Wall clock time and date at job start Tue Mar 31 2020 20:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99707 * 2 1 4 4 H 1.07993 * 119.99857 * 197.50522 * 3 2 1 5 5 C 1.38816 * 120.00094 * 17.50971 * 3 2 1 6 6 N 1.31624 * 119.99781 * 16.32841 * 5 3 2 7 7 Si 1.86792 * 120.00013 * 196.33302 * 5 3 2 8 8 H 1.48498 * 109.47773 * 94.98787 * 7 5 3 9 9 H 1.48502 * 109.47371 * 214.98749 * 7 5 3 10 10 H 1.48504 * 109.47397 * 334.98518 * 7 5 3 11 11 C 1.46495 * 120.00061 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.49594 * 179.97438 * 11 2 1 13 13 C 1.53036 * 109.50066 * 59.83604 * 11 2 1 14 14 C 1.53040 * 109.53892 * 178.68347 * 13 11 2 15 15 C 1.52762 * 109.38253 * 61.24320 * 14 13 11 16 16 N 1.46931 * 109.00591 * 305.58570 * 15 14 13 17 17 C 1.34778 * 120.62839 * 233.58866 * 16 15 14 18 18 O 1.21283 * 119.99494 * 174.71488 * 17 16 15 19 19 C 1.50697 * 120.00147 * 354.70769 * 17 16 15 20 20 H 1.08999 * 109.49841 * 326.02724 * 19 17 16 21 21 C 1.53047 * 109.52215 * 86.10822 * 19 17 16 22 22 C 1.53036 * 109.53631 * 181.33279 * 21 19 17 23 23 C 1.53619 * 109.24258 * 298.50861 * 22 21 19 24 24 N 1.46924 * 108.54554 * 54.85850 * 23 22 21 25 25 C 1.34777 * 120.63367 * 126.36674 * 24 23 22 26 26 N 1.34784 * 119.99606 * 354.74517 * 25 24 23 27 27 O 1.21587 * 120.00429 * 174.74688 * 25 24 23 28 28 C 1.46925 * 118.73974 * 306.09712 * 24 23 22 29 29 C 1.46924 * 118.73433 * 53.31323 * 16 15 14 30 30 H 1.08998 * 109.46949 * 274.08543 * 1 2 3 31 31 H 1.08997 * 109.47310 * 34.09417 * 1 2 3 32 32 H 1.09008 * 109.47373 * 154.08890 * 1 2 3 33 33 H 0.97007 * 119.99504 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.46144 * 298.70186 * 13 11 2 35 35 H 1.09003 * 109.46199 * 58.66375 * 13 11 2 36 36 H 1.09008 * 109.49897 * 181.31818 * 14 13 11 37 37 H 1.08993 * 109.49827 * 301.40969 * 14 13 11 38 38 H 1.09004 * 109.50707 * 185.70675 * 15 14 13 39 39 H 1.08996 * 109.43787 * 65.42386 * 15 14 13 40 40 H 1.08999 * 109.45561 * 301.35302 * 21 19 17 41 41 H 1.09002 * 109.45846 * 61.32228 * 21 19 17 42 42 H 1.09004 * 109.50256 * 58.58659 * 22 21 19 43 43 H 1.09005 * 109.49440 * 178.68322 * 22 21 19 44 44 H 1.08997 * 109.74316 * 295.12012 * 23 22 21 45 45 H 1.09004 * 109.66762 * 174.55018 * 23 22 21 46 46 H 0.96991 * 120.00093 * 4.98800 * 26 25 24 47 47 H 0.96997 * 119.99284 * 184.98617 * 26 25 24 48 48 H 1.09000 * 109.59117 * 173.64477 * 28 24 23 49 49 H 1.09003 * 109.58320 * 293.93164 * 28 24 23 50 50 H 1.08995 * 109.58932 * 66.43129 * 29 16 15 51 51 H 1.09010 * 109.57938 * 186.71312 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1921 1.2076 -0.2813 5 6 1.5038 2.3602 0.3617 6 7 0.3557 2.3091 1.0034 7 14 2.2639 4.0130 -0.0623 8 1 1.6909 4.5085 -1.3396 9 1 1.9713 4.9851 1.0215 10 1 3.7340 3.8595 -0.2060 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8252 -2.0730 -1.2482 14 6 2.6146 -3.3840 -1.2664 15 6 2.2541 -4.2099 -0.0329 16 7 2.4683 -3.3929 1.1694 17 6 3.2420 -3.8434 2.1768 18 8 3.4892 -3.1226 3.1204 19 6 3.7997 -5.2426 2.1310 20 1 3.0848 -5.9033 1.6408 21 6 5.1153 -5.2433 1.3490 22 6 5.6651 -6.6695 1.2737 23 6 5.9478 -7.1788 2.6952 24 7 4.7201 -7.0471 3.4915 25 6 4.2138 -8.1064 4.1532 26 7 4.7724 -9.3239 4.0041 27 8 3.2531 -7.9639 4.8847 28 6 4.0581 -5.7371 3.5577 29 6 1.8278 -2.0730 1.2497 30 1 -0.3633 0.0732 1.0250 31 1 -0.3634 0.8510 -0.5760 32 1 -0.3634 -0.9244 -0.4491 33 1 -0.0958 3.1297 1.2558 34 1 0.7575 -2.2922 -1.2337 35 1 2.0646 -1.4926 -2.1392 36 1 2.3664 -3.9456 -2.1671 37 1 3.6824 -3.1659 -1.2559 38 1 2.8877 -5.0959 0.0097 39 1 1.2076 -4.5091 -0.0898 40 1 4.9386 -4.8685 0.3408 41 1 5.8380 -4.6018 1.8534 42 1 4.9326 -7.3169 0.7916 43 1 6.5900 -6.6729 0.6967 44 1 6.7422 -6.5854 3.1477 45 1 6.2478 -8.2260 2.6568 46 1 5.5814 -9.4252 3.4786 47 1 4.3654 -10.0987 4.4222 48 1 3.1109 -5.8326 4.0885 49 1 4.7006 -5.0291 4.0813 50 1 0.7458 -2.1943 1.2995 51 1 2.1784 -1.5505 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027483696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:34 Heat of formation + Delta-G solvation = -34.655168 kcal Electronic energy + Delta-G solvation = -31078.281373 eV Core-core repulsion = 27013.420583 eV Total energy + Delta-G solvation = -4064.860790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.90107 -39.86836 -37.85195 -36.99996 -35.12539 -34.27328 -32.86494 -32.24173 -31.48216 -31.15455 -28.74501 -26.01694 -25.75856 -25.58576 -24.05519 -23.16434 -21.93248 -21.66169 -20.03117 -19.38862 -18.77697 -18.43225 -17.20175 -17.10850 -16.71744 -15.94551 -15.39892 -15.23263 -15.13112 -14.90212 -14.53322 -14.45683 -14.11260 -13.92566 -13.69291 -13.52332 -13.38330 -13.27807 -12.93488 -12.65461 -12.44645 -12.28173 -11.95037 -11.75317 -11.50405 -11.32231 -11.15949 -11.02288 -10.86531 -10.80462 -10.60629 -10.44704 -10.39164 -10.32453 -10.16051 -9.99621 -9.82750 -9.76149 -9.47928 -8.87579 -8.56817 -8.29515 -6.80409 -5.71364 -3.12262 2.42173 2.78754 2.92438 3.24355 3.40830 3.47151 3.48916 3.75372 4.28210 4.43971 4.50595 4.52752 4.63696 4.67947 4.88277 4.99912 5.07370 5.12462 5.19532 5.29793 5.38783 5.44111 5.46258 5.50030 5.52125 5.57186 5.67446 5.74472 5.84964 5.90126 5.96919 5.99090 6.10532 6.12912 6.22323 6.37486 6.45933 6.49828 6.60674 6.68013 6.78272 6.93142 6.98240 7.41765 7.54544 7.67491 7.71413 7.83800 8.32815 8.36816 8.41704 9.24299 9.88085 10.34560 11.34203 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002550 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.112580 B =10976.761980 C =11195.305695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.106 3.894 16 N -0.604 5.604 17 C 0.519 3.481 18 O -0.537 6.537 19 C -0.121 4.121 20 H 0.094 0.906 21 C -0.111 4.111 22 C -0.132 4.132 23 C 0.109 3.891 24 N -0.627 5.627 25 C 0.709 3.291 26 N -0.870 5.870 27 O -0.590 6.590 28 C 0.146 3.854 29 C 0.097 3.903 30 H 0.026 0.974 31 H 0.048 0.952 32 H -0.001 1.001 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.395 0.605 47 H 0.413 0.587 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -24.890 -3.072 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.017 4.017 16 N -0.337 5.337 17 C 0.305 3.695 18 O -0.414 6.414 19 C -0.143 4.143 20 H 0.112 0.888 21 C -0.149 4.149 22 C -0.170 4.170 23 C -0.015 4.015 24 N -0.365 5.365 25 C 0.408 3.592 26 N -0.440 5.440 27 O -0.467 6.467 28 C 0.023 3.977 29 C -0.027 4.027 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.225 0.775 47 H 0.245 0.755 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.079 0.921 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.368 -24.047 -2.043 26.267 hybrid contribution 0.491 0.528 -0.429 0.838 sum 10.859 -23.520 -2.472 26.023 Atomic orbital electron populations 1.20807 0.82441 0.95800 0.99240 1.43999 1.01952 1.00072 1.85436 1.19264 0.95537 0.84339 1.39138 0.91171 1.24921 0.97768 0.98232 0.98910 1.70122 1.17734 1.26414 1.40878 0.86219 0.78602 0.84051 0.77592 1.21608 1.21818 1.20503 1.20587 0.96388 0.86147 0.90792 0.91790 1.22090 0.99674 0.94929 1.00627 1.21826 1.01019 0.97359 0.96693 1.21689 1.01375 0.93686 0.84995 1.48272 1.48791 1.19228 1.17458 1.20276 0.78469 0.88326 0.82418 1.90723 1.58652 1.58029 1.33997 1.21682 0.98927 0.95084 0.98654 0.88756 1.21505 0.95476 0.97146 1.00757 1.21993 1.02062 0.96748 0.96206 1.21788 0.86865 1.01225 0.91579 1.47249 1.27778 1.09725 1.51762 1.15853 0.82299 0.80695 0.80322 1.43165 1.32638 1.08482 1.59736 1.90987 1.29795 1.84163 1.41799 1.21287 0.99857 0.81866 0.94700 1.22561 0.96693 0.81008 1.02407 0.95591 0.93296 0.98271 0.93754 0.92232 0.91671 0.91239 0.91795 0.90279 0.91599 0.90617 0.90617 0.91133 0.90055 0.90794 0.90442 0.77473 0.75516 0.88470 0.89912 0.92073 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 7.92 59.85 0.47 4.41 16 2 N -0.59 -14.69 2.82 -173.35 -0.49 -15.18 16 3 C -0.25 -6.98 9.65 -15.06 -0.15 -7.13 16 4 H 0.07 1.90 7.79 -52.49 -0.41 1.49 16 5 C 0.00 0.00 5.04 -17.43 -0.09 -0.09 16 6 N -0.91 -26.67 10.59 55.49 0.59 -26.08 16 7 Si 0.91 22.13 29.58 -169.99 -5.03 17.10 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.17 3.42 2.74 -67.81 -0.19 3.24 16 12 H 0.06 1.36 7.83 -51.93 -0.41 0.96 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.28 16 14 C -0.13 -1.53 6.06 -26.83 -0.16 -1.69 16 15 C 0.11 1.20 5.95 -3.93 -0.02 1.17 16 16 N -0.60 -9.23 2.98 -173.03 -0.52 -9.74 16 17 C 0.52 8.06 6.79 -10.99 -0.07 7.98 16 18 O -0.54 -10.68 15.42 5.55 0.09 -10.59 16 19 C -0.12 -1.33 1.80 -91.65 -0.17 -1.49 16 20 H 0.09 0.94 6.70 -51.93 -0.35 0.59 16 21 C -0.11 -0.92 4.91 -26.69 -0.13 -1.05 16 22 C -0.13 -0.70 6.10 -26.39 -0.16 -0.86 16 23 C 0.11 0.61 6.46 -3.49 -0.02 0.58 16 24 N -0.63 -5.95 2.97 -178.23 -0.53 -6.48 16 25 C 0.71 7.81 8.57 -86.91 -0.74 7.06 16 26 N -0.87 -5.30 8.79 27.64 0.24 -5.05 16 27 O -0.59 -9.44 16.61 5.29 0.09 -9.35 16 28 C 0.15 1.77 5.34 -3.71 -0.02 1.75 16 29 C 0.10 1.87 5.80 -3.71 -0.02 1.85 16 30 H 0.03 0.69 7.53 -51.93 -0.39 0.30 16 31 H 0.05 1.29 6.98 -51.93 -0.36 0.93 16 32 H 0.00 -0.02 6.45 -51.92 -0.33 -0.36 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.68 4.87 -51.93 -0.25 0.43 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.61 7.20 -51.93 -0.37 0.23 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.22 5.56 -51.93 -0.29 -0.07 16 46 H 0.39 1.19 6.29 -40.82 -0.26 0.93 16 47 H 0.41 2.09 8.93 -40.82 -0.36 1.72 16 48 H 0.10 1.42 7.03 -51.93 -0.37 1.05 16 49 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 50 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 51 H 0.09 2.10 7.00 -51.92 -0.36 1.74 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -35.78 384.89 -9.54 -45.32 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.17 Total: 0.79 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.61 Total: 13.45 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.70 Total: -62.53 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.17 Total: -19.95 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.78 -9.54 -45.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.668 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds