Wall clock time and date at job start Tue Mar 31 2020 21:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 C 1.53000 * 109.46150 * 178.48896 * 12 11 10 14 14 N 1.46502 * 115.54686 * 159.48449 * 13 12 11 15 15 C 1.34775 * 119.99365 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00633 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99747 * 179.97438 * 15 14 13 18 18 H 1.08991 * 109.47254 * 300.00090 * 17 15 14 19 19 C 1.53006 * 109.46929 * 180.02562 * 17 15 14 20 20 C 1.53002 * 109.46784 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47304 * 60.00166 * 20 19 17 22 22 C 1.53006 * 109.46894 * 300.00015 * 21 20 19 23 23 H 1.08996 * 109.46842 * 299.99507 * 22 21 20 24 24 F 1.39898 * 109.46816 * 180.02562 * 22 21 20 25 25 C 1.52992 * 109.47268 * 59.99875 * 22 21 20 26 26 C 1.52999 * 117.49565 * 13.81925 * 13 12 11 27 27 C 1.52997 * 117.49622 * 305.15771 * 13 12 11 28 28 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 29 29 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 30 30 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 31 31 H 1.09000 * 109.58527 * 246.20305 * 10 9 7 32 32 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 33 33 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 34 34 H 1.08999 * 109.45583 * 174.73857 * 11 10 9 35 35 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 36 36 H 0.96991 * 120.00374 * 0.02562 * 14 13 12 37 37 H 1.08998 * 109.47510 * 299.99930 * 19 17 15 38 38 H 1.08999 * 109.47193 * 60.00311 * 19 17 15 39 39 H 1.08997 * 109.46716 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.46835 * 300.00092 * 20 19 17 41 41 H 1.09004 * 109.46911 * 59.99831 * 21 20 19 42 42 H 1.09000 * 109.47178 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47350 * 179.97438 * 25 22 21 44 44 H 1.09004 * 109.47203 * 59.99776 * 25 22 21 45 45 H 1.08997 * 117.49779 * 359.97438 * 26 13 12 46 46 H 1.08997 * 117.49671 * 145.02470 * 26 13 12 47 47 H 1.09008 * 117.49403 * 214.97493 * 27 13 12 48 48 H 1.08999 * 117.50031 * 359.97438 * 27 13 12 49 49 H 1.09002 * 109.50003 * 301.41194 * 28 12 11 50 50 H 1.09003 * 109.50168 * 181.31613 * 28 12 11 51 51 H 1.09000 * 109.58078 * 353.36597 * 29 9 7 52 52 H 1.08997 * 109.58583 * 113.65443 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 6 1.4287 -5.5113 -3.3201 14 7 2.1254 -6.7426 -2.9396 15 6 2.5013 -7.6244 -3.8871 16 8 2.2633 -7.3983 -5.0546 17 6 3.2184 -8.8908 -3.4958 18 1 4.1485 -8.6391 -2.9864 19 6 3.5299 -9.7090 -4.7506 20 6 4.2574 -10.9950 -4.3533 21 6 3.3681 -11.8157 -3.4171 22 6 3.0565 -10.9974 -2.1623 23 1 3.9864 -10.7461 -1.6523 24 9 2.2438 -11.7481 -1.3061 25 6 2.3290 -9.7115 -2.5596 26 6 1.8189 -4.8605 -4.6487 27 6 0.4742 -5.5795 -4.5139 28 6 2.1821 -4.5601 -1.1359 29 6 1.7838 -3.6581 0.0365 30 1 -0.4850 -0.8357 0.0846 31 1 -0.5660 -2.5744 -1.1451 32 1 0.3218 -1.2239 -1.8971 33 1 1.7332 -2.7951 -3.1517 34 1 0.0234 -3.1916 -3.4500 35 1 0.1369 -4.9483 -1.6909 36 1 2.3154 -6.9236 -2.0059 37 1 2.6000 -9.9607 -5.2604 38 1 4.1632 -9.1242 -5.4177 39 1 4.4798 -11.5776 -5.2472 40 1 5.1873 -10.7435 -3.8432 41 1 2.4381 -12.0670 -3.9272 42 1 3.8862 -12.7320 -3.1344 43 1 2.1067 -9.1288 -1.6657 44 1 1.3991 -9.9628 -3.0697 45 1 1.8045 -3.7718 -4.6992 46 1 2.5935 -5.3488 -5.2399 47 1 0.3649 -6.5406 -5.0166 48 1 -0.4246 -4.9641 -4.4755 49 1 3.0880 -4.1723 -1.6019 50 1 2.3642 -5.5711 -0.7715 51 1 2.6246 -3.5585 0.7230 52 1 0.9328 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000150301.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:48 Heat of formation + Delta-G solvation = -79.406634 kcal Electronic energy + Delta-G solvation = -30774.350854 eV Core-core repulsion = 26687.629533 eV Total energy + Delta-G solvation = -4086.721321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.61922 -41.86620 -40.02602 -38.53242 -37.35928 -34.73222 -34.42777 -32.12575 -31.75994 -31.29123 -31.05619 -27.27331 -25.54123 -24.37690 -23.80726 -23.57231 -23.39733 -21.96755 -21.24109 -20.82870 -20.16106 -19.34603 -18.66977 -16.99306 -16.91041 -16.83103 -16.42699 -16.24176 -15.99493 -15.79077 -15.54847 -15.30328 -15.21904 -15.06458 -14.83571 -14.72736 -14.58736 -14.33437 -13.93267 -13.71406 -13.43636 -13.38270 -12.81421 -12.76866 -12.56912 -12.44320 -12.42331 -12.32805 -12.15252 -12.05013 -11.91784 -11.86546 -11.67440 -11.59354 -11.53025 -11.51998 -11.24381 -11.22210 -10.97408 -10.50676 -10.45728 -9.61663 -8.91447 -8.22944 -5.40386 1.51870 1.58134 1.65298 1.84035 2.00976 2.65959 2.90519 3.22213 3.30276 3.49610 3.50104 3.53633 3.63473 3.69958 3.85981 3.91716 3.94660 4.05006 4.12991 4.15587 4.21097 4.30980 4.33301 4.39340 4.43738 4.52138 4.54259 4.55690 4.64814 4.71604 4.77820 4.87872 4.91695 4.97544 4.99513 5.02837 5.05436 5.10787 5.15099 5.15755 5.21231 5.22421 5.23495 5.24452 5.30807 5.42478 5.53716 5.56713 5.85829 6.40782 6.52398 7.08360 7.21213 7.79141 8.24280 9.01242 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.002458 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.983138 B =11387.734174 C =11977.325371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.076 4.076 3 Si 1.112 2.888 4 H -0.293 1.293 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.354 4.354 8 H 0.049 0.951 9 N -0.617 5.617 10 C 0.157 3.843 11 C -0.114 4.114 12 C -0.033 4.033 13 C 0.112 3.888 14 N -0.685 5.685 15 C 0.513 3.487 16 O -0.564 6.564 17 C -0.093 4.093 18 H 0.126 0.874 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.146 4.146 22 C 0.091 3.909 23 H 0.108 0.892 24 F -0.230 7.230 25 C -0.134 4.134 26 C -0.181 4.181 27 C -0.173 4.173 28 C -0.110 4.110 29 C 0.141 3.859 30 H 0.254 0.746 31 H 0.006 0.994 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.087 0.913 51 H 0.051 0.949 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -24.336 -7.415 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.272 4.272 3 Si 0.937 3.063 4 H -0.219 1.219 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.484 4.484 8 H 0.067 0.933 9 N -0.342 5.342 10 C 0.031 3.969 11 C -0.153 4.153 12 C -0.052 4.052 13 C 0.025 3.975 14 N -0.336 5.336 15 C 0.301 3.699 16 O -0.443 6.443 17 C -0.114 4.114 18 H 0.144 0.856 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.183 4.183 22 C 0.055 3.945 23 H 0.126 0.874 24 F -0.210 7.210 25 C -0.172 4.172 26 C -0.219 4.219 27 C -0.211 4.211 28 C -0.149 4.149 29 C 0.016 3.984 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.105 0.895 51 H 0.070 0.930 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.300 -22.572 -8.243 25.423 hybrid contribution -0.329 -1.368 0.613 1.534 sum 7.971 -23.939 -7.631 26.360 Atomic orbital electron populations 1.70902 1.07549 1.29432 1.50660 1.27154 0.96626 1.04797 0.98644 0.82895 0.73890 0.72288 0.77274 1.21891 1.20723 1.20094 1.20202 0.96865 0.89688 1.41598 0.93274 1.44364 1.46991 1.02344 1.40532 1.20891 0.89922 0.97745 0.88342 1.22086 1.01033 0.94608 0.97574 1.20491 0.98820 0.92799 0.93066 1.20651 0.99915 0.87419 0.89548 1.45385 1.58137 1.19078 1.10990 1.21126 0.78364 0.85145 0.85222 1.90661 1.56194 1.77567 1.19922 1.21280 1.00032 0.91255 0.98872 0.85624 1.21372 1.01085 0.96061 0.95326 1.21456 0.98456 0.94812 0.99875 1.22157 1.01497 0.99433 0.95243 1.21729 0.93185 0.89665 0.89922 0.87369 1.92798 1.76425 1.78757 1.73068 1.22078 0.98948 0.96240 0.99975 1.23432 0.99371 0.99532 0.99605 1.23333 0.93950 1.02675 1.01181 1.21849 0.97502 0.99613 0.95923 1.21065 0.97374 0.85365 0.94569 0.93593 0.97646 0.93953 0.92525 0.91223 0.90702 0.74714 0.92586 0.91516 0.89962 0.89763 0.91562 0.89551 0.89402 0.91443 0.88606 0.88818 0.88555 0.88422 0.92791 0.89480 0.93014 0.96460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 12.45 21.65 0.27 -57.23 16 2 C -0.08 -4.31 4.69 84.86 0.40 -3.91 16 3 Si 1.11 50.90 29.98 68.60 2.06 52.95 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.35 -19.63 9.48 84.03 0.80 -18.83 16 8 H 0.05 2.73 7.94 -2.91 -0.02 2.70 16 9 N -0.62 -30.27 2.83 -698.23 -1.98 -32.24 16 10 C 0.16 7.26 4.72 86.51 0.41 7.67 16 11 C -0.11 -4.04 4.02 30.82 0.12 -3.92 16 12 C -0.03 -0.96 2.45 -10.77 -0.03 -0.99 16 13 C 0.11 2.94 2.98 3.60 0.01 2.95 16 14 N -0.69 -14.16 5.28 -422.92 -2.23 -16.40 16 15 C 0.51 10.82 6.86 87.66 0.60 11.42 16 16 O -0.56 -15.91 11.46 -3.02 -0.03 -15.94 16 17 C -0.09 -1.23 2.53 -11.54 -0.03 -1.26 16 18 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 19 C -0.10 -1.35 4.49 30.60 0.14 -1.21 16 20 C -0.11 -0.89 5.92 30.59 0.18 -0.71 16 21 C -0.15 -1.37 5.66 30.60 0.17 -1.20 16 22 C 0.09 1.00 3.87 30.59 0.12 1.12 16 23 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 24 F -0.23 -3.97 17.08 44.97 0.77 -3.21 16 25 C -0.13 -1.65 4.83 30.59 0.15 -1.50 16 26 C -0.18 -5.19 8.84 30.62 0.27 -4.92 16 27 C -0.17 -4.73 9.06 30.62 0.28 -4.45 16 28 C -0.11 -3.24 5.02 30.67 0.15 -3.09 16 29 C 0.14 5.52 6.51 86.36 0.56 6.08 16 30 H 0.25 15.74 6.71 -92.71 -0.62 15.12 16 31 H 0.01 0.27 7.85 -2.39 -0.02 0.25 16 32 H 0.04 2.26 6.38 -2.39 -0.02 2.24 16 33 H 0.06 2.12 6.84 -2.39 -0.02 2.11 16 34 H 0.07 2.25 6.87 -2.39 -0.02 2.23 16 35 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.41 6.56 6.23 -92.71 -0.58 5.98 16 37 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.96 7.56 -2.39 -0.02 0.94 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 2.83 5.91 -2.39 -0.01 2.82 16 46 H 0.09 2.89 6.38 -2.39 -0.02 2.87 16 47 H 0.10 2.82 6.37 -2.38 -0.02 2.81 16 48 H 0.10 2.56 7.27 -2.39 -0.02 2.54 16 49 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 50 H 0.09 1.86 6.41 -2.39 -0.02 1.85 16 51 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 52 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -69.73 386.64 3.64 -66.09 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.48 Total: 22.72 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.31 Total: -16.74 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.94 Total: -105.86 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.03 Total: -15.94 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.77 Total: -3.21 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.95 kcal Total: -69.73 3.64 -66.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000150301.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.320 kcal (2) G-P(sol) polarization free energy of solvation -69.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds