Wall clock time and date at job start Tue Mar 31 2020 21:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47344 * 300.00090 * 3 2 1 6 6 H 1.48507 * 109.47178 * 60.00156 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00275 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.65039 * 345.37891 * 9 7 2 11 11 C 1.54907 * 104.83434 * 204.15367 * 10 9 7 12 12 C 1.55156 * 101.57795 * 322.99017 * 11 10 9 13 13 C 1.47023 * 125.64803 * 165.40662 * 9 7 2 14 14 H 1.09007 * 110.00882 * 59.42726 * 13 9 7 15 15 C 1.53003 * 109.88324 * 298.33749 * 13 9 7 16 16 C 1.53038 * 109.45065 * 183.38453 * 15 13 9 17 17 C 1.53191 * 109.31182 * 181.37718 * 16 15 13 18 18 N 1.46927 * 108.77611 * 305.36040 * 17 16 15 19 19 C 1.34766 * 120.63276 * 233.63275 * 18 17 16 20 20 O 1.21281 * 120.00242 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.00056 * 359.97438 * 19 18 17 22 22 F 1.39901 * 110.01795 * 54.30103 * 21 19 18 23 23 C 1.54266 * 110.03241 * 292.90619 * 21 19 18 24 24 C 1.54966 * 104.15883 * 217.13290 * 23 21 19 25 25 C 1.54888 * 102.77929 * 37.89175 * 24 23 21 26 26 C 1.53876 * 110.03255 * 175.69066 * 21 19 18 27 27 C 1.46934 * 118.73558 * 53.61230 * 18 17 16 28 28 C 1.53041 * 109.45560 * 303.44647 * 15 13 9 29 29 H 0.97003 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.36615 * 85.31104 * 10 9 7 31 31 H 1.09004 * 110.45676 * 323.03721 * 10 9 7 32 32 H 1.08996 * 111.00351 * 204.92106 * 11 10 9 33 33 H 1.09002 * 111.00628 * 81.05961 * 11 10 9 34 34 H 1.09006 * 110.72257 * 277.13572 * 12 11 10 35 35 H 1.09006 * 110.87201 * 153.93656 * 12 11 10 36 36 H 1.09002 * 109.45762 * 63.41356 * 15 13 9 37 37 H 1.09001 * 109.49623 * 301.32740 * 16 15 13 38 38 H 1.09000 * 109.49666 * 61.42144 * 16 15 13 39 39 H 1.09006 * 109.58205 * 185.57507 * 17 16 15 40 40 H 1.09000 * 109.70531 * 65.22269 * 17 16 15 41 41 H 1.08991 * 110.48982 * 335.78244 * 23 21 19 42 42 H 1.09007 * 110.48443 * 98.43003 * 23 21 19 43 43 H 1.09003 * 110.72528 * 279.57354 * 24 23 21 44 44 H 1.09006 * 110.75878 * 156.22387 * 24 23 21 45 45 H 1.09000 * 110.48893 * 203.40114 * 25 24 23 46 46 H 1.09006 * 110.59671 * 80.81375 * 25 24 23 47 47 H 1.09008 * 110.03585 * 238.56949 * 26 21 19 48 48 H 1.08994 * 110.03476 * 0.02562 * 26 21 19 49 49 H 1.08995 * 109.58638 * 186.60425 * 27 18 17 50 50 H 1.08999 * 109.69963 * 66.24693 * 27 18 17 51 51 H 1.09001 * 109.49754 * 298.57609 * 28 15 13 52 52 H 1.08996 * 109.50301 * 58.67631 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1081 -2.5527 0.3001 11 6 -0.2478 -4.0215 0.7723 12 6 0.7646 -4.7443 -0.1549 13 6 1.8984 -3.7080 -0.3033 14 1 2.7020 -3.9348 0.3974 15 6 2.4365 -3.7268 -1.7355 16 6 2.9535 -5.1284 -2.0673 17 6 3.5227 -5.1349 -3.4895 18 7 2.4940 -4.6370 -4.4129 19 6 2.1339 -5.3579 -5.4931 20 8 1.2831 -4.9361 -6.2475 21 6 2.7883 -6.6881 -5.7635 22 9 2.6715 -7.5161 -4.6419 23 6 4.2760 -6.4831 -6.1165 24 6 4.5560 -7.5451 -7.2097 25 6 3.2469 -7.5381 -8.0376 26 6 2.1342 -7.3588 -6.9842 27 6 1.8651 -3.3382 -4.1359 28 6 1.3145 -3.3519 -2.7064 29 1 -0.4850 0.8401 0.0004 30 1 -0.7061 -2.3836 -0.5954 31 1 -0.4116 -1.8689 1.0929 32 1 -1.2603 -4.3901 0.6078 33 1 0.0386 -4.1243 1.8190 34 1 0.3132 -4.9633 -1.1226 35 1 1.1352 -5.6572 0.3115 36 1 3.2509 -3.0081 -1.8268 37 1 3.7364 -5.4041 -1.3608 38 1 2.1339 -5.8438 -2.0001 39 1 3.8015 -6.1515 -3.7668 40 1 4.3999 -4.4896 -3.5372 41 1 4.4402 -5.4796 -6.5088 42 1 4.9032 -6.6596 -5.2426 43 1 4.7246 -8.5245 -6.7619 44 1 5.4048 -7.2500 -7.8267 45 1 3.1241 -8.4839 -8.5652 46 1 3.2431 -6.7061 -8.7418 47 1 1.7265 -8.3299 -6.7030 48 1 1.3438 -6.7221 -7.3812 49 1 1.0502 -3.1694 -4.8398 50 1 2.6043 -2.5434 -4.2352 51 1 0.5103 -4.0840 -2.6334 52 1 0.9309 -2.3631 -2.4549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004484122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:42 Heat of formation + Delta-G solvation = -83.222582 kcal Electronic energy + Delta-G solvation = -31920.495209 eV Core-core repulsion = 27833.608417 eV Total energy + Delta-G solvation = -4086.886793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.09404 -41.45151 -40.05439 -38.17318 -37.55434 -34.75891 -33.80114 -32.27607 -31.22647 -29.92932 -29.86484 -28.89539 -26.56558 -25.50717 -24.36101 -23.20408 -22.16736 -21.89461 -21.60992 -20.50785 -19.73184 -18.83289 -18.45105 -17.59329 -17.11139 -16.87406 -16.44077 -16.40024 -15.98144 -15.72622 -15.63250 -15.27820 -15.19761 -14.79028 -14.53589 -14.39902 -14.12068 -13.95757 -13.86458 -13.51083 -13.39288 -13.09923 -13.03091 -12.82220 -12.79213 -12.64471 -12.54641 -12.20758 -12.12566 -12.10706 -11.96931 -11.88720 -11.81279 -11.75734 -11.50706 -11.50289 -11.24333 -11.21202 -10.93852 -10.72141 -10.62301 -9.77815 -8.71714 -7.81116 -5.15824 1.25958 1.45329 1.46384 1.55583 1.76640 2.51863 2.98501 3.22046 3.36022 3.38110 3.57385 3.65005 3.84830 3.90277 4.02815 4.13366 4.20992 4.22067 4.24886 4.28421 4.33656 4.35949 4.36823 4.42369 4.50404 4.62702 4.65403 4.74003 4.78048 4.81933 4.87249 4.87983 4.97784 5.01883 5.08348 5.08943 5.11700 5.17088 5.17788 5.20487 5.25242 5.27902 5.38647 5.52753 5.54339 5.63891 5.68555 5.70427 5.81838 6.24560 6.30228 6.86153 7.16333 7.86104 8.54494 9.30437 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.003175 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.202820 B = 8817.641043 C = 9414.575207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.181 3.819 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.158 3.842 14 H 0.037 0.963 15 C -0.083 4.083 16 C -0.119 4.119 17 C 0.094 3.906 18 N -0.591 5.591 19 C 0.493 3.507 20 O -0.569 6.569 21 C 0.104 3.896 22 F -0.191 7.191 23 C -0.141 4.141 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.146 4.146 27 C 0.117 3.883 28 C -0.102 4.102 29 H 0.243 0.757 30 H -0.009 1.009 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.049 0.951 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 -19.195 -11.817 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.224 1.224 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.177 4.177 12 C -0.152 4.152 13 C 0.052 3.948 14 H 0.054 0.946 15 C -0.103 4.103 16 C -0.157 4.157 17 C -0.027 4.027 18 N -0.323 5.323 19 C 0.280 3.720 20 O -0.449 6.449 21 C 0.083 3.917 22 F -0.172 7.172 23 C -0.178 4.178 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.184 4.184 27 C -0.005 4.005 28 C -0.140 4.140 29 H 0.052 0.948 30 H 0.009 0.991 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.068 0.932 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.575 -18.766 -12.140 24.726 hybrid contribution -0.481 1.839 0.368 1.936 sum 10.094 -16.927 -11.772 22.956 Atomic orbital electron populations 1.70157 1.06265 1.24780 1.58522 1.25573 0.96315 1.00611 1.03087 0.85201 0.78538 0.80463 0.76342 1.18853 1.22508 1.22447 1.19265 0.90588 0.83432 1.41672 0.90510 1.44701 1.06104 1.02303 1.80107 1.21124 0.85010 0.92441 0.95905 1.22887 0.99330 0.96330 0.99196 1.22608 0.95751 0.97507 0.99376 1.21173 0.94767 0.85347 0.93497 0.94567 1.21418 0.96741 0.96607 0.95559 1.21909 1.01726 0.96080 0.96032 1.22317 0.89714 1.01895 0.88765 1.48222 1.39710 1.19915 1.24408 1.21350 0.82263 0.87513 0.80851 1.90660 1.33589 1.72318 1.48300 1.21881 0.99705 0.85246 0.84857 1.92860 1.97151 1.73065 1.54112 1.23147 0.90314 1.02045 1.02331 1.22563 0.98000 0.98821 0.95973 1.22367 0.93184 1.03279 0.96807 1.22775 1.00291 1.01547 0.93775 1.21543 0.97782 0.84324 0.96898 1.21613 0.98086 1.01163 0.93135 0.94778 0.99138 0.95341 0.90804 0.91757 0.91698 0.89245 0.92805 0.88512 0.91523 0.86921 0.89717 0.89807 0.87477 0.89592 0.88776 0.88992 0.91348 0.89094 0.90355 0.91270 0.91050 0.93209 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.99 10.57 21.65 0.23 -56.76 16 2 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 3 Si 0.96 45.68 29.55 68.60 2.03 47.71 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.22 -11.84 9.87 84.03 0.83 -11.01 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.61 -29.67 2.22 -668.26 -1.48 -31.15 16 10 C 0.18 8.89 5.41 86.86 0.47 9.36 16 11 C -0.14 -5.14 7.09 31.99 0.23 -4.91 16 12 C -0.11 -3.73 5.20 31.78 0.17 -3.57 16 13 C 0.16 5.97 2.97 45.34 0.13 6.10 16 14 H 0.04 1.35 8.14 -2.38 -0.02 1.34 16 15 C -0.08 -2.74 1.91 -10.77 -0.02 -2.77 16 16 C -0.12 -2.86 5.08 30.67 0.16 -2.71 16 17 C 0.09 2.01 5.54 86.36 0.48 2.49 16 18 N -0.59 -16.35 2.97 -818.90 -2.43 -18.78 16 19 C 0.49 14.13 6.68 87.66 0.59 14.71 16 20 O -0.57 -20.44 14.63 -3.03 -0.04 -20.48 16 21 C 0.10 2.17 1.08 -10.82 -0.01 2.16 16 22 F -0.19 -4.14 14.71 44.97 0.66 -3.47 16 23 C -0.14 -1.99 5.19 31.70 0.16 -1.82 16 24 C -0.12 -1.18 6.91 31.91 0.22 -0.96 16 25 C -0.12 -1.53 6.83 31.67 0.22 -1.31 16 26 C -0.15 -2.78 6.25 31.32 0.20 -2.59 16 27 C 0.12 3.87 6.43 86.36 0.56 4.43 16 28 C -0.10 -3.78 4.93 30.67 0.15 -3.63 16 29 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 30 H -0.01 -0.51 8.06 -2.39 -0.02 -0.53 16 31 H 0.03 1.60 6.93 -2.39 -0.02 1.58 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.13 5.50 -2.38 -0.01 2.12 16 35 H 0.09 2.34 8.14 -2.38 -0.02 2.33 16 36 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.66 7.02 -2.39 -0.02 1.64 16 39 H 0.11 1.96 3.65 -2.38 -0.01 1.95 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.27 7.85 -2.39 -0.02 1.25 16 42 H 0.11 1.16 6.92 -2.38 -0.02 1.14 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 44 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.09 1.56 8.02 -2.38 -0.02 1.54 16 48 H 0.08 1.90 6.40 -2.39 -0.02 1.89 16 49 H 0.07 2.52 7.00 -2.39 -0.02 2.50 16 50 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.05 1.89 6.20 -2.39 -0.01 1.87 16 52 H 0.05 2.38 7.49 -2.39 -0.02 2.36 16 Total: -1.00 -68.91 383.63 4.84 -64.07 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.90 Total: 17.95 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.98 Total: 0.93 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.69 Total: -106.69 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.04 Total: -20.48 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.66 Total: -3.47 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.91 4.84 -64.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004484122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.157 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds