Wall clock time and date at job start Tue Mar 31 2020 21:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99895 * 2 1 4 4 H 1.48508 * 109.46680 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47219 * 299.99546 * 3 2 1 6 6 H 1.48500 * 109.47358 * 60.00128 * 3 2 1 7 7 C 1.38811 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99682 * 185.52563 * 7 2 1 9 9 N 1.36937 * 120.00273 * 5.51860 * 7 2 1 10 10 C 1.46857 * 120.46920 * 214.69942 * 9 7 2 11 11 C 1.53317 * 109.10739 * 232.61634 * 10 9 7 12 12 C 1.52895 * 108.93846 * 305.90116 * 11 10 9 13 13 H 1.08991 * 109.70062 * 302.11095 * 12 11 10 14 14 C 1.53281 * 109.15885 * 62.13257 * 12 11 10 15 15 H 1.08999 * 109.48424 * 56.43592 * 14 12 11 16 16 C 1.52824 * 109.16403 * 176.25756 * 14 12 11 17 17 C 1.53148 * 109.27408 * 298.20265 * 16 14 12 18 18 C 1.53133 * 109.61027 * 60.85522 * 17 16 14 19 19 N 1.46708 * 110.29628 * 181.37883 * 12 11 10 20 20 C 1.34781 * 120.83907 * 6.32161 * 19 12 11 21 21 O 1.21275 * 120.00254 * 354.07265 * 20 19 12 22 22 C 1.50702 * 119.99473 * 174.06796 * 20 19 12 23 23 F 1.39895 * 109.47477 * 55.38179 * 22 20 19 24 24 C 1.53005 * 109.47239 * 295.37616 * 22 20 19 25 25 C 1.53005 * 109.46950 * 180.02562 * 24 22 20 26 26 C 1.52996 * 109.47143 * 59.99643 * 25 24 22 27 27 C 1.52996 * 109.47554 * 300.00191 * 26 25 24 28 28 C 1.52996 * 109.47120 * 59.99902 * 27 26 25 29 29 C 1.47068 * 120.46189 * 34.67920 * 9 7 2 30 30 H 0.97001 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.52944 * 352.50708 * 10 9 7 32 32 H 1.09002 * 109.53143 * 112.65331 * 10 9 7 33 33 H 1.08999 * 109.55658 * 65.73870 * 11 10 9 34 34 H 1.08992 * 109.56053 * 186.06291 * 11 10 9 35 35 H 1.09007 * 109.50093 * 178.26558 * 16 14 12 36 36 H 1.08998 * 109.50187 * 58.14636 * 16 14 12 37 37 H 1.08998 * 109.44400 * 300.81274 * 17 16 14 38 38 H 1.09000 * 109.42020 * 180.88346 * 17 16 14 39 39 H 1.09006 * 109.53761 * 186.12062 * 18 17 16 40 40 H 1.08997 * 109.61643 * 65.90098 * 18 17 16 41 41 H 1.08994 * 109.47021 * 300.00014 * 24 22 20 42 42 H 1.08994 * 109.47199 * 60.00514 * 24 22 20 43 43 H 1.09001 * 109.46721 * 299.99972 * 25 24 22 44 44 H 1.08997 * 109.46892 * 180.02562 * 25 24 22 45 45 H 1.09005 * 109.46918 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47043 * 60.00527 * 26 25 24 47 47 H 1.09002 * 109.47131 * 299.99680 * 27 26 25 48 48 H 1.09001 * 109.47060 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.46960 * 179.97438 * 28 27 26 50 50 H 1.09001 * 109.46808 * 60.00074 * 28 27 26 51 51 H 1.09001 * 109.69786 * 7.00617 * 29 9 7 52 52 H 1.08998 * 109.69598 * 246.41793 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0864 -1.2044 0.0895 9 7 1.3303 -2.3853 -0.1151 10 6 1.7996 -3.5852 0.5896 11 6 1.9329 -4.7366 -0.4139 12 6 0.6050 -4.9077 -1.1521 13 1 -0.1928 -5.0976 -0.4341 14 6 0.2957 -3.6265 -1.9347 15 1 1.1226 -3.4040 -2.6092 16 6 -0.9830 -3.8307 -2.7463 17 6 -0.7681 -4.9661 -3.7512 18 6 -0.4473 -6.2622 -3.0014 19 7 0.6892 -6.0255 -2.0987 20 6 1.7783 -6.8186 -2.1360 21 8 2.7477 -6.5499 -1.4586 22 6 1.7913 -8.0394 -3.0195 23 9 1.5042 -7.6651 -4.3365 24 6 0.7366 -9.0342 -2.5305 25 6 0.7502 -10.2739 -3.4271 26 6 2.1323 -10.9278 -3.3722 27 6 3.1870 -9.9331 -3.8611 28 6 3.1734 -8.6935 -2.9645 29 6 0.1194 -2.4720 -0.9453 30 1 -0.4850 0.8400 -0.0004 31 1 2.7694 -3.3844 1.0449 32 1 1.0825 -3.8567 1.3643 33 1 2.7217 -4.5069 -1.1302 34 1 2.1765 -5.6569 0.1169 35 1 -1.2250 -2.9122 -3.2812 36 1 -1.8025 -4.0885 -2.0754 37 1 0.0616 -4.7140 -4.4116 38 1 -1.6736 -5.1033 -4.3422 39 1 -0.1882 -7.0427 -3.7169 40 1 -1.3156 -6.5735 -2.4207 41 1 0.9603 -9.3258 -1.5044 42 1 -0.2480 -8.5682 -2.5693 43 1 0.5267 -9.9824 -4.4534 44 1 -0.0014 -10.9823 -3.0790 45 1 2.1419 -11.8112 -4.0106 46 1 2.3558 -11.2192 -2.3459 47 1 2.9635 -9.6417 -4.8874 48 1 4.1716 -10.3992 -3.8224 49 1 3.9251 -7.9851 -3.3126 50 1 3.3969 -8.9849 -1.9382 51 1 -0.0194 -1.5387 -1.4911 52 1 -0.7475 -2.6602 -0.3120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021708139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:39 Heat of formation + Delta-G solvation = -81.852646 kcal Electronic energy + Delta-G solvation = -32434.163399 eV Core-core repulsion = 28347.336011 eV Total energy + Delta-G solvation = -4086.827388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.16487 -41.78216 -39.51748 -38.16414 -37.42052 -34.58010 -34.26149 -32.31466 -31.81466 -31.48362 -30.63557 -27.33904 -26.66275 -24.75340 -24.04170 -23.91603 -23.45915 -21.62768 -21.21221 -20.65735 -20.37406 -18.74565 -18.04496 -17.59785 -17.14496 -16.91430 -16.35732 -16.27243 -15.74232 -15.67190 -15.51007 -15.44288 -15.15640 -15.04414 -14.47574 -14.45798 -14.10082 -13.85956 -13.79334 -13.61846 -13.54104 -13.25166 -13.16132 -13.13507 -12.89146 -12.81682 -12.67748 -12.55891 -12.18563 -12.11087 -12.06639 -12.02920 -11.77402 -11.67310 -11.49274 -11.47629 -11.42960 -11.08539 -10.96954 -10.60861 -10.14672 -9.58788 -8.58073 -7.89889 -5.45584 1.34533 1.42495 1.43357 1.54650 1.80445 2.46539 3.05375 3.24561 3.34133 3.45403 3.59627 3.61886 3.82814 3.86270 3.93466 4.04837 4.11065 4.14973 4.24328 4.26695 4.31275 4.36903 4.42740 4.47204 4.57200 4.60427 4.67083 4.74428 4.81651 4.83025 4.86334 4.90125 4.99043 4.99091 5.03046 5.07593 5.12732 5.15537 5.17655 5.26392 5.30132 5.31058 5.35962 5.40718 5.50682 5.51202 5.57500 5.62728 5.75139 6.34487 6.41065 6.99204 7.13748 7.80571 8.34913 9.14683 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.003189 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.487229 B = 8778.398904 C = 9357.826197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.270 4.270 8 H 0.054 0.946 9 N -0.614 5.614 10 C 0.138 3.862 11 C -0.095 4.095 12 C 0.162 3.838 13 H 0.074 0.926 14 C -0.108 4.108 15 H 0.036 0.964 16 C -0.108 4.108 17 C -0.123 4.123 18 C 0.087 3.913 19 N -0.595 5.595 20 C 0.487 3.513 21 O -0.551 6.551 22 C 0.116 3.884 23 F -0.193 7.193 24 C -0.139 4.139 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.123 4.123 29 C 0.195 3.805 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.017 0.983 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.056 0.944 52 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -24.216 -10.028 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.401 4.401 8 H 0.072 0.928 9 N -0.337 5.337 10 C 0.012 3.988 11 C -0.134 4.134 12 C 0.059 3.941 13 H 0.092 0.908 14 C -0.129 4.129 15 H 0.055 0.945 16 C -0.146 4.146 17 C -0.161 4.161 18 C -0.034 4.034 19 N -0.326 5.326 20 C 0.274 3.726 21 O -0.429 6.429 22 C 0.095 3.905 23 F -0.174 7.174 24 C -0.177 4.177 25 C -0.152 4.152 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.161 4.161 29 C 0.069 3.931 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.074 0.926 52 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -2.668 -23.929 -9.694 25.955 hybrid contribution 0.617 1.825 0.234 1.941 sum -2.051 -22.104 -9.460 24.130 Atomic orbital electron populations 1.70101 1.06420 1.25883 1.55134 1.25978 0.96374 1.01361 1.00041 0.85186 0.78360 0.79661 0.77122 1.19626 1.21259 1.21241 1.19447 0.90261 0.84929 1.45451 0.92804 1.44308 1.29911 1.06470 1.53053 1.21222 0.97111 0.87166 0.93331 1.22179 0.95412 0.97795 0.97999 1.21096 0.98027 0.85069 0.89902 0.90818 1.22021 0.98040 0.95524 0.97353 0.94525 1.21468 0.96196 0.99120 0.97820 1.21851 1.02885 0.93888 0.97512 1.22432 0.88498 0.99264 0.93191 1.48335 1.18038 1.29122 1.37089 1.21482 0.82418 0.84939 0.83777 1.90764 1.34914 1.72395 1.44859 1.21258 1.00177 0.92276 0.76827 1.92787 1.94347 1.92704 1.37522 1.22298 0.97767 0.95907 1.01738 1.21528 0.98328 0.95489 0.99839 1.21606 0.93849 0.98141 1.02276 1.21548 1.00807 0.94246 0.98802 1.21888 0.92990 0.98332 1.02892 1.20546 0.86906 0.95317 0.90317 0.93839 0.93526 0.96477 0.94175 0.90349 0.92129 0.90851 0.93100 0.87446 0.86793 0.88998 0.89398 0.88960 0.91139 0.89058 0.89910 0.91330 0.91613 0.90124 0.92321 0.89647 0.92594 0.97749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 11.01 21.65 0.24 -55.35 16 2 C -0.04 -2.40 5.14 84.86 0.44 -1.96 16 3 Si 0.97 46.38 29.56 68.60 2.03 48.41 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.27 -15.87 9.54 84.03 0.80 -15.07 16 8 H 0.05 3.17 7.83 -2.91 -0.02 3.15 16 9 N -0.61 -33.19 2.98 -698.90 -2.09 -35.28 16 10 C 0.14 6.47 6.50 86.42 0.56 7.03 16 11 C -0.09 -3.93 3.79 30.67 0.12 -3.81 16 12 C 0.16 5.84 2.64 45.01 0.12 5.96 16 13 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 14 C -0.11 -4.28 2.21 -10.74 -0.02 -4.31 16 15 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 16 C -0.11 -3.25 5.24 30.59 0.16 -3.09 16 17 C -0.12 -2.82 6.07 30.69 0.19 -2.64 16 18 C 0.09 1.84 4.73 86.32 0.41 2.25 16 19 N -0.59 -17.37 2.97 -795.35 -2.36 -19.73 16 20 C 0.49 14.71 6.72 87.66 0.59 15.29 16 21 O -0.55 -20.56 11.54 -3.01 -0.03 -20.59 16 22 C 0.12 2.54 0.72 -11.54 -0.01 2.53 16 23 F -0.19 -4.39 13.42 44.97 0.60 -3.79 16 24 C -0.14 -2.10 4.67 30.60 0.14 -1.96 16 25 C -0.11 -1.24 5.80 30.59 0.18 -1.06 16 26 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 27 C -0.12 -1.69 5.80 30.59 0.18 -1.51 16 28 C -0.12 -2.56 4.30 30.59 0.13 -2.43 16 29 C 0.20 9.70 4.54 86.29 0.39 10.10 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.04 1.88 7.16 -2.39 -0.02 1.86 16 34 H 0.08 3.13 6.45 -2.39 -0.02 3.12 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 2.06 4.03 -2.38 -0.01 2.05 16 40 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.23 5.79 -2.39 -0.01 1.22 16 43 H 0.07 0.80 7.80 -2.39 -0.02 0.78 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 1.00 7.80 -2.39 -0.02 0.99 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 51 H 0.06 3.14 6.22 -2.39 -0.01 3.13 16 52 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -70.10 376.61 3.83 -66.27 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.89 Total: 15.87 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 4.55 Total: 4.20 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.21 Total: -110.36 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.03 Total: -20.59 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.60 Total: -3.79 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -70.10 3.83 -66.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021708139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.582 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds