Wall clock time and date at job start Tue Mar 31 2020 20:58:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36930 * 120.00354 * 2 1
4 4 H 1.08002 * 120.00052 * 213.91229 * 3 2 1
5 5 C 1.38818 * 120.00178 * 33.90693 * 3 2 1
6 6 N 1.31621 * 119.99585 * 5.42485 * 5 3 2
7 7 Si 1.86799 * 120.00057 * 185.42546 * 5 3 2
8 8 H 1.48500 * 109.47029 * 60.00297 * 7 5 3
9 9 H 1.48504 * 109.46917 * 179.97438 * 7 5 3
10 10 H 1.48497 * 109.47233 * 299.99756 * 7 5 3
11 11 C 1.46501 * 119.99643 * 179.97438 * 2 1 3
12 12 H 1.08996 * 109.52272 * 180.08328 * 11 2 1
13 13 C 1.53039 * 109.49671 * 60.00348 * 11 2 1
14 14 C 1.53042 * 109.53607 * 178.68085 * 13 11 2
15 15 C 1.53201 * 109.31279 * 61.36555 * 14 13 11
16 16 N 1.46924 * 108.77253 * 305.36188 * 15 14 13
17 17 C 1.34771 * 120.63010 * 233.58276 * 16 15 14
18 18 O 1.21283 * 119.99789 * 174.21266 * 17 16 15
19 19 C 1.50697 * 120.00324 * 354.21723 * 17 16 15
20 20 H 1.09008 * 109.52221 * 334.49028 * 19 17 16
21 21 C 1.53036 * 109.49990 * 214.40987 * 19 17 16
22 22 C 1.53047 * 109.53881 * 178.67930 * 21 19 17
23 23 C 1.53197 * 109.30967 * 61.36897 * 22 21 19
24 24 N 1.46927 * 108.77211 * 305.36026 * 23 22 21
25 25 C 1.34778 * 120.63289 * 233.58688 * 24 23 22
26 26 N 1.34769 * 119.99926 * 5.06372 * 25 24 23
27 27 O 1.21586 * 120.00003 * 185.05938 * 25 24 23
28 28 C 1.46934 * 118.73822 * 53.86645 * 24 23 22
29 29 C 1.46930 * 118.73950 * 53.86342 * 16 15 14
30 30 H 1.09002 * 109.47326 * 274.89674 * 1 2 3
31 31 H 1.09004 * 109.47389 * 34.89353 * 1 2 3
32 32 H 1.08996 * 109.47612 * 154.89123 * 1 2 3
33 33 H 0.97002 * 119.99450 * 180.02562 * 6 5 3
34 34 H 1.08998 * 109.45882 * 58.66283 * 13 11 2
35 35 H 1.08994 * 109.45841 * 298.69528 * 13 11 2
36 36 H 1.08997 * 109.50235 * 301.41248 * 14 13 11
37 37 H 1.08995 * 109.49801 * 181.31538 * 14 13 11
38 38 H 1.09002 * 109.58472 * 185.57428 * 15 14 13
39 39 H 1.08999 * 109.69970 * 65.22009 * 15 14 13
40 40 H 1.08999 * 109.46124 * 58.66497 * 21 19 17
41 41 H 1.08995 * 109.45124 * 298.69301 * 21 19 17
42 42 H 1.08992 * 109.49644 * 301.41489 * 22 21 19
43 43 H 1.09002 * 109.52487 * 181.32785 * 22 21 19
44 44 H 1.08994 * 109.58453 * 185.57798 * 23 22 21
45 45 H 1.09001 * 109.58959 * 65.14931 * 23 22 21
46 46 H 0.97002 * 120.00232 * 174.86152 * 26 25 24
47 47 H 0.97007 * 120.00301 * 354.58522 * 26 25 24
48 48 H 1.08997 * 109.58422 * 65.92400 * 28 24 23
49 49 H 1.08993 * 109.58452 * 186.35008 * 28 24 23
50 50 H 1.09005 * 109.58581 * 65.92188 * 29 16 15
51 51 H 1.08994 * 109.58680 * 186.35136 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1858 0.0000
4 1 3.0919 1.2653 -0.5218
5 6 1.6327 2.2858 0.6706
6 7 0.5405 2.1617 1.3945
7 14 2.4872 3.9422 0.5457
8 1 2.5255 4.3735 -0.8748
9 1 1.7415 4.9456 1.3472
10 1 3.8735 3.8245 1.0649
11 6 2.1974 -1.2688 0.0006
12 1 3.2692 -1.0706 0.0020
13 6 1.8281 -2.0723 -1.2485
14 6 2.6174 -3.3833 -1.2655
15 6 2.2494 -4.2124 -0.0309
16 7 2.4652 -3.3938 1.1699
17 6 3.2355 -3.8452 2.1794
18 8 3.4918 -3.1204 3.1174
19 6 3.7784 -5.2505 2.1427
20 1 3.1295 -5.8758 1.5294
21 6 3.8351 -5.8135 3.5646
22 6 4.3554 -7.2523 3.5250
23 6 5.7729 -7.2626 2.9441
24 7 5.7531 -6.5919 1.6369
25 6 6.2432 -7.2066 0.5422
26 7 6.6639 -8.4847 0.6186
27 8 6.3057 -6.6081 -0.5143
28 6 5.1944 -5.2359 1.5470
29 6 1.8201 -2.0762 1.2519
30 1 -0.3634 0.0877 1.0239
31 1 -0.3634 0.8429 -0.5879
32 1 -0.3634 -0.9305 -0.4360
33 1 0.1791 2.9304 1.8628
34 1 2.0697 -1.4914 -2.1385
35 1 0.7605 -2.2914 -1.2367
36 1 3.6853 -3.1653 -1.2522
37 1 2.3715 -3.9444 -2.1670
38 1 2.8799 -5.1004 0.0141
39 1 1.2024 -4.5101 -0.0870
40 1 2.8362 -5.8006 4.0004
41 1 4.5037 -5.2022 4.1706
42 1 3.7011 -7.8586 2.8988
43 1 4.3735 -7.6611 4.5353
44 1 6.1101 -8.2918 2.8216
45 1 6.4474 -6.7325 3.6165
46 1 6.9466 -8.9510 -0.1836
47 1 6.6877 -8.9371 1.4763
48 1 5.8227 -4.5440 2.1079
49 1 5.1498 -4.9277 0.5026
50 1 0.7382 -2.2012 1.2970
51 1 2.1672 -1.5543 2.1436
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027483693.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:58:25
Heat of formation + Delta-G solvation = -63.906895 kcal
Electronic energy + Delta-G solvation = -31306.593487 eV
Core-core repulsion = 27240.464247 eV
Total energy + Delta-G solvation = -4066.129240 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.54 seconds
Orbital eigenvalues (eV)
-41.85918 -40.91228 -39.13638 -37.99594 -36.75946 -35.06503 -34.02075 -33.36509
-32.85107 -32.26906 -30.36944 -28.02256 -26.78611 -26.44863 -25.48580 -24.48473
-23.08960 -22.64756 -21.04718 -20.54166 -19.76630 -19.38978 -18.77938 -18.24795
-17.90526 -17.02347 -16.93571 -16.45735 -16.12193 -15.92567 -15.67569 -15.60214
-15.32485 -15.28423 -14.87681 -14.73550 -14.44498 -14.32166 -14.14241 -13.91999
-13.85649 -13.70963 -13.39057 -12.94982 -12.80889 -12.64611 -12.48727 -12.26456
-12.20395 -12.16532 -12.01870 -11.94928 -11.76536 -11.75700 -11.53938 -11.38020
-11.32430 -10.76232 -10.67556 -10.65439 -9.74022 -9.62002 -8.63653 -7.85553
-5.47108 1.39952 1.42418 1.45135 1.51206 1.78300 2.01634 2.14743
2.47295 3.21356 3.26667 3.43618 3.61055 3.68454 3.75091 3.94238
4.01081 4.02484 4.06748 4.11053 4.22365 4.26385 4.36497 4.46457
4.54133 4.57735 4.66679 4.72405 4.74354 4.78008 4.87174 4.88763
4.94925 5.02456 5.04550 5.11204 5.13232 5.21366 5.37671 5.39008
5.41651 5.48326 5.53606 5.62317 5.69879 5.83884 6.04630 6.36026
6.43684 6.92578 7.12585 7.15277 7.62602 7.82248 8.30488 9.14052
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017496 B = 0.002813 C = 0.002735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.962302 B = 9952.348404 C =10234.995461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.173 3.827
2 N -0.606 5.606
3 C -0.276 4.276
4 H 0.059 0.941
5 C -0.041 4.041
6 N -0.930 5.930
7 Si 0.967 3.033
8 H -0.273 1.273
9 H -0.290 1.290
10 H -0.279 1.279
11 C 0.167 3.833
12 H 0.038 0.962
13 C -0.121 4.121
14 C -0.123 4.123
15 C 0.105 3.895
16 N -0.605 5.605
17 C 0.510 3.490
18 O -0.587 6.587
19 C -0.105 4.105
20 H 0.116 0.884
21 C -0.104 4.104
22 C -0.122 4.122
23 C 0.103 3.897
24 N -0.623 5.623
25 C 0.703 3.297
26 N -0.845 5.845
27 O -0.641 6.641
28 C 0.148 3.852
29 C 0.116 3.884
30 H 0.005 0.995
31 H 0.011 0.989
32 H 0.039 0.961
33 H 0.250 0.750
34 H 0.055 0.945
35 H 0.067 0.933
36 H 0.054 0.946
37 H 0.105 0.895
38 H 0.105 0.895
39 H 0.089 0.911
40 H 0.066 0.934
41 H 0.060 0.940
42 H 0.080 0.920
43 H 0.106 0.894
44 H 0.115 0.885
45 H 0.076 0.924
46 H 0.421 0.579
47 H 0.412 0.588
48 H 0.059 0.941
49 H 0.082 0.918
50 H 0.062 0.938
51 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.872 -29.646 1.228 30.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.329 5.329
3 C -0.406 4.406
4 H 0.076 0.924
5 C -0.237 4.237
6 N -0.575 5.575
7 Si 0.795 3.205
8 H -0.199 1.199
9 H -0.216 1.216
10 H -0.205 1.205
11 C 0.060 3.940
12 H 0.057 0.943
13 C -0.160 4.160
14 C -0.161 4.161
15 C -0.017 4.017
16 N -0.337 5.337
17 C 0.299 3.701
18 O -0.467 6.467
19 C -0.128 4.128
20 H 0.134 0.866
21 C -0.143 4.143
22 C -0.160 4.160
23 C -0.019 4.019
24 N -0.360 5.360
25 C 0.403 3.597
26 N -0.417 5.417
27 O -0.523 6.523
28 C 0.023 3.977
29 C -0.009 4.009
30 H 0.024 0.976
31 H 0.030 0.970
32 H 0.057 0.943
33 H 0.060 0.940
34 H 0.073 0.927
35 H 0.086 0.914
36 H 0.073 0.927
37 H 0.123 0.877
38 H 0.123 0.877
39 H 0.107 0.893
40 H 0.085 0.915
41 H 0.079 0.921
42 H 0.099 0.901
43 H 0.124 0.876
44 H 0.133 0.867
45 H 0.095 0.905
46 H 0.254 0.746
47 H 0.246 0.754
48 H 0.078 0.922
49 H 0.100 0.900
50 H 0.080 0.920
51 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 7.874 -28.641 1.204 29.728
hybrid contribution 0.238 1.552 0.338 1.606
sum 8.112 -27.089 1.543 28.319
Atomic orbital electron populations
1.20562 0.82869 0.96208 0.97568 1.43994 1.01942 1.00817 1.86111
1.19362 1.05404 0.89342 1.26506 0.92367 1.26074 0.98594 1.02668
0.96410 1.70150 1.23385 1.30197 1.33722 0.85361 0.77976 0.79407
0.77788 1.19880 1.21555 1.20541 1.20868 0.94653 0.85447 0.93070
0.94313 1.21909 1.00581 0.96026 0.97482 1.21862 0.99900 0.95637
0.98716 1.22059 1.03242 0.93634 0.82725 1.48393 1.48411 1.18103
1.18828 1.21198 0.77685 0.89896 0.81313 1.90688 1.59880 1.59617
1.36472 1.21777 0.97831 0.91772 1.01386 0.86564 1.21418 1.02467
0.97438 0.92936 1.21906 0.95842 0.94758 1.03509 1.22023 0.98255
0.98874 0.82730 1.47183 1.63764 1.16586 1.08458 1.16062 0.77994
0.82615 0.83031 1.42926 1.72002 1.11497 1.15264 1.90959 1.64194
1.66630 1.30480 1.21151 0.91433 0.83262 1.01878 1.22047 0.96356
0.82752 0.99731 0.97644 0.97031 0.94310 0.94048 0.92662 0.91393
0.92691 0.87694 0.87701 0.89252 0.91510 0.92089 0.90114 0.87594
0.86706 0.90546 0.74589 0.75396 0.92230 0.89951 0.91980 0.93762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 8.66 7.97 127.77 1.02 9.68 16
2 N -0.61 -31.75 2.78 -701.54 -1.95 -33.70 16
3 C -0.28 -16.05 9.47 84.04 0.80 -15.25 16
4 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16
5 C -0.04 -2.40 5.26 84.86 0.45 -1.95 16
6 N -0.93 -57.04 11.02 21.65 0.24 -56.80 16
7 Si 0.97 47.12 29.56 68.60 2.03 49.14 16
8 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16
9 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16
11 C 0.17 7.28 2.75 45.21 0.12 7.40 16
12 H 0.04 1.86 7.89 -2.39 -0.02 1.84 16
13 C -0.12 -4.02 5.13 30.62 0.16 -3.86 16
14 C -0.12 -3.08 6.08 30.68 0.19 -2.89 16
15 C 0.10 2.40 6.14 86.37 0.53 2.93 16
16 N -0.61 -19.43 2.97 -818.05 -2.43 -21.86 16
17 C 0.51 16.58 6.69 87.66 0.59 17.17 16
18 O -0.59 -24.90 15.71 -3.04 -0.05 -24.95 16
19 C -0.11 -2.26 1.87 -11.32 -0.02 -2.28 16
20 H 0.12 1.99 6.23 -2.38 -0.01 1.98 16
21 C -0.10 -1.84 4.79 30.62 0.15 -1.69 16
22 C -0.12 -1.00 6.08 30.68 0.19 -0.82 16
23 C 0.10 0.82 6.43 86.36 0.56 1.38 16
24 N -0.62 -10.16 2.97 -836.06 -2.48 -12.64 16
25 C 0.70 13.36 8.57 179.06 1.53 14.90 16
26 N -0.85 -7.12 8.79 -184.75 -1.62 -8.75 16
27 O -0.64 -18.99 16.61 -3.99 -0.07 -19.06 16
28 C 0.15 3.34 5.64 86.51 0.49 3.83 16
29 C 0.12 4.81 5.82 86.51 0.50 5.32 16
30 H 0.01 0.29 7.18 -2.39 -0.02 0.28 16
31 H 0.01 0.59 7.84 -2.38 -0.02 0.58 16
32 H 0.04 1.61 6.46 -2.39 -0.02 1.60 16
33 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16
34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
35 H 0.07 2.14 6.72 -2.39 -0.02 2.12 16
36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
38 H 0.10 1.93 5.37 -2.39 -0.01 1.92 16
39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16
40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
41 H 0.06 1.31 7.90 -2.39 -0.02 1.29 16
42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16
43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16
44 H 0.12 0.07 5.57 -2.39 -0.01 0.06 16
45 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16
46 H 0.42 2.80 8.93 -92.71 -0.83 1.98 16
47 H 0.41 0.56 6.29 -92.70 -0.58 -0.02 16
48 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
49 H 0.08 2.18 6.82 -2.39 -0.02 2.16 16
50 H 0.06 2.52 7.53 -2.38 -0.02 2.51 16
51 H 0.04 2.24 7.00 -2.39 -0.02 2.23 16
Total: -1.00 -83.89 387.55 0.46 -83.43
By element:
Atomic # 1 Polarization: 11.79 SS G_CDS: -0.46 Total: 11.33 kcal
Atomic # 6 Polarization: 26.61 SS G_CDS: 7.24 Total: 33.85 kcal
Atomic # 7 Polarization: -125.51 SS G_CDS: -8.24 Total: -133.75 kcal
Atomic # 8 Polarization: -43.89 SS G_CDS: -0.11 Total: -44.00 kcal
Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal
Total: -83.89 0.46 -83.43 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027483693.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.524 kcal
(2) G-P(sol) polarization free energy of solvation -83.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.364 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.431 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.54 seconds