Wall clock time and date at job start Tue Mar 31 2020 20:58:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36930 * 120.00354 * 2 1
4 4 H 1.08002 * 120.00052 * 213.91229 * 3 2 1
5 5 C 1.38818 * 120.00178 * 33.90693 * 3 2 1
6 6 N 1.31621 * 119.99585 * 5.42485 * 5 3 2
7 7 Si 1.86799 * 120.00057 * 185.42546 * 5 3 2
8 8 H 1.48500 * 109.47029 * 60.00297 * 7 5 3
9 9 H 1.48504 * 109.46917 * 179.97438 * 7 5 3
10 10 H 1.48497 * 109.47233 * 299.99756 * 7 5 3
11 11 C 1.46501 * 119.99643 * 179.97438 * 2 1 3
12 12 H 1.08996 * 109.52272 * 180.08328 * 11 2 1
13 13 C 1.53039 * 109.49671 * 60.00348 * 11 2 1
14 14 C 1.53042 * 109.53607 * 178.68085 * 13 11 2
15 15 C 1.53201 * 109.31279 * 61.36555 * 14 13 11
16 16 N 1.46924 * 108.77253 * 305.36188 * 15 14 13
17 17 C 1.34771 * 120.63010 * 233.58276 * 16 15 14
18 18 O 1.21283 * 119.99789 * 174.21266 * 17 16 15
19 19 C 1.50697 * 120.00324 * 354.21723 * 17 16 15
20 20 H 1.09008 * 109.52221 * 334.49028 * 19 17 16
21 21 C 1.53036 * 109.49990 * 214.40987 * 19 17 16
22 22 C 1.53047 * 109.53881 * 178.67930 * 21 19 17
23 23 C 1.53197 * 109.30967 * 61.36897 * 22 21 19
24 24 N 1.46927 * 108.77211 * 305.36026 * 23 22 21
25 25 C 1.34778 * 120.63289 * 233.58688 * 24 23 22
26 26 N 1.34769 * 119.99926 * 5.06372 * 25 24 23
27 27 O 1.21586 * 120.00003 * 185.05938 * 25 24 23
28 28 C 1.46934 * 118.73822 * 53.86645 * 24 23 22
29 29 C 1.46930 * 118.73950 * 53.86342 * 16 15 14
30 30 H 1.09002 * 109.47326 * 274.89674 * 1 2 3
31 31 H 1.09004 * 109.47389 * 34.89353 * 1 2 3
32 32 H 1.08996 * 109.47612 * 154.89123 * 1 2 3
33 33 H 0.97002 * 119.99450 * 180.02562 * 6 5 3
34 34 H 1.08998 * 109.45882 * 58.66283 * 13 11 2
35 35 H 1.08994 * 109.45841 * 298.69528 * 13 11 2
36 36 H 1.08997 * 109.50235 * 301.41248 * 14 13 11
37 37 H 1.08995 * 109.49801 * 181.31538 * 14 13 11
38 38 H 1.09002 * 109.58472 * 185.57428 * 15 14 13
39 39 H 1.08999 * 109.69970 * 65.22009 * 15 14 13
40 40 H 1.08999 * 109.46124 * 58.66497 * 21 19 17
41 41 H 1.08995 * 109.45124 * 298.69301 * 21 19 17
42 42 H 1.08992 * 109.49644 * 301.41489 * 22 21 19
43 43 H 1.09002 * 109.52487 * 181.32785 * 22 21 19
44 44 H 1.08994 * 109.58453 * 185.57798 * 23 22 21
45 45 H 1.09001 * 109.58959 * 65.14931 * 23 22 21
46 46 H 0.97002 * 120.00232 * 174.86152 * 26 25 24
47 47 H 0.97007 * 120.00301 * 354.58522 * 26 25 24
48 48 H 1.08997 * 109.58422 * 65.92400 * 28 24 23
49 49 H 1.08993 * 109.58452 * 186.35008 * 28 24 23
50 50 H 1.09005 * 109.58581 * 65.92188 * 29 16 15
51 51 H 1.08994 * 109.58680 * 186.35136 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1858 0.0000
4 1 3.0919 1.2653 -0.5218
5 6 1.6327 2.2858 0.6706
6 7 0.5405 2.1617 1.3945
7 14 2.4872 3.9422 0.5457
8 1 2.5255 4.3735 -0.8748
9 1 1.7415 4.9456 1.3472
10 1 3.8735 3.8245 1.0649
11 6 2.1974 -1.2688 0.0006
12 1 3.2692 -1.0706 0.0020
13 6 1.8281 -2.0723 -1.2485
14 6 2.6174 -3.3833 -1.2655
15 6 2.2494 -4.2124 -0.0309
16 7 2.4652 -3.3938 1.1699
17 6 3.2355 -3.8452 2.1794
18 8 3.4918 -3.1204 3.1174
19 6 3.7784 -5.2505 2.1427
20 1 3.1295 -5.8758 1.5294
21 6 3.8351 -5.8135 3.5646
22 6 4.3554 -7.2523 3.5250
23 6 5.7729 -7.2626 2.9441
24 7 5.7531 -6.5919 1.6369
25 6 6.2432 -7.2066 0.5422
26 7 6.6639 -8.4847 0.6186
27 8 6.3057 -6.6081 -0.5143
28 6 5.1944 -5.2359 1.5470
29 6 1.8201 -2.0762 1.2519
30 1 -0.3634 0.0877 1.0239
31 1 -0.3634 0.8429 -0.5879
32 1 -0.3634 -0.9305 -0.4360
33 1 0.1791 2.9304 1.8628
34 1 2.0697 -1.4914 -2.1385
35 1 0.7605 -2.2914 -1.2367
36 1 3.6853 -3.1653 -1.2522
37 1 2.3715 -3.9444 -2.1670
38 1 2.8799 -5.1004 0.0141
39 1 1.2024 -4.5101 -0.0870
40 1 2.8362 -5.8006 4.0004
41 1 4.5037 -5.2022 4.1706
42 1 3.7011 -7.8586 2.8988
43 1 4.3735 -7.6611 4.5353
44 1 6.1101 -8.2918 2.8216
45 1 6.4474 -6.7325 3.6165
46 1 6.9466 -8.9510 -0.1836
47 1 6.6877 -8.9371 1.4763
48 1 5.8227 -4.5440 2.1079
49 1 5.1498 -4.9277 0.5026
50 1 0.7382 -2.2012 1.2970
51 1 2.1672 -1.5543 2.1436
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027483693.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:58:26
Heat of formation + Delta-G solvation = -38.024157 kcal
Electronic energy + Delta-G solvation = -31305.471127 eV
Core-core repulsion = 27240.464247 eV
Total energy + Delta-G solvation = -4065.006880 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.88660 -39.80415 -37.82814 -36.91321 -35.00738 -34.26617 -32.67930 -32.36213
-31.45574 -31.10273 -28.71709 -25.93934 -25.77087 -25.45755 -24.01602 -23.24073
-21.85635 -21.55711 -20.00580 -19.31718 -18.75848 -18.39493 -17.22640 -17.07112
-16.65670 -15.85645 -15.50452 -15.12918 -15.08186 -14.90636 -14.59954 -14.33811
-14.07916 -13.82428 -13.56223 -13.51306 -13.33104 -13.29820 -12.91339 -12.60773
-12.45402 -12.22788 -11.85021 -11.77104 -11.38770 -11.27914 -11.02000 -10.97712
-10.83407 -10.74711 -10.53901 -10.46125 -10.38955 -10.31214 -10.13323 -9.99942
-9.88148 -9.66755 -9.45429 -8.91191 -8.51123 -8.25439 -6.56082 -5.68932
-3.26958 2.36870 2.83099 2.96223 3.26129 3.43091 3.46977 3.48575
3.74794 4.32712 4.48139 4.52352 4.54258 4.69475 4.73132 4.91669
5.00361 5.13494 5.23523 5.24984 5.38075 5.40207 5.47005 5.48313
5.52994 5.60008 5.63169 5.70884 5.83428 5.87761 5.98799 6.03914
6.08652 6.09110 6.23034 6.32677 6.43632 6.46785 6.58251 6.59889
6.74751 6.83439 7.00181 7.07619 7.34998 7.52795 7.73348 7.76134
7.86199 8.31860 8.43257 8.51940 9.28744 9.88053 10.43056 11.33641
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017496 B = 0.002813 C = 0.002735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.962302 B = 9952.348404 C =10234.995461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.156 3.844
2 N -0.589 5.589
3 C -0.262 4.262
4 H 0.063 0.937
5 C 0.013 3.987
6 N -0.901 5.901
7 Si 0.904 3.096
8 H -0.283 1.283
9 H -0.290 1.290
10 H -0.281 1.281
11 C 0.169 3.831
12 H 0.065 0.935
13 C -0.133 4.133
14 C -0.130 4.130
15 C 0.106 3.894
16 N -0.604 5.604
17 C 0.517 3.483
18 O -0.537 6.537
19 C -0.123 4.123
20 H 0.094 0.906
21 C -0.103 4.103
22 C -0.133 4.133
23 C 0.109 3.891
24 N -0.626 5.626
25 C 0.709 3.291
26 N -0.869 5.869
27 O -0.588 6.588
28 C 0.142 3.858
29 C 0.099 3.901
30 H 0.034 0.966
31 H 0.034 0.966
32 H 0.001 0.999
33 H 0.254 0.746
34 H 0.063 0.937
35 H 0.058 0.942
36 H 0.066 0.934
37 H 0.069 0.931
38 H 0.079 0.921
39 H 0.065 0.935
40 H 0.070 0.930
41 H 0.079 0.921
42 H 0.068 0.932
43 H 0.080 0.920
44 H 0.077 0.923
45 H 0.074 0.926
46 H 0.413 0.587
47 H 0.395 0.605
48 H 0.077 0.923
49 H 0.100 0.900
50 H 0.060 0.940
51 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.343 -25.811 1.833 26.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.011 3.989
2 N -0.310 5.310
3 C -0.392 4.392
4 H 0.081 0.919
5 C -0.187 4.187
6 N -0.544 5.544
7 Si 0.733 3.267
8 H -0.210 1.210
9 H -0.216 1.216
10 H -0.207 1.207
11 C 0.060 3.940
12 H 0.083 0.917
13 C -0.173 4.173
14 C -0.169 4.169
15 C -0.017 4.017
16 N -0.337 5.337
17 C 0.303 3.697
18 O -0.414 6.414
19 C -0.145 4.145
20 H 0.112 0.888
21 C -0.141 4.141
22 C -0.172 4.172
23 C -0.014 4.014
24 N -0.364 5.364
25 C 0.408 3.592
26 N -0.440 5.440
27 O -0.466 6.466
28 C 0.019 3.981
29 C -0.024 4.024
30 H 0.052 0.948
31 H 0.053 0.947
32 H 0.019 0.981
33 H 0.064 0.936
34 H 0.082 0.918
35 H 0.076 0.924
36 H 0.084 0.916
37 H 0.087 0.913
38 H 0.097 0.903
39 H 0.084 0.916
40 H 0.089 0.911
41 H 0.098 0.902
42 H 0.087 0.913
43 H 0.099 0.901
44 H 0.096 0.904
45 H 0.092 0.908
46 H 0.245 0.755
47 H 0.225 0.775
48 H 0.095 0.905
49 H 0.118 0.882
50 H 0.078 0.922
51 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 7.320 -24.698 1.805 25.823
hybrid contribution 0.344 0.419 0.126 0.557
sum 7.664 -24.279 1.932 25.533
Atomic orbital electron populations
1.20823 0.83180 0.95401 0.99448 1.43783 1.01492 1.00019 1.85752
1.19076 1.05459 0.87824 1.26818 0.91933 1.25329 0.97782 0.99224
0.96370 1.69984 1.22115 1.29605 1.32725 0.86363 0.79211 0.83589
0.77500 1.20953 1.21605 1.20734 1.20766 0.96555 0.86214 0.90499
0.91667 1.22085 0.99513 0.95032 1.00622 1.21887 1.01214 0.97152
0.96619 1.21777 1.01153 0.93733 0.85042 1.48343 1.48769 1.19311
1.17309 1.20281 0.78689 0.88337 0.82388 1.90713 1.58274 1.57843
1.34528 1.21831 0.98059 0.95110 0.99518 0.88772 1.21379 1.02797
0.95178 0.94784 1.21936 0.95994 0.97572 1.01657 1.21708 0.97981
0.97144 0.84563 1.47232 1.64361 1.17560 1.07287 1.15847 0.78001
0.81643 0.83660 1.43165 1.73666 1.13269 1.13887 1.90992 1.62055
1.65134 1.28413 1.21440 0.91466 0.81860 1.03378 1.22632 0.96362
0.80905 1.02540 0.94801 0.94702 0.98051 0.93610 0.91783 0.92375
0.91568 0.91271 0.90290 0.91650 0.91096 0.90188 0.91328 0.90121
0.90448 0.90801 0.75474 0.77453 0.90502 0.88158 0.92176 0.89008
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.82 7.97 59.84 0.48 4.29 16
2 N -0.59 -14.89 2.78 -173.09 -0.48 -15.37 16
3 C -0.26 -7.35 9.47 -15.06 -0.14 -7.49 16
4 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16
5 C 0.01 0.36 5.26 -17.43 -0.09 0.27 16
6 N -0.90 -26.63 11.02 55.49 0.61 -26.02 16
7 Si 0.90 22.31 29.56 -169.99 -5.02 17.28 16
8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
11 C 0.17 3.55 2.75 -67.58 -0.19 3.37 16
12 H 0.07 1.48 7.89 -51.93 -0.41 1.07 16
13 C -0.13 -2.28 5.13 -26.69 -0.14 -2.42 16
14 C -0.13 -1.78 6.08 -26.61 -0.16 -1.94 16
15 C 0.11 1.35 6.14 -3.71 -0.02 1.33 16
16 N -0.60 -9.70 2.97 -172.50 -0.51 -10.22 16
17 C 0.52 8.23 6.69 -10.99 -0.07 8.16 16
18 O -0.54 -10.75 15.71 5.55 0.09 -10.67 16
19 C -0.12 -1.39 1.87 -91.43 -0.17 -1.56 16
20 H 0.09 0.96 6.23 -51.92 -0.32 0.63 16
21 C -0.10 -0.99 4.79 -26.69 -0.13 -1.11 16
22 C -0.13 -0.80 6.08 -26.61 -0.16 -0.96 16
23 C 0.11 0.64 6.43 -3.71 -0.02 0.61 16
24 N -0.63 -5.82 2.97 -178.23 -0.53 -6.35 16
25 C 0.71 7.55 8.57 -86.92 -0.75 6.81 16
26 N -0.87 -5.18 8.79 27.63 0.24 -4.93 16
27 O -0.59 -9.02 16.61 5.29 0.09 -8.93 16
28 C 0.14 1.65 5.64 -3.48 -0.02 1.63 16
29 C 0.10 1.97 5.82 -3.48 -0.02 1.95 16
30 H 0.03 0.90 7.18 -51.93 -0.37 0.53 16
31 H 0.03 0.90 7.84 -51.93 -0.41 0.50 16
32 H 0.00 0.02 6.46 -51.93 -0.34 -0.31 16
33 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
35 H 0.06 0.98 6.72 -51.93 -0.35 0.63 16
36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.08 0.86 5.37 -51.93 -0.28 0.58 16
39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
41 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16
42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
44 H 0.08 0.23 5.57 -51.93 -0.29 -0.06 16
45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
46 H 0.41 2.03 8.93 -40.82 -0.36 1.67 16
47 H 0.39 1.18 6.29 -40.82 -0.26 0.92 16
48 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
49 H 0.10 1.33 6.82 -51.93 -0.35 0.98 16
50 H 0.06 1.20 7.53 -51.93 -0.39 0.81 16
51 H 0.09 2.17 7.00 -51.93 -0.36 1.81 16
LS Contribution 387.55 15.07 5.84 5.84
Total: -1.00 -35.46 387.55 -9.54 -45.00
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: -8.26 Total: 1.44 kcal
Atomic # 6 Polarization: 14.54 SS G_CDS: -1.61 Total: 12.93 kcal
Atomic # 7 Polarization: -62.23 SS G_CDS: -0.67 Total: -62.90 kcal
Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.60 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -35.46 -9.54 -45.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027483693.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.979 kcal
(2) G-P(sol) polarization free energy of solvation -35.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds