Wall clock time and date at job start Tue Mar 31 2020 20:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34782 * 119.99587 * 2 1 4 4 O 1.21279 * 119.99894 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00216 * 359.97438 * 3 2 1 6 6 H 1.09003 * 109.58508 * 10.64750 * 5 3 2 7 7 C 1.53195 * 109.58553 * 250.36651 * 5 3 2 8 8 C 1.53075 * 109.29594 * 185.71685 * 7 5 3 9 9 C 1.53045 * 109.65541 * 61.15445 * 8 7 5 10 10 C 1.53190 * 109.31370 * 298.69777 * 9 8 7 11 11 N 1.46928 * 109.58844 * 130.93361 * 5 3 2 12 12 C 1.34770 * 120.63010 * 353.41558 * 11 5 3 13 13 N 1.34779 * 119.99860 * 174.73607 * 12 11 5 14 14 O 1.21587 * 119.99930 * 354.74161 * 12 11 5 15 15 C 1.46498 * 120.00454 * 179.97438 * 2 1 3 16 16 C 1.53042 * 109.45533 * 60.00320 * 15 2 1 17 17 C 1.53190 * 109.31141 * 178.61583 * 16 15 2 18 18 N 1.46922 * 108.77934 * 54.63545 * 17 16 15 19 19 C 1.36929 * 120.63459 * 126.40908 * 18 17 16 20 20 H 1.07998 * 120.00408 * 211.25694 * 19 18 17 21 21 C 1.38819 * 119.99692 * 31.26591 * 19 18 17 22 22 N 1.31618 * 119.99875 * 10.55967 * 21 19 18 23 23 Si 1.86804 * 119.99984 * 190.56722 * 21 19 18 24 24 H 1.48493 * 109.47129 * 89.99418 * 23 21 19 25 25 H 1.48496 * 109.46759 * 209.99654 * 23 21 19 26 26 H 1.48505 * 109.46882 * 329.99584 * 23 21 19 27 27 C 1.46935 * 118.73680 * 306.39330 * 18 17 16 28 28 C 1.53035 * 109.45927 * 299.93798 * 15 2 1 29 29 H 1.08993 * 109.47214 * 270.00059 * 1 2 3 30 30 H 1.09000 * 109.46660 * 30.00678 * 1 2 3 31 31 H 1.08998 * 109.46214 * 150.00185 * 1 2 3 32 32 H 1.08997 * 109.49997 * 305.52691 * 7 5 3 33 33 H 1.09003 * 109.49640 * 65.62823 * 7 5 3 34 34 H 1.08999 * 109.34873 * 301.13339 * 8 7 5 35 35 H 1.08997 * 109.44564 * 181.23712 * 8 7 5 36 36 H 1.09004 * 109.49440 * 178.75076 * 9 8 7 37 37 H 1.09001 * 109.52574 * 58.66598 * 9 8 7 38 38 H 1.09000 * 109.58593 * 294.84890 * 10 9 8 39 39 H 1.09000 * 109.59091 * 174.42501 * 10 9 8 40 40 H 0.96996 * 120.00086 * 5.00897 * 13 12 11 41 41 H 0.97000 * 119.99708 * 184.99830 * 13 12 11 42 42 H 1.09000 * 109.44780 * 179.97438 * 15 2 1 43 43 H 1.09005 * 109.49636 * 58.66788 * 16 15 2 44 44 H 1.09002 * 109.49968 * 298.56615 * 16 15 2 45 45 H 1.08996 * 109.58783 * 174.42529 * 17 16 15 46 46 H 1.09006 * 109.58661 * 294.70793 * 17 16 15 47 47 H 0.97007 * 119.99559 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.58391 * 173.39333 * 27 18 17 49 49 H 1.08993 * 109.58423 * 293.82053 * 27 18 17 50 50 H 1.08998 * 109.50028 * 61.43043 * 28 15 2 51 51 H 1.09004 * 109.49992 * 301.33160 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1674 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.3285 2.2841 0.1888 7 6 1.5491 3.1592 -1.3601 8 6 0.9029 4.5459 -1.3073 9 6 1.6000 5.3986 -0.2446 10 6 1.4339 4.7354 1.1262 11 7 1.9241 3.3526 1.0452 12 6 2.8505 2.9005 1.9133 13 7 3.4136 3.7462 2.7989 14 8 3.1784 1.7298 1.8974 15 6 2.1976 -1.2687 0.0006 16 6 1.8278 -2.0714 -1.2488 17 6 2.6214 -3.3816 -1.2625 18 7 2.3852 -4.0909 0.0023 19 6 1.9522 -5.3900 0.0034 20 1 1.3213 -5.7483 0.8034 21 6 2.3243 -6.2464 -1.0237 22 7 3.2526 -5.8805 -1.8819 23 14 1.5072 -7.9183 -1.1880 24 1 0.3078 -7.8000 -2.0554 25 1 2.4636 -8.8791 -1.7939 26 1 1.1008 -8.4046 0.1550 27 6 2.6227 -3.3799 1.2660 28 6 1.8290 -2.0697 1.2513 29 1 -0.3633 0.0000 1.0276 30 1 -0.3632 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 2.6095 3.2627 -1.5901 33 1 1.0658 2.5594 -2.1313 34 1 -0.1526 4.4431 -1.0553 35 1 0.9986 5.0282 -2.2800 36 1 1.1526 6.3924 -0.2246 37 1 2.6605 5.4817 -0.4824 38 1 0.3804 4.7338 1.4061 39 1 2.0109 5.2846 1.8703 40 1 3.1010 4.6622 2.8610 41 1 4.1315 3.4385 3.3742 42 1 3.2692 -1.0690 0.0000 43 1 2.0691 -1.4906 -2.1391 44 1 0.7605 -2.2927 -1.2364 45 1 2.2902 -4.0008 -2.0961 46 1 3.6842 -3.1640 -1.3687 47 1 3.5124 -6.4789 -2.5999 48 1 2.2922 -3.9981 2.1007 49 1 3.6857 -3.1620 1.3684 50 1 0.7617 -2.2910 1.2402 51 1 2.0711 -1.4877 2.1406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006278576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:10 Heat of formation + Delta-G solvation = -11.067733 kcal Electronic energy + Delta-G solvation = -31875.439698 eV Core-core repulsion = 27811.601736 eV Total energy + Delta-G solvation = -4063.837962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07714 -39.02975 -37.56920 -36.99658 -34.85220 -33.90509 -32.69827 -32.35587 -31.33687 -29.99922 -29.39652 -26.65000 -26.11517 -24.88289 -23.94437 -22.05155 -22.00611 -21.56175 -20.03749 -19.35573 -18.73416 -17.90354 -17.20373 -16.74113 -16.48648 -15.71200 -15.42184 -15.14421 -14.90567 -14.78783 -14.56723 -14.27718 -13.85336 -13.58986 -13.51745 -13.44468 -13.36203 -12.97972 -12.81166 -12.41190 -12.27983 -12.25131 -12.08718 -11.67016 -11.46099 -11.32557 -11.22742 -11.04616 -10.95259 -10.69229 -10.65716 -10.17288 -10.06461 -9.98423 -9.80104 -9.72492 -9.47826 -9.40040 -9.04773 -8.75715 -8.42075 -7.89608 -6.52953 -5.69927 -3.17524 2.41641 3.08488 3.33622 3.42131 3.48051 3.49316 3.49906 3.99650 4.37252 4.42560 4.51496 4.55283 4.70776 4.81849 4.86069 5.05174 5.09248 5.27410 5.36947 5.45775 5.46967 5.50156 5.54798 5.59992 5.64871 5.69285 5.71763 5.85017 5.88290 6.00048 6.09815 6.17805 6.27029 6.42565 6.53846 6.57682 6.71552 6.79027 6.82190 6.87847 6.94175 7.12242 7.20199 7.48862 7.76784 7.77536 7.85808 7.92147 8.56245 8.58430 8.84741 9.31046 9.92778 10.52188 11.38163 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002793 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.505051 B =10021.809973 C =10524.625344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.524 3.476 4 O -0.502 6.502 5 C 0.142 3.858 6 H 0.089 0.911 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.138 4.138 10 C 0.116 3.884 11 N -0.621 5.621 12 C 0.695 3.305 13 N -0.872 5.872 14 O -0.539 6.539 15 C 0.155 3.845 16 C -0.146 4.146 17 C 0.175 3.825 18 N -0.593 5.593 19 C -0.250 4.250 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.148 3.852 28 C -0.134 4.134 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.389 0.611 41 H 0.412 0.588 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.054 0.946 49 H 0.019 0.981 50 H 0.055 0.945 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 27.157 4.368 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C 0.310 3.690 4 O -0.375 6.375 5 C 0.035 3.965 6 H 0.107 0.893 7 C -0.164 4.164 8 C -0.154 4.154 9 C -0.176 4.176 10 C -0.008 4.008 11 N -0.363 5.363 12 C 0.395 3.605 13 N -0.443 5.443 14 O -0.412 6.412 15 C 0.053 3.947 16 C -0.186 4.186 17 C 0.049 3.951 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.550 5.550 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.021 3.979 28 C -0.174 4.174 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.244 0.756 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.074 0.926 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.086 26.187 4.107 27.438 hybrid contribution -0.410 -0.334 0.197 0.564 sum -7.495 25.853 4.304 27.260 Atomic orbital electron populations 1.21726 0.81054 1.02613 1.01260 1.47907 1.06123 1.06176 1.74163 1.19666 0.88015 0.84319 0.77007 1.90693 1.13816 1.86380 1.46630 1.21133 0.97845 0.89289 0.88254 0.89313 1.21863 1.03061 0.96374 0.95088 1.21494 0.99625 0.94955 0.99296 1.21953 1.01952 0.98895 0.94797 1.21629 0.99749 0.81599 0.97799 1.46975 1.44334 1.12381 1.32581 1.15996 0.79297 0.85383 0.79827 1.43191 1.43262 1.14661 1.43211 1.91241 1.64184 1.14716 1.71088 1.21028 0.97290 0.80743 0.95646 1.22588 1.01341 0.99039 0.95645 1.20750 0.95249 0.88628 0.90476 1.44057 1.77830 1.10213 0.99489 1.19191 1.23501 0.86139 1.09129 0.91839 1.25177 0.96961 0.97681 0.99802 1.69986 1.30459 1.36527 1.17993 0.86256 0.78528 0.83966 0.77781 1.21512 1.21743 1.20474 1.20879 0.95870 0.90983 0.90131 1.22304 1.00754 0.97791 0.96575 0.93278 0.91958 0.90447 0.90417 0.90128 0.91509 0.91095 0.90546 0.91207 0.91186 0.90332 0.78080 0.75575 0.88912 0.93315 0.92638 0.89146 0.96311 0.93653 0.92722 0.96273 0.92591 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.03 59.85 0.54 1.51 16 2 N -0.61 -10.27 2.76 -173.89 -0.48 -10.75 16 3 C 0.52 9.02 4.83 -10.99 -0.05 8.97 16 4 O -0.50 -10.89 12.99 -20.18 -0.26 -11.15 16 5 C 0.14 1.71 2.78 -68.75 -0.19 1.52 16 6 H 0.09 0.89 5.69 -51.93 -0.30 0.60 16 7 C -0.13 -1.22 5.36 -26.59 -0.14 -1.36 16 8 C -0.12 -0.73 5.88 -26.67 -0.16 -0.89 16 9 C -0.14 -0.76 6.08 -26.61 -0.16 -0.92 16 10 C 0.12 0.72 6.43 -3.71 -0.02 0.69 16 11 N -0.62 -6.88 2.97 -172.23 -0.51 -7.40 16 12 C 0.70 9.78 8.18 -86.92 -0.71 9.07 16 13 N -0.87 -8.00 8.79 27.63 0.24 -7.76 16 14 O -0.54 -10.65 12.37 -20.45 -0.25 -10.90 16 15 C 0.15 3.12 2.48 -67.89 -0.17 2.95 16 16 C -0.15 -3.02 5.31 -26.61 -0.14 -3.16 16 17 C 0.18 4.44 5.25 -3.71 -0.02 4.42 16 18 N -0.59 -15.67 2.99 -172.32 -0.51 -16.18 16 19 C -0.25 -7.07 9.58 -15.06 -0.14 -7.21 16 20 H 0.06 1.76 7.85 -52.49 -0.41 1.35 16 21 C 0.00 0.06 5.05 -17.43 -0.09 -0.03 16 22 N -0.91 -27.01 11.04 55.49 0.61 -26.40 16 23 Si 0.90 22.15 29.57 -169.99 -5.03 17.12 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.15 3.44 6.52 -3.70 -0.02 3.41 16 28 C -0.13 -2.70 5.34 -26.61 -0.14 -2.84 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.59 6.14 -51.93 -0.32 0.27 16 31 H 0.08 1.00 6.45 -51.93 -0.34 0.67 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.33 5.56 -51.93 -0.29 0.04 16 40 H 0.39 2.14 6.29 -40.82 -0.26 1.89 16 41 H 0.41 3.58 8.93 -40.82 -0.36 3.21 16 42 H 0.09 2.19 6.90 -51.93 -0.36 1.83 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.11 6.72 -51.93 -0.35 0.76 16 45 H 0.09 2.51 6.09 -51.93 -0.32 2.19 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.05 1.22 7.93 -51.93 -0.41 0.81 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 51 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -37.57 381.20 -10.39 -47.96 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.32 Total: 3.58 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: -1.63 Total: 16.13 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.65 Total: -68.49 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.52 Total: -22.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.57 -10.39 -47.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006278576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.895 kcal (2) G-P(sol) polarization free energy of solvation -37.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds