Wall clock time and date at job start Tue Mar 31 2020 20:43:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.34773 * 119.99785 * 2 1
4 4 O 1.21284 * 120.00222 * 3.79822 * 3 2 1
5 5 C 1.50696 * 119.99903 * 183.79746 * 3 2 1
6 6 C 1.53045 * 109.45968 * 184.99705 * 5 3 2
7 7 C 1.53196 * 109.30968 * 178.62798 * 6 5 3
8 8 N 1.46926 * 108.89804 * 54.56470 * 7 6 5
9 9 C 1.34770 * 120.63331 * 126.46011 * 8 7 6
10 10 N 1.34776 * 120.00091 * 185.35094 * 9 8 7
11 11 O 1.21590 * 120.00276 * 5.35977 * 9 8 7
12 12 C 1.46966 * 118.70978 * 306.64205 * 8 7 6
13 13 C 1.53042 * 109.45180 * 64.93332 * 5 3 2
14 14 C 1.46499 * 120.00150 * 180.02562 * 2 1 3
15 15 C 1.53039 * 109.46147 * 54.14159 * 14 2 1
16 16 C 1.53194 * 109.31347 * 178.61692 * 15 14 2
17 17 N 1.46928 * 108.77661 * 54.63226 * 16 15 14
18 18 C 1.36936 * 120.62798 * 126.36953 * 17 16 15
19 19 H 1.08000 * 120.00299 * 323.51290 * 18 17 16
20 20 C 1.38809 * 119.99794 * 143.51489 * 18 17 16
21 21 N 1.31620 * 120.00294 * 356.91208 * 20 18 17
22 22 Si 1.86799 * 119.99853 * 176.91064 * 20 18 17
23 23 H 1.48499 * 109.47130 * 60.00251 * 22 20 18
24 24 H 1.48507 * 109.47110 * 180.02562 * 22 20 18
25 25 H 1.48499 * 109.47571 * 299.99864 * 22 20 18
26 26 C 1.46921 * 118.74043 * 306.39899 * 17 16 15
27 27 C 1.53048 * 109.45795 * 294.07389 * 14 2 1
28 28 H 1.08999 * 109.47172 * 94.70273 * 1 2 3
29 29 H 1.09006 * 109.47482 * 214.69792 * 1 2 3
30 30 H 1.08994 * 109.47266 * 334.69951 * 1 2 3
31 31 H 1.09006 * 109.46145 * 304.96681 * 5 3 2
32 32 H 1.09000 * 109.50026 * 58.67917 * 6 5 3
33 33 H 1.09002 * 109.49441 * 298.57692 * 6 5 3
34 34 H 1.09006 * 109.58348 * 174.42325 * 7 6 5
35 35 H 1.08995 * 109.58559 * 294.70133 * 7 6 5
36 36 H 0.96999 * 119.99776 * 5.18574 * 10 9 8
37 37 H 0.96997 * 120.00467 * 185.18239 * 10 9 8
38 38 H 1.08999 * 109.46746 * 293.56743 * 12 8 7
39 39 H 1.09002 * 109.71066 * 173.28826 * 12 8 7
40 40 H 1.08993 * 109.49533 * 301.33163 * 13 5 3
41 41 H 1.08999 * 109.49428 * 61.42501 * 13 5 3
42 42 H 1.08999 * 109.46083 * 174.10433 * 14 2 1
43 43 H 1.09004 * 109.49839 * 298.56753 * 15 14 2
44 44 H 1.09001 * 109.49864 * 58.66339 * 15 14 2
45 45 H 1.09004 * 109.58369 * 294.84744 * 16 15 14
46 46 H 1.08997 * 109.70311 * 174.49001 * 16 15 14
47 47 H 0.96995 * 119.99993 * 180.02562 * 21 20 18
48 48 H 1.09009 * 109.58530 * 293.81648 * 26 17 16
49 49 H 1.08995 * 109.70762 * 173.46419 * 26 17 16
50 50 H 1.08993 * 109.49741 * 301.33618 * 27 14 2
51 51 H 1.08997 * 109.49294 * 61.40359 * 27 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1388 1.1672 0.0000
4 8 1.5344 2.2164 0.0696
5 6 3.6433 1.1687 -0.0864
6 6 4.1609 2.6017 0.0573
7 6 5.6919 2.5952 0.0033
8 7 6.1217 1.9193 -1.2284
9 6 6.9690 2.5246 -2.0839
10 7 7.2706 1.9401 -3.2603
11 8 7.4616 3.5979 -1.7945
12 6 5.6065 0.5723 -1.5111
13 6 4.0766 0.6014 -1.4402
14 6 2.1975 -1.2687 -0.0006
15 6 1.7205 -2.1324 -1.1704
16 6 2.5127 -3.4435 -1.1884
17 7 2.3907 -4.0877 0.1265
18 6 1.9616 -5.3839 0.2311
19 1 1.1995 -5.7561 -0.4375
20 6 2.5060 -6.2194 1.1967
21 7 3.4771 -5.7847 1.9715
22 14 1.8603 -7.9608 1.3966
23 1 2.0502 -8.7079 0.1273
24 1 2.6023 -8.6416 2.4881
25 1 0.4147 -7.9172 1.7337
26 6 2.7374 -3.3147 1.3269
27 6 1.9427 -2.0051 1.3167
28 1 -0.3633 -0.0843 -1.0242
29 1 -0.3634 -0.8449 0.5850
30 1 -0.3633 0.9290 0.4392
31 1 4.0536 0.5524 0.7136
32 1 3.8323 3.0132 1.0117
33 1 3.7707 3.2128 -0.7566
34 1 6.0619 3.6206 0.0057
35 1 6.0857 2.0627 0.8689
36 1 6.8213 1.1220 -3.5246
37 1 7.9369 2.3373 -3.8426
38 1 5.9934 -0.1275 -0.7704
39 1 5.9203 0.2603 -2.5073
40 1 3.6879 -0.4108 -1.5517
41 1 3.6871 1.2313 -2.2400
42 1 3.2644 -1.0720 -0.1060
43 1 0.6590 -2.3504 -1.0526
44 1 1.8808 -1.5976 -2.1066
45 1 3.5619 -3.2335 -1.3965
46 1 2.1126 -4.1041 -1.9575
47 1 3.8578 -6.3686 2.6459
48 1 3.8049 -3.0943 1.3239
49 1 2.4852 -3.8882 2.2188
50 1 2.2612 -1.3798 2.1506
51 1 0.8790 -2.2238 1.4112
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001006386124.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:43:02
Heat of formation + Delta-G solvation = -60.194146 kcal
Electronic energy + Delta-G solvation = -31556.702663 eV
Core-core repulsion = 27490.734420 eV
Total energy + Delta-G solvation = -4065.968243 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.87808 -40.91932 -39.14686 -38.10914 -36.52013 -35.02763 -34.02846 -33.60521
-31.94763 -31.73545 -31.18022 -28.79355 -27.03518 -26.18570 -24.38422 -23.85085
-23.73050 -22.66074 -20.90527 -20.70243 -20.04707 -19.21103 -18.64235 -18.14750
-17.88458 -17.03586 -16.75379 -16.57032 -16.34249 -15.75500 -15.69509 -15.39846
-15.26774 -15.06680 -14.96279 -14.66947 -14.43739 -14.19566 -14.06301 -13.94555
-13.66430 -13.37414 -13.19672 -13.04710 -12.88402 -12.77043 -12.62537 -12.46570
-12.28313 -12.01117 -11.93194 -11.84264 -11.74627 -11.61836 -11.44853 -11.33197
-11.29299 -10.74099 -10.66219 -10.49852 -9.60756 -9.58705 -8.48565 -7.83277
-5.38122 1.50814 1.51636 1.57552 1.58384 1.82106 2.01705 2.15055
2.53662 3.22446 3.33402 3.39636 3.67293 3.72396 3.76631 3.85599
4.02348 4.10068 4.17899 4.31220 4.31744 4.41531 4.45742 4.54496
4.58117 4.62429 4.69388 4.74875 4.77793 4.78322 4.83689 4.87973
4.96770 5.02623 5.06363 5.10405 5.18911 5.22912 5.26785 5.42358
5.48099 5.49489 5.64665 5.71366 5.83928 5.87019 6.04194 6.42157
6.50500 6.91254 7.15564 7.24109 7.62279 7.91998 8.44584 9.21625
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.014001 B = 0.003123 C = 0.002768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1999.342048 B = 8964.571864 C =10114.071865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.603 5.603
3 C 0.516 3.484
4 O -0.583 6.583
5 C -0.104 4.104
6 C -0.102 4.102
7 C 0.131 3.869
8 N -0.626 5.626
9 C 0.703 3.297
10 N -0.850 5.850
11 O -0.645 6.645
12 C 0.112 3.888
13 C -0.128 4.128
14 C 0.146 3.854
15 C -0.129 4.129
16 C 0.146 3.854
17 N -0.610 5.610
18 C -0.264 4.264
19 H 0.061 0.939
20 C -0.038 4.038
21 N -0.930 5.930
22 Si 0.960 3.040
23 H -0.276 1.276
24 H -0.296 1.296
25 H -0.281 1.281
26 C 0.185 3.815
27 C -0.138 4.138
28 H 0.063 0.937
29 H 0.071 0.929
30 H 0.066 0.934
31 H 0.111 0.889
32 H 0.079 0.921
33 H 0.056 0.944
34 H 0.081 0.919
35 H 0.084 0.916
36 H 0.411 0.589
37 H 0.420 0.580
38 H 0.088 0.912
39 H 0.109 0.891
40 H 0.100 0.900
41 H 0.070 0.930
42 H 0.110 0.890
43 H 0.055 0.945
44 H 0.085 0.915
45 H 0.032 0.968
46 H 0.055 0.945
47 H 0.250 0.750
48 H 0.009 0.991
49 H 0.049 0.951
50 H 0.060 0.940
51 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.634 11.291 -8.878 14.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.334 5.334
3 C 0.306 3.694
4 O -0.464 6.464
5 C -0.125 4.125
6 C -0.141 4.141
7 C 0.008 3.992
8 N -0.363 5.363
9 C 0.402 3.598
10 N -0.421 5.421
11 O -0.528 6.528
12 C -0.010 4.010
13 C -0.167 4.167
14 C 0.044 3.956
15 C -0.169 4.169
16 C 0.020 3.980
17 N -0.334 5.334
18 C -0.395 4.395
19 H 0.078 0.922
20 C -0.234 4.234
21 N -0.575 5.575
22 Si 0.788 3.212
23 H -0.202 1.202
24 H -0.223 1.223
25 H -0.207 1.207
26 C 0.059 3.941
27 C -0.178 4.178
28 H 0.082 0.918
29 H 0.090 0.910
30 H 0.085 0.915
31 H 0.129 0.871
32 H 0.097 0.903
33 H 0.075 0.925
34 H 0.099 0.901
35 H 0.102 0.898
36 H 0.244 0.756
37 H 0.253 0.747
38 H 0.106 0.894
39 H 0.127 0.873
40 H 0.118 0.882
41 H 0.089 0.911
42 H 0.128 0.872
43 H 0.074 0.926
44 H 0.103 0.897
45 H 0.050 0.950
46 H 0.074 0.926
47 H 0.059 0.941
48 H 0.027 0.973
49 H 0.068 0.932
50 H 0.079 0.921
51 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 2.610 12.393 -8.402 15.198
hybrid contribution -0.492 -1.354 0.244 1.461
sum 2.118 11.038 -8.158 13.888
Atomic orbital electron populations
1.21606 0.79562 1.02658 1.02185 1.48119 1.07242 1.06042 1.71965
1.21031 0.90878 0.82678 0.74810 1.90652 1.71318 1.32407 1.52015
1.21332 0.90354 0.99552 1.01271 1.21625 0.94642 0.94707 1.03124
1.21480 0.93172 0.98840 0.85745 1.47335 1.48101 1.18259 1.22652
1.16088 0.79418 0.82929 0.81337 1.42986 1.47607 1.31842 1.19702
1.90916 1.59212 1.24226 1.78404 1.21857 0.92662 0.82601 1.03924
1.22110 0.96507 1.02956 0.95089 1.21345 0.97128 0.81704 0.95435
1.22258 1.00642 0.96354 0.97611 1.21037 0.97080 0.92493 0.87414
1.44194 1.77937 1.10059 1.01174 1.19348 1.15249 0.87832 1.17074
0.92168 1.25929 0.96659 1.00869 0.99983 1.70051 1.27703 1.36474
1.23243 0.85479 0.77557 0.80997 0.77152 1.20161 1.22257 1.20678
1.20490 0.94169 0.88874 0.90590 1.22420 1.00845 0.97668 0.96912
0.91818 0.91038 0.91531 0.87138 0.90268 0.92502 0.90096 0.89814
0.75576 0.74742 0.89423 0.87261 0.88213 0.91105 0.87235 0.92570
0.89682 0.95005 0.92616 0.94126 0.97251 0.93226 0.92127 0.93210
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.97 9.41 127.77 1.20 3.17 16
2 N -0.60 -14.93 2.76 -822.44 -2.27 -17.20 16
3 C 0.52 13.46 7.00 87.66 0.61 14.08 16
4 O -0.58 -19.26 15.49 -3.04 -0.05 -19.30 16
5 C -0.10 -2.06 1.64 -11.51 -0.02 -2.07 16
6 C -0.10 -2.11 4.65 30.68 0.14 -1.97 16
7 C 0.13 2.55 6.41 86.36 0.55 3.11 16
8 N -0.63 -11.50 2.98 -836.81 -2.49 -13.99 16
9 C 0.70 15.42 8.57 179.06 1.53 16.95 16
10 N -0.85 -10.82 8.77 -184.75 -1.62 -12.44 16
11 O -0.65 -20.32 16.62 -4.00 -0.07 -20.38 16
12 C 0.11 1.43 6.42 86.35 0.55 1.98 16
13 C -0.13 -1.97 4.91 30.67 0.15 -1.82 16
14 C 0.15 3.70 1.55 45.02 0.07 3.77 16
15 C -0.13 -3.31 4.90 30.67 0.15 -3.16 16
16 C 0.15 4.83 6.52 86.36 0.56 5.39 16
17 N -0.61 -26.68 2.97 -699.11 -2.08 -28.76 16
18 C -0.26 -13.29 9.54 84.03 0.80 -12.49 16
19 H 0.06 2.98 7.83 -2.91 -0.02 2.96 16
20 C -0.04 -1.97 5.18 84.86 0.44 -1.53 16
21 N -0.93 -50.94 11.03 21.65 0.24 -50.70 16
22 Si 0.96 42.18 29.55 68.60 2.03 44.21 16
23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16
24 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16
25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
26 C 0.19 7.75 5.21 86.36 0.45 8.20 16
27 C -0.14 -4.43 5.41 30.67 0.17 -4.26 16
28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
29 H 0.07 1.70 6.79 -2.38 -0.02 1.68 16
30 H 0.07 1.70 7.24 -2.39 -0.02 1.69 16
31 H 0.11 2.02 7.47 -2.38 -0.02 2.00 16
32 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16
33 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16
34 H 0.08 1.87 7.04 -2.38 -0.02 1.85 16
35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
36 H 0.41 2.82 6.33 -92.71 -0.59 2.23 16
37 H 0.42 4.42 8.93 -92.71 -0.83 3.59 16
38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
39 H 0.11 0.79 5.59 -2.39 -0.01 0.78 16
40 H 0.10 1.48 4.81 -2.39 -0.01 1.47 16
41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
42 H 0.11 2.46 4.23 -2.39 -0.01 2.45 16
43 H 0.06 1.58 7.60 -2.39 -0.02 1.56 16
44 H 0.08 1.72 7.76 -2.39 -0.02 1.71 16
45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.06 1.87 7.93 -2.39 -0.02 1.85 16
47 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16
48 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16
49 H 0.05 2.48 6.27 -2.39 -0.01 2.47 16
50 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
51 H 0.05 1.69 6.96 -2.39 -0.02 1.68 16
Total: -1.00 -71.06 383.09 0.61 -70.45
By element:
Atomic # 1 Polarization: 19.25 SS G_CDS: -0.45 Total: 18.79 kcal
Atomic # 6 Polarization: 21.97 SS G_CDS: 7.37 Total: 29.34 kcal
Atomic # 7 Polarization: -114.88 SS G_CDS: -8.22 Total: -123.10 kcal
Atomic # 8 Polarization: -39.57 SS G_CDS: -0.11 Total: -39.69 kcal
Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal
Total: -71.06 0.61 -70.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001006386124.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.251 kcal
(2) G-P(sol) polarization free energy of solvation -71.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds