Wall clock time and date at job start Tue Mar 31 2020 21:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00163 * 2 1 4 4 H 1.48505 * 109.46966 * 239.99998 * 3 2 1 5 5 H 1.48497 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47168 * 119.99912 * 3 2 1 7 7 C 1.38813 * 119.99382 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99659 * 163.01622 * 7 2 1 9 9 N 1.36934 * 120.00264 * 343.01924 * 7 2 1 10 10 C 1.46970 * 120.77039 * 331.84601 * 9 7 2 11 11 C 1.53096 * 108.61785 * 234.30932 * 10 9 7 12 12 C 1.53158 * 109.58048 * 304.65310 * 11 10 9 13 13 H 1.09001 * 110.66256 * 299.03604 * 12 11 10 14 14 C 1.52708 * 109.44418 * 60.38650 * 12 11 10 15 15 H 1.08994 * 109.12116 * 181.42199 * 14 12 11 16 16 C 1.52864 * 109.43273 * 61.92225 * 14 12 11 17 17 C 1.53104 * 109.34437 * 61.90163 * 16 14 12 18 18 C 1.53144 * 109.48437 * 299.35177 * 17 16 14 19 19 N 1.46947 * 109.02053 * 54.07745 * 18 17 16 20 20 C 1.34776 * 120.84946 * 125.94529 * 19 18 17 21 21 O 1.21281 * 120.00370 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00079 * 359.97438 * 20 19 18 23 23 F 1.39896 * 109.47130 * 310.00222 * 22 20 19 24 24 C 1.52998 * 109.47367 * 190.00039 * 22 20 19 25 25 C 1.53000 * 109.47085 * 180.02562 * 24 22 20 26 26 C 1.52998 * 109.47260 * 60.00077 * 25 24 22 27 27 C 1.53002 * 109.46884 * 299.99616 * 26 25 24 28 28 C 1.53002 * 109.46947 * 60.00684 * 27 26 25 29 29 C 1.44112 * 121.34891 * 151.65625 * 9 7 2 30 30 H 0.96999 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.60997 * 114.56942 * 10 9 7 32 32 H 1.08995 * 109.75534 * 354.13848 * 10 9 7 33 33 H 1.09006 * 109.45238 * 184.62104 * 11 10 9 34 34 H 1.08999 * 109.44015 * 64.67751 * 11 10 9 35 35 H 1.09001 * 109.48997 * 301.94062 * 16 14 12 36 36 H 1.08998 * 109.48846 * 181.85985 * 16 14 12 37 37 H 1.09007 * 109.46888 * 179.35111 * 17 16 14 38 38 H 1.09002 * 109.47424 * 59.36214 * 17 16 14 39 39 H 1.08997 * 109.54867 * 294.21249 * 18 17 16 40 40 H 1.09002 * 109.62324 * 173.97864 * 18 17 16 41 41 H 1.08997 * 109.47327 * 59.99891 * 24 22 20 42 42 H 1.09000 * 109.47119 * 300.00147 * 24 22 20 43 43 H 1.09000 * 109.47000 * 299.99899 * 25 24 22 44 44 H 1.09008 * 109.46933 * 179.97438 * 25 24 22 45 45 H 1.09000 * 109.47259 * 59.99981 * 26 25 24 46 46 H 1.09004 * 109.47253 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.46990 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47470 * 300.00235 * 27 26 25 49 49 H 1.08995 * 109.46926 * 180.02562 * 28 27 26 50 50 H 1.08990 * 109.47326 * 59.99543 * 28 27 26 51 51 H 1.09003 * 108.26770 * 6.35985 * 29 9 7 52 52 H 1.08998 * 109.66102 * 246.86562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2228 -0.2727 9 7 1.3702 -2.3621 0.3474 10 6 0.2263 -2.3427 1.2700 11 6 0.5116 -3.3093 2.4225 12 6 0.8237 -4.6997 1.8610 13 1 -0.0258 -5.0868 1.2982 14 6 2.0537 -4.6195 0.9595 15 1 2.2560 -5.6061 0.5430 16 6 3.2584 -4.1631 1.7824 17 6 3.5425 -5.1924 2.8796 18 6 2.3242 -5.3068 3.8005 19 7 1.1348 -5.5963 2.9875 20 6 0.3518 -6.6583 3.2621 21 8 -0.6260 -6.8832 2.5808 22 6 0.6918 -7.5672 4.4151 23 9 2.0363 -7.9444 4.3307 24 6 -0.1924 -8.8146 4.3593 25 6 0.1525 -9.7370 5.5302 26 6 -0.0890 -8.9994 6.8488 27 6 0.7953 -7.7520 6.9046 28 6 0.4504 -6.8295 5.7337 29 6 1.7896 -3.6362 -0.1794 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6743 -2.6575 0.7428 32 1 0.0870 -1.3357 1.6630 33 1 -0.3620 -3.3678 3.0719 34 1 1.3661 -2.9489 2.9952 35 1 3.0427 -3.1964 2.2376 36 1 4.1294 -4.0737 1.1332 37 1 4.4084 -4.8747 3.4605 38 1 3.7463 -6.1617 2.4245 39 1 2.1812 -4.3674 4.3344 40 1 2.4813 -6.1132 4.5169 41 1 -0.0207 -9.3398 3.4198 42 1 -1.2399 -8.5206 4.4250 43 1 1.2001 -10.0309 5.4649 44 1 -0.4778 -10.6255 5.4907 45 1 -1.1365 -8.7054 6.9141 46 1 0.1571 -9.6563 7.6830 47 1 0.6230 -7.2263 7.8438 48 1 1.8429 -8.0460 6.8393 49 1 1.0806 -5.9411 5.7732 50 1 -0.5971 -6.5356 5.7991 51 1 2.7060 -3.4851 -0.7500 52 1 1.0144 -4.0358 -0.8332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021708131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:36 Heat of formation + Delta-G solvation = -91.293274 kcal Electronic energy + Delta-G solvation = -32422.641573 eV Core-core repulsion = 28335.404809 eV Total energy + Delta-G solvation = -4087.236764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -49.19378 -41.74055 -39.91633 -38.22289 -37.28293 -34.58218 -33.80523 -32.44117 -31.83230 -31.30312 -31.24439 -27.37889 -26.70998 -24.83336 -24.02300 -23.64289 -23.47929 -22.82062 -20.97221 -20.54884 -19.48733 -18.59674 -18.30261 -17.81722 -17.10682 -16.97900 -16.41658 -16.14755 -16.04468 -15.67282 -15.55491 -15.23444 -15.16321 -14.90059 -14.58318 -14.44831 -14.22941 -14.12592 -13.81732 -13.66373 -13.53210 -13.23098 -13.21232 -13.04143 -13.00410 -12.87578 -12.59114 -12.42835 -12.26049 -12.10996 -12.03447 -11.86610 -11.79703 -11.67614 -11.49410 -11.48961 -11.39309 -11.11406 -11.00865 -10.57513 -10.55005 -9.65568 -8.70105 -7.88320 -5.34708 1.29350 1.48615 1.50297 1.57389 1.75202 2.51768 3.01299 3.27750 3.30954 3.42733 3.57224 3.65363 3.75751 3.89672 3.92187 4.05219 4.09255 4.12361 4.19460 4.23345 4.33839 4.35434 4.43082 4.45249 4.50317 4.59517 4.63065 4.78051 4.80982 4.83508 4.85816 4.88956 4.94570 4.98024 5.01209 5.05194 5.09776 5.14031 5.15477 5.21151 5.28810 5.29404 5.32840 5.37918 5.49099 5.50983 5.58770 5.63998 5.69626 6.30893 6.39627 6.89976 7.12965 7.85278 8.38270 9.19026 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.003064 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.163151 B = 9134.758189 C = 9241.570554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.259 4.259 8 H 0.071 0.929 9 N -0.594 5.594 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.159 3.841 13 H 0.065 0.935 14 C -0.100 4.100 15 H 0.067 0.933 16 C -0.101 4.101 17 C -0.123 4.123 18 C 0.086 3.914 19 N -0.590 5.590 20 C 0.489 3.511 21 O -0.572 6.572 22 C 0.120 3.880 23 F -0.188 7.188 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.141 4.141 29 C 0.155 3.845 30 H 0.250 0.750 31 H -0.011 1.011 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.058 0.942 52 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -17.914 17.030 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.316 5.316 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.056 3.944 13 H 0.083 0.917 14 C -0.121 4.121 15 H 0.085 0.915 16 C -0.139 4.139 17 C -0.160 4.160 18 C -0.035 4.035 19 N -0.320 5.320 20 C 0.276 3.724 21 O -0.451 6.451 22 C 0.099 3.901 23 F -0.169 7.169 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.151 4.151 28 C -0.179 4.179 29 C 0.027 3.973 30 H 0.059 0.941 31 H 0.007 0.993 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.106 0.894 50 H 0.103 0.897 51 H 0.077 0.923 52 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 4.791 -17.895 16.652 24.909 hybrid contribution -0.163 1.232 -0.964 1.572 sum 4.628 -16.663 15.689 23.350 Atomic orbital electron populations 1.70193 1.06823 1.25987 1.55209 1.25820 0.95945 1.01605 1.01045 0.85328 0.77505 0.79071 0.78447 1.20225 1.22362 1.19996 1.19436 0.92882 0.85505 1.41085 0.91101 1.43504 1.35568 1.02237 1.50301 1.20519 0.87910 0.97585 0.88766 1.22287 1.01004 0.94542 0.98857 1.20996 0.97481 0.89025 0.86932 0.91698 1.21651 0.95261 0.98785 0.96379 0.91492 1.21401 0.96319 0.98927 0.97219 1.21858 0.97712 0.99390 0.97083 1.22382 0.83611 1.03473 0.94077 1.48536 1.26698 1.25851 1.30948 1.21522 0.83063 0.81877 0.85915 1.90688 1.29383 1.73448 1.51604 1.21129 0.78581 0.95555 0.94851 1.92792 1.34601 1.92218 1.97271 1.21906 0.99627 0.93863 1.00736 1.21552 1.02607 0.97955 0.93179 1.21616 1.00230 0.96815 0.97295 1.21529 1.00830 0.95712 0.97048 1.22293 1.04310 0.99533 0.91780 1.20362 0.97332 0.86200 0.93361 0.94095 0.99312 0.91933 0.92761 0.90860 0.92155 0.91730 0.88269 0.91678 0.90573 0.86520 0.91815 0.89937 0.91229 0.89903 0.91535 0.89725 0.89275 0.90812 0.89365 0.89740 0.92302 0.98472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.44 11.19 21.65 0.24 -55.20 16 2 C -0.05 -2.69 4.93 84.86 0.42 -2.27 16 3 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.26 -13.94 9.56 84.03 0.80 -13.14 16 8 H 0.07 3.68 7.87 -2.91 -0.02 3.65 16 9 N -0.59 -29.65 2.59 -706.96 -1.83 -31.47 16 10 C 0.18 8.81 5.30 86.32 0.46 9.26 16 11 C -0.13 -4.95 5.02 30.68 0.15 -4.79 16 12 C 0.16 5.79 2.64 44.79 0.12 5.91 16 13 H 0.06 2.77 7.06 -2.39 -0.02 2.75 16 14 C -0.10 -3.51 2.49 -11.01 -0.03 -3.53 16 15 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.10 -3.04 4.86 30.58 0.15 -2.89 16 17 C -0.12 -2.78 6.08 30.68 0.19 -2.59 16 18 C 0.09 1.96 4.42 86.34 0.38 2.35 16 19 N -0.59 -17.62 2.66 -794.76 -2.12 -19.74 16 20 C 0.49 15.03 6.78 87.66 0.59 15.62 16 21 O -0.57 -22.05 15.43 -3.03 -0.05 -22.09 16 22 C 0.12 2.65 0.72 -11.54 -0.01 2.64 16 23 F -0.19 -4.07 13.32 44.97 0.60 -3.47 16 24 C -0.12 -2.52 4.35 30.59 0.13 -2.39 16 25 C -0.12 -1.60 5.80 30.59 0.18 -1.43 16 26 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 27 C -0.11 -1.33 5.80 30.60 0.18 -1.15 16 28 C -0.14 -2.37 4.67 30.60 0.14 -2.22 16 29 C 0.15 6.65 5.75 86.75 0.50 7.14 16 30 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.06 3.43 6.05 -2.39 -0.01 3.42 16 33 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.07 2.72 5.33 -2.39 -0.01 2.70 16 35 H 0.06 2.09 6.16 -2.39 -0.01 2.07 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.68 7.27 -2.39 -0.02 1.66 16 40 H 0.12 2.22 3.87 -2.39 -0.01 2.21 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.79 7.99 -2.39 -0.02 1.77 16 43 H 0.07 0.98 7.80 -2.39 -0.02 0.96 16 44 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.86 7.80 -2.39 -0.02 0.84 16 49 H 0.09 1.40 5.98 -2.39 -0.01 1.38 16 50 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.06 2.44 7.85 -2.39 -0.02 2.42 16 52 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -66.59 376.37 4.32 -62.27 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.90 Total: 18.14 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.54 Total: 5.35 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.70 Total: -106.41 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.60 Total: -3.47 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.59 4.32 -62.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021708131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.018 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds