Wall clock time and date at job start Tue Mar 31 2020 20:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34782 * 119.99587 * 2 1 4 4 O 1.21279 * 119.99894 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00216 * 359.97438 * 3 2 1 6 6 H 1.09003 * 109.58508 * 10.64750 * 5 3 2 7 7 C 1.53195 * 109.58553 * 250.36651 * 5 3 2 8 8 C 1.53075 * 109.29594 * 185.71685 * 7 5 3 9 9 C 1.53045 * 109.65541 * 61.15445 * 8 7 5 10 10 C 1.53190 * 109.31370 * 298.69777 * 9 8 7 11 11 N 1.46928 * 109.58844 * 130.93361 * 5 3 2 12 12 C 1.34770 * 120.63010 * 353.41558 * 11 5 3 13 13 N 1.34779 * 119.99860 * 174.73607 * 12 11 5 14 14 O 1.21587 * 119.99930 * 354.74161 * 12 11 5 15 15 C 1.46498 * 120.00454 * 179.97438 * 2 1 3 16 16 C 1.53042 * 109.45533 * 60.00320 * 15 2 1 17 17 C 1.53190 * 109.31141 * 178.61583 * 16 15 2 18 18 N 1.46922 * 108.77934 * 54.63545 * 17 16 15 19 19 C 1.36929 * 120.63459 * 126.40908 * 18 17 16 20 20 H 1.07998 * 120.00408 * 211.25694 * 19 18 17 21 21 C 1.38819 * 119.99692 * 31.26591 * 19 18 17 22 22 N 1.31618 * 119.99875 * 10.55967 * 21 19 18 23 23 Si 1.86804 * 119.99984 * 190.56722 * 21 19 18 24 24 H 1.48493 * 109.47129 * 89.99418 * 23 21 19 25 25 H 1.48496 * 109.46759 * 209.99654 * 23 21 19 26 26 H 1.48505 * 109.46882 * 329.99584 * 23 21 19 27 27 C 1.46935 * 118.73680 * 306.39330 * 18 17 16 28 28 C 1.53035 * 109.45927 * 299.93798 * 15 2 1 29 29 H 1.08993 * 109.47214 * 270.00059 * 1 2 3 30 30 H 1.09000 * 109.46660 * 30.00678 * 1 2 3 31 31 H 1.08998 * 109.46214 * 150.00185 * 1 2 3 32 32 H 1.08997 * 109.49997 * 305.52691 * 7 5 3 33 33 H 1.09003 * 109.49640 * 65.62823 * 7 5 3 34 34 H 1.08999 * 109.34873 * 301.13339 * 8 7 5 35 35 H 1.08997 * 109.44564 * 181.23712 * 8 7 5 36 36 H 1.09004 * 109.49440 * 178.75076 * 9 8 7 37 37 H 1.09001 * 109.52574 * 58.66598 * 9 8 7 38 38 H 1.09000 * 109.58593 * 294.84890 * 10 9 8 39 39 H 1.09000 * 109.59091 * 174.42501 * 10 9 8 40 40 H 0.96996 * 120.00086 * 5.00897 * 13 12 11 41 41 H 0.97000 * 119.99708 * 184.99830 * 13 12 11 42 42 H 1.09000 * 109.44780 * 179.97438 * 15 2 1 43 43 H 1.09005 * 109.49636 * 58.66788 * 16 15 2 44 44 H 1.09002 * 109.49968 * 298.56615 * 16 15 2 45 45 H 1.08996 * 109.58783 * 174.42529 * 17 16 15 46 46 H 1.09006 * 109.58661 * 294.70793 * 17 16 15 47 47 H 0.97007 * 119.99559 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.58391 * 173.39333 * 27 18 17 49 49 H 1.08993 * 109.58423 * 293.82053 * 27 18 17 50 50 H 1.08998 * 109.50028 * 61.43043 * 28 15 2 51 51 H 1.09004 * 109.49992 * 301.33160 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1674 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.3285 2.2841 0.1888 7 6 1.5491 3.1592 -1.3601 8 6 0.9029 4.5459 -1.3073 9 6 1.6000 5.3986 -0.2446 10 6 1.4339 4.7354 1.1262 11 7 1.9241 3.3526 1.0452 12 6 2.8505 2.9005 1.9133 13 7 3.4136 3.7462 2.7989 14 8 3.1784 1.7298 1.8974 15 6 2.1976 -1.2687 0.0006 16 6 1.8278 -2.0714 -1.2488 17 6 2.6214 -3.3816 -1.2625 18 7 2.3852 -4.0909 0.0023 19 6 1.9522 -5.3900 0.0034 20 1 1.3213 -5.7483 0.8034 21 6 2.3243 -6.2464 -1.0237 22 7 3.2526 -5.8805 -1.8819 23 14 1.5072 -7.9183 -1.1880 24 1 0.3078 -7.8000 -2.0554 25 1 2.4636 -8.8791 -1.7939 26 1 1.1008 -8.4046 0.1550 27 6 2.6227 -3.3799 1.2660 28 6 1.8290 -2.0697 1.2513 29 1 -0.3633 0.0000 1.0276 30 1 -0.3632 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 2.6095 3.2627 -1.5901 33 1 1.0658 2.5594 -2.1313 34 1 -0.1526 4.4431 -1.0553 35 1 0.9986 5.0282 -2.2800 36 1 1.1526 6.3924 -0.2246 37 1 2.6605 5.4817 -0.4824 38 1 0.3804 4.7338 1.4061 39 1 2.0109 5.2846 1.8703 40 1 3.1010 4.6622 2.8610 41 1 4.1315 3.4385 3.3742 42 1 3.2692 -1.0690 0.0000 43 1 2.0691 -1.4906 -2.1391 44 1 0.7605 -2.2927 -1.2364 45 1 2.2902 -4.0008 -2.0961 46 1 3.6842 -3.1640 -1.3687 47 1 3.5124 -6.4789 -2.5999 48 1 2.2922 -3.9981 2.1007 49 1 3.6857 -3.1620 1.3684 50 1 0.7617 -2.2910 1.2402 51 1 2.0711 -1.4877 2.1406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006278576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:09 Heat of formation + Delta-G solvation = -37.890428 kcal Electronic energy + Delta-G solvation = -31876.602817 eV Core-core repulsion = 27811.601736 eV Total energy + Delta-G solvation = -4065.001081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.10106 -40.36258 -38.82856 -38.24957 -36.44599 -34.89722 -34.31140 -33.30856 -32.41720 -31.73048 -31.19281 -27.89305 -27.28839 -26.34088 -24.88023 -23.87969 -23.58067 -22.46162 -21.16443 -20.53428 -20.20733 -18.95364 -18.70974 -18.17849 -17.57916 -17.12141 -16.72693 -16.40207 -16.10499 -15.91973 -15.62791 -15.39594 -15.27729 -15.08230 -14.85145 -14.61720 -14.50683 -14.26910 -14.11732 -14.01188 -13.77892 -13.38308 -13.19008 -13.02478 -12.93448 -12.63515 -12.52756 -12.43868 -12.11221 -12.06348 -11.95240 -11.92832 -11.73133 -11.63626 -11.48974 -11.33353 -10.86709 -10.63774 -10.58554 -10.28198 -9.63217 -9.26602 -8.68706 -7.87194 -5.40194 1.47691 1.48894 1.50041 1.58760 1.99749 2.11353 2.42259 2.50619 3.26600 3.29415 3.53566 3.63694 3.81306 3.87137 3.92335 4.02314 4.09781 4.10985 4.22932 4.29691 4.36031 4.44654 4.49577 4.62026 4.62314 4.65496 4.74267 4.82622 4.83469 4.89125 4.95575 5.03609 5.04595 5.06341 5.12617 5.15176 5.22258 5.26586 5.43639 5.45711 5.49937 5.62446 5.68384 5.73353 5.82027 6.03850 6.39421 6.62518 6.97596 7.13085 7.44572 7.78923 7.80359 8.36968 9.19591 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002793 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.505051 B =10021.809973 C =10524.625344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.514 3.486 4 O -0.557 6.557 5 C 0.147 3.853 6 H 0.119 0.881 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.135 4.135 10 C 0.108 3.892 11 N -0.620 5.620 12 C 0.682 3.318 13 N -0.852 5.852 14 O -0.605 6.605 15 C 0.166 3.834 16 C -0.125 4.125 17 C 0.184 3.816 18 N -0.607 5.607 19 C -0.264 4.264 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.940 5.940 23 Si 0.977 3.023 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.267 1.267 27 C 0.146 3.854 28 C -0.114 4.114 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.409 0.591 41 H 0.414 0.586 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.065 0.935 46 H -0.017 1.017 47 H 0.251 0.749 48 H 0.063 0.937 49 H -0.002 1.002 50 H 0.072 0.928 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 29.741 4.924 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C 0.303 3.697 4 O -0.433 6.433 5 C 0.040 3.960 6 H 0.137 0.863 7 C -0.161 4.161 8 C -0.148 4.148 9 C -0.173 4.173 10 C -0.014 4.014 11 N -0.361 5.361 12 C 0.382 3.618 13 N -0.425 5.425 14 O -0.483 6.483 15 C 0.062 3.938 16 C -0.165 4.165 17 C 0.058 3.942 18 N -0.331 5.331 19 C -0.394 4.394 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.586 5.586 23 Si 0.804 3.196 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.192 1.192 27 C 0.020 3.980 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.243 0.757 41 H 0.247 0.753 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.001 0.999 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.016 0.984 50 H 0.091 0.909 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.888 28.881 4.691 31.220 hybrid contribution 0.831 -1.066 0.065 1.353 sum -10.057 27.816 4.756 29.958 Atomic orbital electron populations 1.22026 0.77970 1.04552 1.02590 1.47913 1.07909 1.04806 1.74047 1.20654 0.87797 0.85908 0.75335 1.90662 1.16586 1.87268 1.48816 1.21190 0.98165 0.86768 0.89882 0.86336 1.21885 1.01568 0.98820 0.93842 1.21516 1.00514 0.92446 1.00313 1.21966 1.01096 1.00282 0.93948 1.22046 1.01446 0.78848 0.99011 1.47103 1.43522 1.14132 1.31327 1.16395 0.79775 0.85051 0.80593 1.42951 1.42528 1.15085 1.41901 1.91202 1.66277 1.17716 1.73102 1.20534 0.95470 0.82622 0.95187 1.22298 1.01197 0.96582 0.96457 1.20508 0.93790 0.90367 0.89575 1.44291 1.77945 1.10343 1.00520 1.19560 1.23527 0.86984 1.09358 0.91188 1.26034 0.97582 1.01556 0.99518 1.70181 1.32018 1.37820 1.18554 0.85129 0.77346 0.78966 0.78133 1.20627 1.22254 1.19189 1.20960 0.95284 0.92492 0.89257 1.22055 1.00889 0.95848 0.96622 0.92174 0.88052 0.90549 0.93746 0.89435 0.89125 0.90049 0.87296 0.93088 0.88539 0.88349 0.75736 0.75341 0.93379 0.92523 0.90966 0.91677 0.99934 0.94021 0.91889 0.98413 0.90904 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 9.03 127.77 1.15 2.73 16 2 N -0.61 -20.46 2.76 -822.46 -2.27 -22.73 16 3 C 0.51 17.91 4.83 87.65 0.42 18.34 16 4 O -0.56 -25.65 12.99 21.58 0.28 -25.37 16 5 C 0.15 3.25 2.78 44.23 0.12 3.38 16 6 H 0.12 1.88 5.69 -2.39 -0.01 1.87 16 7 C -0.12 -2.17 5.36 30.68 0.16 -2.00 16 8 C -0.11 -0.96 5.88 30.63 0.18 -0.78 16 9 C -0.13 -0.97 6.08 30.67 0.19 -0.78 16 10 C 0.11 0.91 6.43 86.36 0.56 1.46 16 11 N -0.62 -12.54 2.97 -817.07 -2.43 -14.97 16 12 C 0.68 19.01 8.18 179.06 1.47 20.47 16 13 N -0.85 -14.76 8.79 -184.75 -1.62 -16.38 16 14 O -0.60 -24.86 12.37 20.62 0.25 -24.61 16 15 C 0.17 6.91 2.48 45.02 0.11 7.02 16 16 C -0.13 -5.30 5.31 30.67 0.16 -5.14 16 17 C 0.18 9.80 5.25 86.36 0.45 10.26 16 18 N -0.61 -33.15 2.99 -699.09 -2.09 -35.23 16 19 C -0.26 -15.16 9.58 84.04 0.81 -14.35 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 21 C -0.05 -2.99 5.05 84.86 0.43 -2.57 16 22 N -0.94 -58.04 11.04 21.65 0.24 -57.81 16 23 Si 0.98 45.90 29.57 68.60 2.03 47.93 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C 0.15 7.02 6.52 86.36 0.56 7.58 16 28 C -0.11 -4.66 5.34 30.67 0.16 -4.50 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.46 6.14 -2.39 -0.01 1.44 16 31 H 0.08 1.75 6.45 -2.39 -0.02 1.73 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.10 0.41 5.56 -2.39 -0.01 0.40 16 40 H 0.41 3.52 6.29 -92.71 -0.58 2.94 16 41 H 0.41 7.07 8.93 -92.71 -0.83 6.24 16 42 H 0.05 2.45 6.90 -2.39 -0.02 2.43 16 43 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.07 2.83 6.72 -2.39 -0.02 2.81 16 45 H 0.06 3.78 6.09 -2.39 -0.01 3.77 16 46 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 47 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 48 H 0.06 2.86 7.93 -2.39 -0.02 2.84 16 49 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 50 H 0.07 2.74 7.72 -2.39 -0.02 2.72 16 51 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -89.35 381.20 0.87 -88.48 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.46 Total: 19.58 kcal Atomic # 6 Polarization: 34.17 SS G_CDS: 6.94 Total: 41.11 kcal Atomic # 7 Polarization: -138.95 SS G_CDS: -8.17 Total: -147.12 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: 0.54 Total: -49.98 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -89.35 0.87 -88.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006278576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.587 kcal (2) G-P(sol) polarization free energy of solvation -89.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds