 H 1.08998 * 109.46293 * 301.36225 * 12 11 10 36 36 H 0.96995 * 120.00258 * 359.64552 * 14 13 12 37 37 H 1.09005 * 109.46903 * 299.99622 * 19 17 15 38 38 H 1.08997 * 109.47389 * 59.99970 * 19 17 15 39 39 H 1.08997 * 109.47250 * 59.99608 * 20 19 17 40 40 H 1.09002 * 109.46943 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.46872 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47475 * 300.00158 * 21 20 19 43 43 H 1.09003 * 109.47251 * 299.99855 * 25 22 21 44 44 H 1.09003 * 109.47545 * 179.97438 * 25 22 21 45 45 H 1.09003 * 117.49749 * 214.97456 * 26 13 12 46 46 H 1.08994 * 117.49514 * 359.97438 * 26 13 12 47 47 H 1.08994 * 117.49724 * 252.51456 * 27 26 13 48 48 H 1.08999 * 117.49800 * 107.48780 * 27 26 13 49 49 H 1.09000 * 109.49896 * 58.57536 * 28 12 11 50 50 H 1.08999 * 109.49511 * 178.67375 * 28 12 11 51 51 H 1.09001 * 109.57856 * 246.19949 * 29 9 7 52 52 H 1.09003 * 109.58551 * 6.47631 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0552 -1.2222 -0.2726 9 7 1.3701 -2.3625 0.3441 10 6 0.2263 -2.3410 1.2659 11 6 0.4977 -3.3213 2.4114 12 6 0.8121 -4.7025 1.8319 13 6 1.0498 -5.6923 2.9740 14 7 1.6988 -5.1388 4.1651 15 6 1.9496 -5.9315 5.2258 16 8 1.6335 -7.1021 5.1961 17 6 2.6226 -5.3637 6.4487 18 1 2.0117 -4.5598 6.8595 19 6 2.7889 -6.4653 7.4973 20 6 3.4717 -5.8885 8.7391 21 6 4.8468 -5.3378 8.3555 22 6 4.6806 -4.2362 7.3069 23 1 4.0691 -3.4329 7.7177 24 9 5.9378 -3.7324 6.9566 25 6 3.9977 -4.8130 6.0652 26 6 0.0078 -6.7927 3.1842 27 6 1.3782 -7.1387 2.5984 28 6 2.0676 -4.6179 0.9608 29 6 1.8138 -3.6527 -0.2013 30 1 -0.4850 0.8400 0.0004 31 1 -0.6769 -2.6411 0.7346 32 1 0.0995 -1.3357 1.6676 33 1 -0.3829 -3.3868 3.0506 34 1 1.3475 -2.9704 2.9969 35 1 -0.0281 -5.0419 1.2261 36 1 1.9515 -4.2026 4.1889 37 1 1.8093 -6.8573 7.7709 38 1 3.4001 -7.2688 7.0864 39 1 2.8602 -5.0851 9.1499 40 1 3.5898 -6.6732 9.4863 41 1 5.3334 -4.9273 9.2403 42 1 5.4583 -6.1412 7.9448 43 1 4.6092 -5.6164 5.6544 44 1 3.8789 -4.0281 5.3182 45 1 -0.1950 -7.1047 4.2088 46 1 -0.8476 -6.8113 2.5090 47 1 1.4244 -7.3851 1.5377 48 1 2.0770 -7.6784 3.2376 49 1 2.9024 -4.2546 1.5601 50 1 2.3045 -5.6064 0.5674 51 1 1.0400 -4.0595 -0.8524 52 1 2.7331 -3.5123 -0.7699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000150300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:45 Heat of formation + Delta-G solvation = -78.307438 kcal Electronic energy + Delta-G solvation = -31079.147491 eV Core-core repulsion = 26992.473835 eV Total energy + Delta-G solvation = -4086.673656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.62604 -41.76977 -39.80785 -38.45625 -37.21125 -34.56695 -34.25109 -32.20556 -31.79209 -31.32626 -31.05223 -27.41207 -25.30802 -24.32454 -24.01420 -23.52007 -22.96759 -21.94025 -21.21539 -20.85749 -20.18933 -18.80649 -18.51431 -16.97335 -16.88731 -16.78373 -16.60458 -16.40880 -15.78531 -15.69559 -15.32823 -15.14501 -15.04466 -15.02566 -14.72785 -14.66935 -14.52277 -14.28365 -13.90428 -13.71115 -13.42543 -13.14156 -12.94128 -12.72855 -12.59688 -12.50896 -12.37546 -12.32423 -12.10226 -12.04647 -11.98282 -11.87680 -11.77727 -11.66269 -11.56536 -11.48860 -11.22542 -11.12171 -10.91709 -10.51586 -10.45805 -9.53656 -8.65265 -7.85687 -5.30805 1.48528 1.49992 1.54811 1.56886 2.10033 2.52818 2.97462 3.28384 3.32509 3.50182 3.54508 3.60613 3.72506 3.78807 3.86182 4.01559 4.02517 4.06110 4.14728 4.22267 4.31527 4.35378 4.40545 4.49594 4.52577 4.54525 4.56457 4.70224 4.75239 4.82583 4.88405 4.94464 4.99369 5.02280 5.05103 5.06609 5.15534 5.18378 5.21819 5.24106 5.24723 5.26842 5.36858 5.38680 5.43634 5.54142 5.64348 5.67238 5.79012 6.41341 6.55285 7.17648 7.23129 7.89132 8.40412 9.20245 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003382 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.145355 B = 8276.574785 C =10108.487219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.117 4.117 12 C -0.033 4.033 13 C 0.108 3.892 14 N -0.687 5.687 15 C 0.515 3.485 16 O -0.563 6.563 17 C -0.095 4.095 18 H 0.122 0.878 19 C -0.098 4.098 20 C -0.109 4.109 21 C -0.144 4.144 22 C 0.089 3.911 23 H 0.105 0.895 24 F -0.230 7.230 25 C -0.135 4.135 26 C -0.175 4.175 27 C -0.171 4.171 28 C -0.110 4.110 29 C 0.140 3.860 30 H 0.250 0.750 31 H -0.006 1.006 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.054 0.946 50 H 0.076 0.924 51 H 0.013 0.987 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -12.707 17.480 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.792 3.208 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.156 4.156 12 C -0.052 4.052 13 C 0.021 3.979 14 N -0.337 5.337 15 C 0.303 3.697 16 O -0.442 6.442 17 C -0.116 4.116 18 H 0.139 0.861 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.181 4.181 22 C 0.053 3.947 23 H 0.123 0.877 24 F -0.211 7.211 25 C -0.173 4.173 26 C -0.213 4.213 27 C -0.209 4.209 28 C -0.149 4.149 29 C 0.015 3.985 30 H 0.059 0.941 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.031 0.969 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.143 -13.363 17.432 22.559 hybrid contribution 0.335 1.477 -0.611 1.633 sum 5.477 -11.886 16.821 21.313 Atomic orbital electron populations 1.70169 1.06583 1.25858 1.55390 1.25739 0.95964 1.01292 1.01282 0.85407 0.77616 0.79498 0.78323 1.20409 1.22093 1.20287 1.19463 0.92769 0.86090 1.41030 0.91806 1.44310 1.35956 1.02212 1.50798 1.20571 0.87631 0.97607 0.88958 1.21973 1.00695 0.94750 0.98228 1.20615 0.98399 0.93073 0.93115 1.20707 1.00712 0.88902 0.87602 1.45496 1.60111 1.13957 1.14151 1.21018 0.78178 0.86059 0.84488 1.90642 1.53465 1.17725 1.82374 1.21282 0.96340 1.00788 0.93233 0.86057 1.21357 1.01671 0.96264 0.94282 1.21467 0.94588 1.01632 0.96914 1.22147 0.99297 0.97863 0.98841 1.21747 0.80094 0.97509 0.95302 0.87745 1.92796 1.45275 1.89300 1.93772 1.22068 0.95304 1.01590 0.98323 1.23397 0.93177 1.02025 1.02715 1.23286 0.99308 0.97025 1.01330 1.21881 0.96886 0.99089 0.97047 1.21059 0.97162 0.86128 0.94190 0.94134 0.98781 0.92722 0.91574 0.92406 0.90517 0.75151 0.91197 0.92405 0.89904 0.89649 0.89528 0.91384 0.91278 0.90302 0.88726 0.88133 0.87910 0.88938 0.92738 0.90555 0.96923 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 11.20 21.65 0.24 -54.07 16 2 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 3 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.21 9.58 84.03 0.81 -13.40 16 8 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -29.60 2.99 -699.09 -2.09 -31.70 16 10 C 0.18 8.19 5.30 86.36 0.46 8.65 16 11 C -0.12 -3.98 4.83 30.67 0.15 -3.83 16 12 C -0.03 -0.98 2.28 -10.77 -0.02 -1.01 16 13 C 0.11 2.85 2.48 3.60 0.01 2.86 16 14 N -0.69 -16.25 5.28 -422.92 -2.23 -18.48 16 15 C 0.51 11.86 6.86 87.66 0.60 12.46 16 16 O -0.56 -16.09 11.46 -3.05 -0.03 -16.12 16 17 C -0.10 -1.53 2.53 -11.54 -0.03 -1.56 16 18 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 19 C -0.10 -1.46 4.49 30.59 0.14 -1.32 16 20 C -0.11 -1.08 5.92 30.60 0.18 -0.90 16 21 C -0.14 -1.70 5.66 30.59 0.17 -1.53 16 22 C 0.09 1.33 3.87 30.59 0.12 1.45 16 23 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 24 F -0.23 -4.98 17.08 44.97 0.77 -4.21 16 25 C -0.13 -2.23 4.84 30.60 0.15 -2.08 16 26 C -0.17 -4.56 9.36 30.59 0.29 -4.27 16 27 C -0.17 -4.44 8.91 30.60 0.27 -4.16 16 28 C -0.11 -3.46 5.22 30.67 0.16 -3.30 16 29 C 0.14 5.61 6.52 86.36 0.56 6.17 16 30 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 31 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.05 2.87 6.06 -2.39 -0.01 2.86 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 34 H 0.06 1.89 6.50 -2.39 -0.02 1.87 16 35 H 0.08 2.36 7.90 -2.39 -0.02 2.34 16 36 H 0.41 9.10 6.08 -92.71 -0.56 8.53 16 37 H 0.07 1.13 8.10 -2.38 -0.02 1.11 16 38 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.37 7.56 -2.39 -0.02 1.35 16 45 H 0.09 2.71 6.36 -2.39 -0.02 2.69 16 46 H 0.10 2.41 8.05 -2.39 -0.02 2.39 16 47 H 0.10 2.42 7.60 -2.39 -0.02 2.40 16 48 H 0.09 2.66 6.39 -2.39 -0.02 2.65 16 49 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.08 2.07 7.25 -2.39 -0.02 2.05 16 51 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 Total: -1.00 -65.08 392.13 3.45 -61.64 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.34 Total: 24.77 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.43 Total: -7.94 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.08 Total: -104.25 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.03 Total: -16.12 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.77 Total: -4.21 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.08 3.45 -61.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000150300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.670 kcal (2) G-P(sol) polarization free energy of solvation -65.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds