Wall clock time and date at job start Tue Mar 31 2020 21:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47270 * 272.38608 * 3 2 1 5 5 H 1.48494 * 109.47017 * 32.38907 * 3 2 1 6 6 H 1.48502 * 109.46790 * 152.38845 * 3 2 1 7 7 C 1.38816 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99985 * 347.99815 * 7 2 1 9 9 N 1.36937 * 119.99332 * 168.27979 * 7 2 1 10 10 C 1.47429 * 125.64672 * 136.90934 * 9 7 2 11 11 C 1.54687 * 104.93966 * 204.06709 * 10 9 7 12 12 C 1.55156 * 101.68029 * 323.27676 * 11 10 9 13 13 C 1.47018 * 125.65072 * 317.20678 * 9 7 2 14 14 H 1.09001 * 109.87991 * 59.49080 * 13 9 7 15 15 C 1.53004 * 109.88424 * 298.48299 * 13 9 7 16 16 H 1.09003 * 109.58184 * 282.57659 * 15 13 9 17 17 C 1.53191 * 109.58362 * 43.00397 * 15 13 9 18 18 C 1.53045 * 109.30897 * 174.42429 * 17 15 13 19 19 C 1.53043 * 109.53550 * 298.63338 * 18 17 15 20 20 C 1.53193 * 109.31240 * 61.36855 * 19 18 17 21 21 N 1.46921 * 108.77586 * 305.36323 * 20 19 18 22 22 C 1.34777 * 120.63151 * 233.63266 * 21 20 19 23 23 O 1.21276 * 120.00126 * 185.92042 * 22 21 20 24 24 C 1.50700 * 119.99947 * 5.92489 * 22 21 20 25 25 C 1.53005 * 112.85052 * 63.79666 * 24 22 21 26 26 F 1.39902 * 109.47210 * 175.00054 * 25 24 22 27 27 C 1.53776 * 113.61325 * 292.49630 * 24 22 21 28 28 C 1.53785 * 87.08076 * 220.01719 * 27 24 22 29 29 C 1.53778 * 113.61680 * 194.99494 * 24 22 21 30 30 H 0.97000 * 120.00123 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36345 * 322.99701 * 10 9 7 32 32 H 1.08994 * 110.36562 * 85.32054 * 10 9 7 33 33 H 1.08999 * 111.10690 * 205.10106 * 11 10 9 34 34 H 1.09009 * 110.81556 * 81.32087 * 11 10 9 35 35 H 1.09004 * 110.72070 * 276.97282 * 12 11 10 36 36 H 1.09000 * 110.72195 * 153.69726 * 12 11 10 37 37 H 1.08999 * 109.49850 * 294.36892 * 17 15 13 38 38 H 1.08999 * 109.50129 * 54.47469 * 17 15 13 39 39 H 1.09001 * 109.45790 * 178.61300 * 18 17 15 40 40 H 1.09005 * 109.46023 * 58.65595 * 18 17 15 41 41 H 1.09002 * 109.49802 * 301.41140 * 19 18 17 42 42 H 1.09003 * 109.51878 * 181.33375 * 19 18 17 43 43 H 1.09002 * 109.58534 * 185.57620 * 20 19 18 44 44 H 1.09002 * 109.70247 * 65.22204 * 20 19 18 45 45 H 1.09002 * 109.47367 * 294.99885 * 25 24 22 46 46 H 1.08998 * 109.47097 * 55.00025 * 25 24 22 47 47 H 1.09001 * 113.61630 * 334.55924 * 27 24 22 48 48 H 1.08993 * 113.62048 * 105.46866 * 27 24 22 49 49 H 1.09001 * 113.61343 * 270.87943 * 28 27 24 50 50 H 1.09001 * 113.69163 * 139.99410 * 28 27 24 51 51 H 1.08997 * 113.61550 * 254.52643 * 29 24 22 52 52 H 1.09003 * 113.61510 * 25.43080 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4472 2.0756 -1.3989 5 1 1.4738 2.6375 0.7499 6 1 3.5721 1.4260 0.6489 7 6 2.0102 -1.2022 -0.0005 8 1 1.4878 -2.1273 0.1935 9 7 3.3581 -1.2145 -0.2415 10 6 4.3558 -2.0098 0.4973 11 6 5.6910 -1.2527 0.3050 12 6 5.5571 -0.7457 -1.1553 13 6 4.0509 -0.4320 -1.2755 14 1 3.8796 0.6320 -1.1122 15 6 3.5413 -0.8342 -2.6611 16 1 3.9914 -1.7825 -2.9548 17 6 2.0163 -0.9749 -2.6263 18 6 1.5002 -1.2401 -4.0425 19 6 1.8557 -0.0575 -4.9466 20 6 3.3789 0.0936 -5.0075 21 7 3.8984 0.2038 -3.6376 22 6 4.6871 1.2377 -3.2834 23 8 5.1968 1.2624 -2.1832 24 6 4.9355 2.3632 -4.2543 25 6 3.6633 3.1379 -4.6040 26 9 3.9904 4.2300 -5.4149 27 6 5.7621 1.9462 -5.4822 28 6 6.4862 3.2970 -5.3553 29 6 6.1178 3.2651 -3.8626 30 1 -0.4850 0.8400 0.0004 31 1 4.0952 -2.0577 1.5546 32 1 4.4274 -3.0130 0.0774 33 1 6.5422 -1.9256 0.4085 34 1 5.7673 -0.4186 1.0027 35 1 5.8466 -1.5238 -1.8617 36 1 6.1520 0.1550 -1.3069 37 1 1.7424 -1.8070 -1.9777 38 1 1.5745 -0.0545 -2.2446 39 1 0.4177 -1.3651 -4.0170 40 1 1.9612 -2.1473 -4.4332 41 1 1.4154 0.8543 -4.5429 42 1 1.4674 -0.2359 -5.9493 43 1 3.6348 0.9924 -5.5687 44 1 3.8155 -0.7781 -5.4949 45 1 2.9741 2.4830 -5.1372 46 1 3.1913 3.4937 -3.6883 47 1 6.4075 1.0864 -5.3026 48 1 5.1723 1.8509 -6.3938 49 1 6.0043 4.1042 -5.9068 50 1 7.5585 3.2383 -5.5418 51 1 5.8152 4.2345 -3.4668 52 1 6.8604 2.7658 -3.2402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025270633.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:45 Heat of formation + Delta-G solvation = -14.631479 kcal Electronic energy + Delta-G solvation = -34017.641505 eV Core-core repulsion = 29933.729045 eV Total energy + Delta-G solvation = -4083.912459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -48.89804 -42.24311 -39.99256 -38.28160 -38.11778 -34.84469 -33.70124 -32.80239 -31.76214 -30.07475 -28.98468 -26.80447 -26.49183 -26.10358 -24.88764 -23.67246 -22.62412 -21.58556 -21.50899 -20.59359 -19.82617 -19.11202 -17.93762 -17.56212 -17.38625 -17.08133 -16.86470 -16.55331 -16.03910 -15.73938 -15.56316 -15.24486 -15.19361 -14.80112 -14.64258 -14.46368 -14.15913 -14.05759 -13.84997 -13.61989 -13.42460 -13.34881 -13.24116 -13.11734 -12.93779 -12.76040 -12.38867 -12.25976 -12.11838 -12.07994 -12.04715 -11.85051 -11.81912 -11.58114 -11.39182 -11.27025 -11.17552 -11.09809 -10.84855 -10.51954 -10.01708 -9.44861 -8.49597 -8.19705 -5.60220 1.17651 1.26646 1.43871 1.53930 2.01887 2.34811 3.08244 3.13850 3.29297 3.37316 3.47463 3.60228 3.75137 3.82339 3.95600 3.97117 4.03711 4.08258 4.12935 4.19479 4.25961 4.38279 4.43232 4.44226 4.51373 4.53137 4.65505 4.73148 4.74707 4.80694 4.83680 4.84270 4.93657 4.95004 5.04521 5.06246 5.09549 5.13318 5.16762 5.17638 5.26737 5.40169 5.41824 5.45169 5.46750 5.63114 5.81982 5.87697 6.01032 6.18136 6.51087 6.89845 7.29904 7.57453 8.29550 8.97641 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.005871 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.925901 B = 4767.680659 C = 5181.570417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.286 1.286 5 H -0.319 1.319 6 H -0.284 1.284 7 C -0.218 4.218 8 H 0.051 0.949 9 N -0.627 5.627 10 C 0.123 3.877 11 C -0.131 4.131 12 C -0.108 4.108 13 C 0.140 3.860 14 H 0.049 0.951 15 C 0.148 3.852 16 H 0.067 0.933 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.097 3.903 21 N -0.601 5.601 22 C 0.509 3.491 23 O -0.547 6.547 24 C -0.149 4.149 25 C 0.088 3.912 26 F -0.203 7.203 27 C -0.106 4.106 28 C -0.130 4.130 29 C -0.116 4.116 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.844 2.248 -17.078 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.214 1.214 5 H -0.249 1.249 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.068 0.932 9 N -0.354 5.354 10 C -0.002 4.002 11 C -0.169 4.169 12 C -0.146 4.146 13 C 0.036 3.964 14 H 0.066 0.934 15 C 0.044 3.956 16 H 0.085 0.915 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.171 4.171 20 C -0.024 4.024 21 N -0.334 5.334 22 C 0.299 3.701 23 O -0.427 6.427 24 C -0.153 4.153 25 C 0.033 3.967 26 F -0.184 7.184 27 C -0.144 4.144 28 C -0.167 4.167 29 C -0.154 4.154 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.104 0.896 51 H 0.080 0.920 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.880 2.352 -16.497 20.465 hybrid contribution -0.450 0.994 0.935 1.437 sum 11.429 3.345 -15.562 19.596 Atomic orbital electron populations 1.69843 1.06544 1.26645 1.55094 1.25684 0.95121 0.98968 0.98495 0.86060 0.77739 0.82123 0.76951 1.21352 1.24909 1.21021 1.18095 0.81841 0.91862 1.42891 0.93197 1.45069 1.02695 1.52725 1.34960 1.21830 0.88898 0.94318 0.95140 1.22732 0.97534 0.99516 0.97111 1.22901 0.95133 1.00780 0.95750 1.21866 0.92178 0.95191 0.87211 0.93359 1.21707 0.95575 0.89590 0.88775 0.91494 1.22067 0.93822 1.02374 0.96582 1.21581 1.00441 0.98766 0.94840 1.21965 0.95660 0.98120 1.01327 1.22244 0.94036 1.04627 0.81529 1.48313 1.48402 1.24052 1.12597 1.20633 0.78253 0.83241 0.88010 1.90663 1.50578 1.78519 1.22897 1.22855 0.97300 0.95959 0.99185 1.21716 0.95177 0.85591 0.94240 1.92726 1.93941 1.56736 1.74988 1.22980 0.97635 0.98844 0.94918 1.22958 1.01719 0.97702 0.94365 1.22812 0.95550 0.98282 0.98768 0.93057 0.94586 0.94476 0.88715 0.93665 0.91774 0.88679 0.90948 0.94575 0.92946 0.90810 0.93689 0.87431 0.87547 0.88689 0.87602 0.92463 0.88859 0.88185 0.88401 0.89623 0.91951 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.97 21.65 0.30 -56.90 16 2 C 0.01 0.86 3.56 84.86 0.30 1.17 16 3 Si 0.94 51.39 23.68 68.60 1.62 53.02 16 4 H -0.29 -15.28 7.07 99.48 0.70 -14.58 16 5 H -0.32 -17.77 7.11 99.48 0.71 -17.07 16 6 H -0.28 -16.18 6.90 99.48 0.69 -15.49 16 7 C -0.22 -12.24 7.08 84.03 0.59 -11.64 16 8 H 0.05 3.08 8.06 -2.92 -0.02 3.05 16 9 N -0.63 -30.77 2.51 -668.70 -1.68 -32.45 16 10 C 0.12 5.12 7.22 86.78 0.63 5.75 16 11 C -0.13 -4.76 7.07 31.91 0.23 -4.53 16 12 C -0.11 -4.10 5.49 31.78 0.17 -3.93 16 13 C 0.14 6.20 1.33 45.34 0.06 6.26 16 14 H 0.05 2.44 1.43 -2.47 0.00 2.44 16 15 C 0.15 5.65 2.75 44.98 0.12 5.77 16 16 H 0.07 2.41 7.69 -2.39 -0.02 2.39 16 17 C -0.11 -4.64 3.70 30.67 0.11 -4.52 16 18 C -0.12 -3.69 5.88 30.62 0.18 -3.51 16 19 C -0.13 -3.16 5.92 30.67 0.18 -2.98 16 20 C 0.10 2.08 5.30 86.36 0.46 2.53 16 21 N -0.60 -18.76 2.97 -795.03 -2.36 -21.12 16 22 C 0.51 16.74 6.40 87.66 0.56 17.30 16 23 O -0.55 -21.95 8.84 -3.02 -0.03 -21.98 16 24 C -0.15 -3.69 0.70 -52.40 -0.04 -3.72 16 25 C 0.09 2.12 6.67 71.98 0.48 2.60 16 26 F -0.20 -4.63 14.58 44.97 0.66 -3.97 16 27 C -0.11 -1.80 5.86 31.12 0.18 -1.61 16 28 C -0.13 -2.23 7.56 31.12 0.24 -1.99 16 29 C -0.12 -2.80 6.70 31.12 0.21 -2.59 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.06 2.17 7.57 -2.39 -0.02 2.15 16 36 H 0.10 3.75 5.41 -33.19 -0.18 3.57 16 37 H 0.07 3.57 5.74 -2.39 -0.01 3.56 16 38 H 0.04 1.80 5.06 -2.39 -0.01 1.79 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.04 1.25 7.93 -2.39 -0.02 1.23 16 42 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.11 1.77 3.07 -2.39 -0.01 1.76 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.11 2.15 5.42 -2.39 -0.01 2.14 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 48 H 0.10 1.24 7.24 -2.39 -0.02 1.22 16 49 H 0.10 1.66 6.38 -2.39 -0.02 1.64 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 52 H 0.08 2.20 7.68 -2.39 -0.02 2.19 16 Total: -1.00 -70.08 361.41 3.92 -66.16 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.73 Total: 16.89 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 4.67 Total: 0.35 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.74 Total: -110.47 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.03 Total: -21.98 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.66 Total: -3.97 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 1.62 Total: 53.02 kcal Total: -70.08 3.92 -66.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025270633.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.531 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds