Wall clock time and date at job start Tue Mar 31 2020 21:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00076 * 2 1 4 4 H 1.48499 * 109.47505 * 267.78226 * 3 2 1 5 5 H 1.48502 * 109.46916 * 27.78799 * 3 2 1 6 6 H 1.48501 * 109.46905 * 147.77976 * 3 2 1 7 7 C 1.38814 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00571 * 345.74939 * 7 2 1 9 9 N 1.36936 * 119.99577 * 165.74805 * 7 2 1 10 10 C 1.47431 * 125.64947 * 136.24013 * 9 7 2 11 11 C 1.54906 * 104.83234 * 204.14533 * 10 9 7 12 12 C 1.55149 * 101.58759 * 322.99526 * 11 10 9 13 13 C 1.47028 * 125.64939 * 316.26307 * 9 7 2 14 14 H 1.09004 * 110.00927 * 59.43690 * 13 9 7 15 15 C 1.52995 * 109.88502 * 298.34145 * 13 9 7 16 16 C 1.53042 * 109.46077 * 67.38982 * 15 13 9 17 17 C 1.53192 * 109.30975 * 178.61609 * 16 15 13 18 18 N 1.46929 * 108.77705 * 54.63907 * 17 16 15 19 19 C 1.34769 * 120.63027 * 126.39124 * 18 17 16 20 20 O 1.21287 * 119.99991 * 183.67662 * 19 18 17 21 21 C 1.50696 * 120.00261 * 3.67424 * 19 18 17 22 22 C 1.52998 * 112.85175 * 291.38735 * 21 19 18 23 23 F 1.39908 * 109.46819 * 295.27254 * 22 21 19 24 24 C 1.53785 * 113.61697 * 160.18620 * 21 19 18 25 25 C 1.53953 * 87.02179 * 220.04847 * 24 21 19 26 26 C 1.53776 * 87.10887 * 25.36281 * 25 24 21 27 27 C 1.46927 * 118.73424 * 306.38857 * 18 17 16 28 28 C 1.53046 * 109.45750 * 307.32132 * 15 13 9 29 29 H 0.96999 * 120.00022 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36288 * 85.31409 * 10 9 7 31 31 H 1.08999 * 110.45924 * 323.03650 * 10 9 7 32 32 H 1.08998 * 111.00444 * 204.91087 * 11 10 9 33 33 H 1.09010 * 111.00147 * 81.07113 * 11 10 9 34 34 H 1.09006 * 110.72027 * 277.13911 * 12 11 10 35 35 H 1.08997 * 110.87652 * 153.93524 * 12 11 10 36 36 H 1.09000 * 109.45016 * 187.36277 * 15 13 9 37 37 H 1.09003 * 109.49641 * 298.56619 * 16 15 13 38 38 H 1.08994 * 109.49253 * 58.66711 * 16 15 13 39 39 H 1.09002 * 109.58542 * 174.42345 * 17 16 15 40 40 H 1.09002 * 109.58896 * 294.84746 * 17 16 15 41 41 H 1.08991 * 109.47644 * 55.27215 * 22 21 19 42 42 H 1.09004 * 109.47186 * 175.27984 * 22 21 19 43 43 H 1.08996 * 113.61154 * 334.57401 * 24 21 19 44 44 H 1.09000 * 113.61314 * 105.46674 * 24 21 19 45 45 H 1.08993 * 113.53834 * 270.81220 * 25 24 21 46 46 H 1.09004 * 113.73872 * 139.93967 * 25 24 21 47 47 H 1.09001 * 113.61388 * 220.08254 * 26 25 24 48 48 H 1.09005 * 113.69127 * 89.20162 * 26 25 24 49 49 H 1.09001 * 109.58683 * 293.81829 * 27 18 17 50 50 H 1.09001 * 109.69730 * 173.46809 * 27 18 17 51 51 H 1.09000 * 109.49837 * 301.33859 * 28 15 13 52 52 H 1.09002 * 109.49551 * 61.40237 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5447 2.0193 -1.3990 5 1 1.4250 2.6657 0.6527 6 1 3.5235 1.4540 0.7465 7 6 2.0102 -1.2022 -0.0005 8 1 1.4952 -2.1232 0.2293 9 7 3.3479 -1.2203 -0.2925 10 6 4.3756 -1.9888 0.4335 11 6 5.7003 -1.2322 0.1645 12 6 5.5084 -0.7817 -1.3077 13 6 3.9975 -0.4764 -1.3817 14 1 3.8289 0.5931 -1.2552 15 6 3.4392 -0.9350 -2.7303 16 6 1.9730 -0.5120 -2.8457 17 6 1.4275 -0.9424 -4.2110 18 7 1.6544 -2.3844 -4.3777 19 6 0.6345 -3.2085 -4.6894 20 8 0.8211 -4.4049 -4.7588 21 6 -0.7376 -2.6435 -4.9516 22 6 -1.3925 -2.0660 -3.6952 23 9 -1.6207 -3.0938 -2.7739 24 6 -1.6535 -3.5919 -5.7431 25 6 -2.1448 -2.3494 -6.5080 26 6 -0.7939 -1.7000 -6.1646 27 6 3.0143 -2.9109 -4.1982 28 6 3.5421 -2.4585 -2.8331 29 1 -0.4850 0.8400 0.0004 30 1 4.4339 -3.0056 0.0451 31 1 4.1570 -2.0032 1.5013 32 1 6.5573 -1.8987 0.2607 33 1 5.8003 -0.3719 0.8265 34 1 5.7734 -1.5855 -1.9947 35 1 6.0935 0.1132 -1.5195 36 1 4.0138 -0.4771 -3.5356 37 1 1.3934 -0.9893 -2.0554 38 1 1.8982 0.5711 -2.7490 39 1 0.3590 -0.7326 -4.2602 40 1 1.9457 -0.3973 -4.9999 41 1 -0.7328 -1.3204 -3.2515 42 1 -2.3410 -1.5995 -3.9614 43 1 -1.1115 -4.3026 -6.3669 44 1 -2.4244 -4.0639 -5.1339 45 1 -2.9972 -1.8583 -6.0388 46 1 -2.2888 -2.5195 -7.5750 47 1 -0.8717 -0.6466 -5.8953 48 1 -0.0155 -1.8915 -6.9032 49 1 3.6619 -2.5264 -4.9861 50 1 2.9952 -3.9999 -4.2400 51 1 4.5840 -2.7608 -2.7275 52 1 2.9482 -2.9174 -2.0427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004551799.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:53 Heat of formation + Delta-G solvation = -52.872173 kcal Electronic energy + Delta-G solvation = -33176.844062 eV Core-core repulsion = 29091.273362 eV Total energy + Delta-G solvation = -4085.570700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.67508 -41.86677 -40.37769 -38.82104 -37.62604 -34.71591 -33.95416 -32.21107 -31.68433 -29.94199 -29.31878 -26.74576 -26.61894 -25.95794 -24.86341 -24.03788 -22.36744 -21.68032 -21.33162 -20.39563 -19.56305 -18.55577 -18.14443 -17.48505 -17.45100 -16.98577 -16.79848 -16.58558 -16.34150 -15.62907 -15.34280 -15.30358 -15.11556 -14.93201 -14.91077 -14.72602 -14.12178 -14.01524 -13.68956 -13.53311 -13.37661 -13.11682 -13.05556 -12.91791 -12.87130 -12.66454 -12.52051 -12.31676 -12.15472 -12.01129 -11.97871 -11.92359 -11.82699 -11.60483 -11.45172 -11.40330 -11.32780 -11.10364 -10.87432 -10.48601 -10.29470 -9.57515 -8.49766 -8.10825 -5.55383 1.29948 1.41596 1.51099 1.51775 2.05204 2.44719 3.15338 3.19564 3.21282 3.46790 3.55385 3.60975 3.80223 3.83221 3.93809 3.99516 4.11363 4.12631 4.17845 4.22061 4.29394 4.35685 4.41056 4.44750 4.52178 4.60638 4.63460 4.70980 4.76658 4.77389 4.81851 4.83381 4.86559 4.99019 4.99618 5.06121 5.08067 5.11070 5.12520 5.16878 5.26385 5.33295 5.39200 5.40710 5.46821 5.62596 5.64816 5.89433 6.11750 6.26751 6.41572 6.97950 7.12816 7.61705 8.34357 9.07676 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.004932 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.864964 B = 5675.924582 C = 6528.587336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.014 3.986 3 Si 0.935 3.065 4 H -0.257 1.257 5 H -0.316 1.316 6 H -0.276 1.276 7 C -0.227 4.227 8 H 0.022 0.978 9 N -0.612 5.612 10 C 0.120 3.880 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.139 3.861 14 H 0.016 0.984 15 C -0.079 4.079 16 C -0.151 4.151 17 C 0.106 3.894 18 N -0.598 5.598 19 C 0.524 3.476 20 O -0.588 6.588 21 C -0.151 4.151 22 C 0.079 3.921 23 F -0.234 7.234 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.107 4.107 27 C 0.112 3.888 28 C -0.103 4.103 29 H 0.262 0.738 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.085 0.915 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 2.074 -15.066 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.183 1.183 5 H -0.245 1.245 6 H -0.202 1.202 7 C -0.357 4.357 8 H 0.039 0.961 9 N -0.339 5.339 10 C -0.005 4.005 11 C -0.162 4.162 12 C -0.159 4.159 13 C 0.034 3.966 14 H 0.033 0.967 15 C -0.099 4.099 16 C -0.189 4.189 17 C -0.015 4.015 18 N -0.329 5.329 19 C 0.313 3.687 20 O -0.469 6.469 21 C -0.155 4.155 22 C 0.025 3.975 23 F -0.215 7.215 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.144 4.144 27 C -0.010 4.010 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.085 0.915 51 H 0.103 0.897 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.381 1.521 -15.045 15.743 hybrid contribution -0.109 0.495 1.138 1.246 sum 4.272 2.016 -13.906 14.687 Atomic orbital electron populations 1.69942 1.07089 1.27074 1.54009 1.25870 0.95296 0.99741 0.97466 0.86107 0.78165 0.80722 0.78525 1.18339 1.24549 1.20198 1.17917 0.82953 0.91394 1.43417 0.96054 1.44655 1.02721 1.55079 1.31421 1.21874 0.89089 0.94551 0.94972 1.22685 0.97009 0.99991 0.96545 1.22670 0.93644 1.02428 0.97180 1.21446 0.93002 0.93807 0.88379 0.96697 1.21358 0.95642 0.95434 0.97512 1.22336 0.98321 1.00086 0.98124 1.22120 1.02410 0.79152 0.97858 1.48133 1.08512 1.08772 1.67527 1.20757 0.86803 0.85872 0.75283 1.90600 1.84800 1.16847 1.54672 1.22898 0.92555 1.02485 0.97523 1.22163 1.03128 0.87008 0.85220 1.92747 1.96263 1.63103 1.69382 1.22833 0.97407 0.97166 0.97815 1.22885 0.96701 0.94478 1.01855 1.22976 0.99392 0.98837 0.93201 1.21682 0.82124 0.99215 0.97956 1.21677 1.00953 0.95966 0.95498 0.92821 0.95589 0.95266 0.88551 0.92535 0.89094 0.89820 0.89904 0.89518 0.93157 0.89172 0.88897 0.90478 0.86502 0.89991 0.91627 0.88202 0.88567 0.88250 0.88542 0.88876 0.91506 0.89702 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.71 13.97 21.65 0.30 -54.40 16 2 C 0.01 0.78 3.62 84.86 0.31 1.09 16 3 Si 0.93 44.41 23.66 68.60 1.62 46.03 16 4 H -0.26 -11.15 6.01 99.48 0.60 -10.55 16 5 H -0.32 -15.51 7.11 99.48 0.71 -14.81 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.23 -12.51 8.07 84.03 0.68 -11.83 16 8 H 0.02 1.41 8.06 -2.91 -0.02 1.38 16 9 N -0.61 -27.69 1.56 -668.24 -1.04 -28.74 16 10 C 0.12 4.64 7.23 86.85 0.63 5.27 16 11 C -0.12 -3.66 7.08 31.98 0.23 -3.44 16 12 C -0.12 -3.42 6.30 31.78 0.20 -3.22 16 13 C 0.14 5.21 2.09 45.34 0.09 5.30 16 14 H 0.02 0.64 3.80 -2.39 -0.01 0.63 16 15 C -0.08 -2.68 1.93 -10.77 -0.02 -2.70 16 16 C -0.15 -5.72 3.87 30.67 0.12 -5.60 16 17 C 0.11 3.15 5.19 86.36 0.45 3.60 16 18 N -0.60 -19.74 2.97 -818.91 -2.43 -22.18 16 19 C 0.52 18.99 6.59 87.66 0.58 19.56 16 20 O -0.59 -25.68 15.64 -3.05 -0.05 -25.73 16 21 C -0.15 -4.32 0.47 -52.40 -0.02 -4.35 16 22 C 0.08 2.57 6.31 71.98 0.45 3.02 16 23 F -0.23 -10.06 17.23 44.97 0.77 -9.29 16 24 C -0.11 -2.89 6.87 31.18 0.21 -2.68 16 25 C -0.12 -1.99 7.74 31.18 0.24 -1.75 16 26 C -0.11 -1.99 5.95 31.12 0.19 -1.80 16 27 C 0.11 3.48 6.43 86.36 0.56 4.04 16 28 C -0.10 -3.46 4.93 30.67 0.15 -3.30 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 2.19 6.08 -2.38 -0.01 2.18 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.09 4.23 4.63 -2.39 -0.01 4.21 16 38 H 0.05 1.97 6.26 -2.39 -0.01 1.96 16 39 H 0.09 2.52 3.16 -2.39 -0.01 2.51 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 2.79 5.58 -2.39 -0.01 2.78 16 42 H 0.12 2.84 7.31 -2.39 -0.02 2.82 16 43 H 0.08 2.22 7.77 -2.39 -0.02 2.20 16 44 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 45 H 0.10 1.37 7.61 -2.39 -0.02 1.35 16 46 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.10 1.50 7.42 -2.39 -0.02 1.48 16 48 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 49 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.07 2.32 7.01 -2.39 -0.02 2.30 16 51 H 0.08 2.42 6.34 -2.39 -0.02 2.40 16 52 H 0.03 1.51 7.33 -2.39 -0.02 1.49 16 Total: -1.00 -73.17 372.08 5.03 -68.15 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.81 Total: 24.94 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.04 Total: 1.22 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.17 Total: -105.32 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 0.77 Total: -9.29 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.62 Total: 46.03 kcal Total: -73.17 5.03 -68.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004551799.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.276 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds