Wall clock time and date at job start Tue Mar 31 2020 20:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99707 * 2 1 4 4 H 1.07993 * 119.99857 * 197.50522 * 3 2 1 5 5 C 1.38816 * 120.00094 * 17.50971 * 3 2 1 6 6 N 1.31624 * 119.99781 * 16.32841 * 5 3 2 7 7 Si 1.86792 * 120.00013 * 196.33302 * 5 3 2 8 8 H 1.48498 * 109.47773 * 94.98787 * 7 5 3 9 9 H 1.48502 * 109.47371 * 214.98749 * 7 5 3 10 10 H 1.48504 * 109.47397 * 334.98518 * 7 5 3 11 11 C 1.46495 * 120.00061 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.49594 * 179.97438 * 11 2 1 13 13 C 1.53036 * 109.50066 * 59.83604 * 11 2 1 14 14 C 1.53040 * 109.53892 * 178.68347 * 13 11 2 15 15 C 1.52762 * 109.38253 * 61.24320 * 14 13 11 16 16 N 1.46931 * 109.00591 * 305.58570 * 15 14 13 17 17 C 1.34778 * 120.62839 * 233.58866 * 16 15 14 18 18 O 1.21283 * 119.99494 * 174.71488 * 17 16 15 19 19 C 1.50697 * 120.00147 * 354.70769 * 17 16 15 20 20 H 1.08999 * 109.49841 * 326.02724 * 19 17 16 21 21 C 1.53047 * 109.52215 * 86.10822 * 19 17 16 22 22 C 1.53036 * 109.53631 * 181.33279 * 21 19 17 23 23 C 1.53619 * 109.24258 * 298.50861 * 22 21 19 24 24 N 1.46924 * 108.54554 * 54.85850 * 23 22 21 25 25 C 1.34777 * 120.63367 * 126.36674 * 24 23 22 26 26 N 1.34784 * 119.99606 * 354.74517 * 25 24 23 27 27 O 1.21587 * 120.00429 * 174.74688 * 25 24 23 28 28 C 1.46925 * 118.73974 * 306.09712 * 24 23 22 29 29 C 1.46924 * 118.73433 * 53.31323 * 16 15 14 30 30 H 1.08998 * 109.46949 * 274.08543 * 1 2 3 31 31 H 1.08997 * 109.47310 * 34.09417 * 1 2 3 32 32 H 1.09008 * 109.47373 * 154.08890 * 1 2 3 33 33 H 0.97007 * 119.99504 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.46144 * 298.70186 * 13 11 2 35 35 H 1.09003 * 109.46199 * 58.66375 * 13 11 2 36 36 H 1.09008 * 109.49897 * 181.31818 * 14 13 11 37 37 H 1.08993 * 109.49827 * 301.40969 * 14 13 11 38 38 H 1.09004 * 109.50707 * 185.70675 * 15 14 13 39 39 H 1.08996 * 109.43787 * 65.42386 * 15 14 13 40 40 H 1.08999 * 109.45561 * 301.35302 * 21 19 17 41 41 H 1.09002 * 109.45846 * 61.32228 * 21 19 17 42 42 H 1.09004 * 109.50256 * 58.58659 * 22 21 19 43 43 H 1.09005 * 109.49440 * 178.68322 * 22 21 19 44 44 H 1.08997 * 109.74316 * 295.12012 * 23 22 21 45 45 H 1.09004 * 109.66762 * 174.55018 * 23 22 21 46 46 H 0.96991 * 120.00093 * 4.98800 * 26 25 24 47 47 H 0.96997 * 119.99284 * 184.98617 * 26 25 24 48 48 H 1.09000 * 109.59117 * 173.64477 * 28 24 23 49 49 H 1.09003 * 109.58320 * 293.93164 * 28 24 23 50 50 H 1.08995 * 109.58932 * 66.43129 * 29 16 15 51 51 H 1.09010 * 109.57938 * 186.71312 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1921 1.2076 -0.2813 5 6 1.5038 2.3602 0.3617 6 7 0.3557 2.3091 1.0034 7 14 2.2639 4.0130 -0.0623 8 1 1.6909 4.5085 -1.3396 9 1 1.9713 4.9851 1.0215 10 1 3.7340 3.8595 -0.2060 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8252 -2.0730 -1.2482 14 6 2.6146 -3.3840 -1.2664 15 6 2.2541 -4.2099 -0.0329 16 7 2.4683 -3.3929 1.1694 17 6 3.2420 -3.8434 2.1768 18 8 3.4892 -3.1226 3.1204 19 6 3.7997 -5.2426 2.1310 20 1 3.0848 -5.9033 1.6408 21 6 5.1153 -5.2433 1.3490 22 6 5.6651 -6.6695 1.2737 23 6 5.9478 -7.1788 2.6952 24 7 4.7201 -7.0471 3.4915 25 6 4.2138 -8.1064 4.1532 26 7 4.7724 -9.3239 4.0041 27 8 3.2531 -7.9639 4.8847 28 6 4.0581 -5.7371 3.5577 29 6 1.8278 -2.0730 1.2497 30 1 -0.3633 0.0732 1.0250 31 1 -0.3634 0.8510 -0.5760 32 1 -0.3634 -0.9244 -0.4491 33 1 -0.0958 3.1297 1.2558 34 1 0.7575 -2.2922 -1.2337 35 1 2.0646 -1.4926 -2.1392 36 1 2.3664 -3.9456 -2.1671 37 1 3.6824 -3.1659 -1.2559 38 1 2.8877 -5.0959 0.0097 39 1 1.2076 -4.5091 -0.0898 40 1 4.9386 -4.8685 0.3408 41 1 5.8380 -4.6018 1.8534 42 1 4.9326 -7.3169 0.7916 43 1 6.5900 -6.6729 0.6967 44 1 6.7422 -6.5854 3.1477 45 1 6.2478 -8.2260 2.6568 46 1 5.5814 -9.4252 3.4786 47 1 4.3654 -10.0987 4.4222 48 1 3.1109 -5.8326 4.0885 49 1 4.7006 -5.0291 4.0813 50 1 0.7458 -2.1943 1.2995 51 1 2.1784 -1.5505 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027483696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:32 Heat of formation + Delta-G solvation = -61.462933 kcal Electronic energy + Delta-G solvation = -31079.443844 eV Core-core repulsion = 27013.420583 eV Total energy + Delta-G solvation = -4066.023262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.86953 -40.94564 -39.13960 -38.03673 -36.81952 -35.10946 -34.07883 -33.32031 -32.83952 -32.16180 -30.37407 -28.08511 -26.80235 -26.46300 -25.47261 -24.39275 -23.05847 -22.64531 -21.12550 -20.53130 -19.74714 -19.41555 -18.78111 -18.22828 -17.90452 -17.06878 -16.95915 -16.31665 -16.26688 -15.88695 -15.64612 -15.54829 -15.40687 -15.13301 -14.93754 -14.80185 -14.40695 -14.36762 -14.12301 -13.85190 -13.77854 -13.69446 -13.44731 -12.95897 -12.85970 -12.61180 -12.43409 -12.20268 -12.15600 -12.10720 -12.03065 -11.98152 -11.75559 -11.69172 -11.56827 -11.40437 -11.33505 -10.72583 -10.70826 -10.64292 -9.70528 -9.63771 -8.83374 -7.85845 -5.28949 1.44325 1.44887 1.51322 1.54632 1.66110 2.03917 2.13838 2.50094 3.20544 3.27056 3.45007 3.60102 3.70527 3.75585 3.95211 4.02232 4.03502 4.09963 4.14948 4.22470 4.27680 4.37381 4.49565 4.58915 4.62060 4.68928 4.72829 4.77804 4.81455 4.86791 4.89439 4.94556 5.02974 5.07366 5.12923 5.17315 5.26918 5.38591 5.42132 5.44211 5.49146 5.56693 5.60525 5.70415 5.83229 6.01676 6.28475 6.44925 6.92354 7.11393 7.14980 7.60535 7.85152 8.26040 9.18013 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002550 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.112580 B =10976.761980 C =11195.305695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.283 1.283 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.169 3.831 12 H 0.046 0.954 13 C -0.124 4.124 14 C -0.120 4.120 15 C 0.100 3.900 16 N -0.603 5.603 17 C 0.511 3.489 18 O -0.593 6.593 19 C -0.103 4.103 20 H 0.116 0.884 21 C -0.110 4.110 22 C -0.121 4.121 23 C 0.100 3.900 24 N -0.623 5.623 25 C 0.701 3.299 26 N -0.843 5.843 27 O -0.649 6.649 28 C 0.151 3.849 29 C 0.112 3.888 30 H -0.007 1.007 31 H 0.022 0.978 32 H 0.036 0.964 33 H 0.248 0.752 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.413 0.587 47 H 0.420 0.580 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.203 -28.469 -6.125 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.333 5.333 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.252 4.252 6 N -0.586 5.586 7 Si 0.798 3.202 8 H -0.209 1.209 9 H -0.224 1.224 10 H -0.194 1.194 11 C 0.061 3.939 12 H 0.064 0.936 13 C -0.163 4.163 14 C -0.158 4.158 15 C -0.021 4.021 16 N -0.335 5.335 17 C 0.300 3.700 18 O -0.473 6.473 19 C -0.125 4.125 20 H 0.134 0.866 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.022 4.022 24 N -0.360 5.360 25 C 0.401 3.599 26 N -0.415 5.415 27 O -0.531 6.531 28 C 0.026 3.974 29 C -0.013 4.013 30 H 0.012 0.988 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.129 0.871 44 H 0.094 0.906 45 H 0.132 0.868 46 H 0.247 0.753 47 H 0.254 0.746 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.640 -27.725 -5.175 30.907 hybrid contribution -0.130 1.576 0.567 1.680 sum 12.510 -26.149 -4.609 29.352 Atomic orbital electron populations 1.20497 0.82519 0.96367 0.97094 1.44243 1.02234 1.01150 1.85647 1.19582 0.95702 0.85752 1.38124 0.91226 1.25720 0.98552 1.01600 0.99351 1.70293 1.19202 1.26764 1.42388 0.85198 0.78271 0.79657 0.77035 1.20948 1.22448 1.19400 1.20764 0.94870 0.85085 0.93154 0.93565 1.21932 1.00528 0.96511 0.97322 1.21809 1.00417 0.95099 0.98503 1.22076 1.03267 0.94102 0.82681 1.48322 1.48125 1.17939 1.19157 1.21211 0.77596 0.89849 0.81359 1.90699 1.60561 1.59934 1.36139 1.21616 1.00848 0.91544 0.98500 0.86596 1.21575 0.93287 0.99532 1.00395 1.21990 1.03643 0.94220 0.96082 1.22165 0.84954 1.03722 0.91326 1.47203 1.28648 1.08158 1.51956 1.16117 0.81898 0.81967 0.79946 1.42895 1.32712 1.06877 1.59033 1.90952 1.32599 1.85206 1.44353 1.20956 0.98191 0.83152 0.95089 1.21987 0.96294 0.83144 0.99904 0.98835 0.95928 0.94615 0.94314 0.92047 0.92330 0.87115 0.91412 0.86404 0.90263 0.89363 0.92141 0.89696 0.87101 0.90553 0.86841 0.75272 0.74650 0.91836 0.91937 0.92638 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 7.92 127.77 1.01 10.09 16 2 N -0.61 -31.22 2.82 -702.36 -1.98 -33.20 16 3 C -0.26 -14.86 9.65 84.03 0.81 -14.05 16 4 H 0.07 3.87 7.79 -2.91 -0.02 3.85 16 5 C -0.06 -3.34 5.04 84.86 0.43 -2.91 16 6 N -0.94 -57.67 10.59 21.65 0.23 -57.44 16 7 Si 0.97 46.65 29.58 68.60 2.03 48.68 16 8 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 9 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 C 0.17 6.90 2.74 45.07 0.12 7.03 16 12 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 13 C -0.12 -3.71 5.13 30.62 0.16 -3.56 16 14 C -0.12 -2.30 6.06 30.53 0.19 -2.12 16 15 C 0.10 1.88 5.95 86.22 0.51 2.39 16 16 N -0.60 -18.14 2.98 -819.72 -2.44 -20.58 16 17 C 0.51 16.14 6.79 87.66 0.60 16.74 16 18 O -0.59 -25.31 15.42 -3.04 -0.05 -25.36 16 19 C -0.10 -2.11 1.80 -11.46 -0.02 -2.13 16 20 H 0.12 1.90 6.70 -2.39 -0.02 1.89 16 21 C -0.11 -1.47 4.91 30.62 0.15 -1.32 16 22 C -0.12 -0.66 6.10 30.81 0.19 -0.47 16 23 C 0.10 0.73 6.46 86.51 0.56 1.29 16 24 N -0.62 -10.78 2.97 -836.06 -2.48 -13.26 16 25 C 0.70 14.54 8.57 179.05 1.53 16.07 16 26 N -0.84 -7.82 8.79 -184.74 -1.62 -9.44 16 27 O -0.65 -21.18 16.61 -3.99 -0.07 -21.25 16 28 C 0.15 3.73 5.34 86.36 0.46 4.19 16 29 C 0.11 4.50 5.80 86.36 0.50 5.01 16 30 H -0.01 -0.38 7.53 -2.39 -0.02 -0.40 16 31 H 0.02 1.22 6.98 -2.39 -0.02 1.20 16 32 H 0.04 1.50 6.45 -2.38 -0.02 1.48 16 33 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 34 H 0.06 1.83 6.71 -2.39 -0.02 1.81 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.38 4.87 -2.39 -0.01 1.36 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.00 7.20 -2.39 -0.02 0.99 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.11 0.01 5.56 -2.39 -0.01 0.00 16 46 H 0.41 0.68 6.29 -92.72 -0.58 0.10 16 47 H 0.42 3.18 8.93 -92.71 -0.83 2.35 16 48 H 0.06 1.99 7.03 -2.39 -0.02 1.98 16 49 H 0.06 1.77 7.69 -2.39 -0.02 1.75 16 50 H 0.06 2.26 7.51 -2.39 -0.02 2.25 16 51 H 0.04 2.11 7.00 -2.38 -0.02 2.09 16 Total: -1.00 -87.42 384.89 0.37 -87.05 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -0.45 Total: 8.55 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 7.20 Total: 36.25 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -8.30 Total: -133.92 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.11 Total: -46.61 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -87.42 0.37 -87.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.587 kcal (2) G-P(sol) polarization free energy of solvation -87.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds