Wall clock time and date at job start Tue Mar 31 2020 20:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99961 * 2 1 4 4 H 1.07998 * 119.99886 * 199.05113 * 3 2 1 5 5 C 1.38806 * 119.99736 * 19.04776 * 3 2 1 6 6 N 1.31621 * 120.00528 * 16.42023 * 5 3 2 7 7 Si 1.86806 * 119.99631 * 196.41515 * 5 3 2 8 8 H 1.48503 * 109.46942 * 94.99069 * 7 5 3 9 9 H 1.48500 * 109.47106 * 214.98481 * 7 5 3 10 10 H 1.48502 * 109.47360 * 334.98809 * 7 5 3 11 11 C 1.46502 * 120.00304 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.49881 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49975 * 300.16748 * 11 2 1 14 14 C 1.53031 * 109.54054 * 181.31437 * 13 11 2 15 15 C 1.53194 * 109.31350 * 298.63297 * 14 13 11 16 16 N 1.46923 * 108.77494 * 54.63628 * 15 14 13 17 17 C 1.34775 * 120.63634 * 126.41287 * 16 15 14 18 18 O 1.21276 * 120.00615 * 174.79940 * 17 16 15 19 19 C 1.50708 * 119.99408 * 354.79440 * 17 16 15 20 20 H 1.08999 * 109.49561 * 36.77426 * 19 17 16 21 21 C 1.53048 * 109.49298 * 156.83518 * 19 17 16 22 22 C 1.53035 * 109.53216 * 181.31805 * 21 19 17 23 23 C 1.53192 * 109.31369 * 298.63343 * 22 21 19 24 24 N 1.46920 * 108.77452 * 54.64168 * 23 22 21 25 25 C 1.34780 * 120.63396 * 126.41317 * 24 23 22 26 26 N 1.34781 * 119.99419 * 5.24654 * 25 24 23 27 27 O 1.21578 * 120.00196 * 185.24699 * 25 24 23 28 28 C 1.46929 * 118.73540 * 306.38832 * 24 23 22 29 29 C 1.46936 * 118.73779 * 306.39244 * 16 15 14 30 30 H 1.08999 * 109.47587 * 274.40947 * 1 2 3 31 31 H 1.08995 * 109.46996 * 34.41461 * 1 2 3 32 32 H 1.09007 * 109.46841 * 154.41128 * 1 2 3 33 33 H 0.96998 * 119.99858 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.45883 * 301.33677 * 13 11 2 35 35 H 1.09005 * 109.45859 * 61.30570 * 13 11 2 36 36 H 1.09003 * 109.49977 * 178.68451 * 14 13 11 37 37 H 1.08998 * 109.49843 * 58.58616 * 14 13 11 38 38 H 1.08999 * 109.58585 * 294.84558 * 15 14 13 39 39 H 1.08996 * 109.58896 * 174.42069 * 15 14 13 40 40 H 1.08999 * 109.45653 * 301.33892 * 21 19 17 41 41 H 1.08997 * 109.45585 * 61.31106 * 21 19 17 42 42 H 1.09003 * 109.50190 * 58.59146 * 22 21 19 43 43 H 1.09009 * 109.49493 * 178.68191 * 22 21 19 44 44 H 1.09005 * 109.58358 * 174.42826 * 23 22 21 45 45 H 1.08999 * 109.58659 * 294.70496 * 23 22 21 46 46 H 0.96995 * 120.00375 * 354.97020 * 26 25 24 47 47 H 0.97000 * 119.99033 * 174.97246 * 26 25 24 48 48 H 1.09002 * 109.58442 * 293.82210 * 28 24 23 49 49 H 1.09002 * 109.58252 * 173.40230 * 28 24 23 50 50 H 1.08998 * 109.58681 * 173.39519 * 29 16 15 51 51 H 1.08999 * 109.58373 * 293.81906 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1853 1.2115 -0.3053 5 6 1.5126 2.3551 0.3923 6 7 0.3806 2.2952 1.0613 7 14 2.2619 4.0136 -0.0291 8 1 1.6575 4.5249 -1.2855 9 1 1.9956 4.9717 1.0738 10 1 3.7280 3.8627 -0.2106 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8252 -2.0731 1.2482 14 6 2.6145 -3.3840 1.2664 15 6 2.2496 -4.2124 0.0305 16 7 2.4683 -3.3930 -1.1693 17 6 3.2413 -3.8437 -2.1772 18 8 3.3384 -3.2010 -3.2011 19 6 3.9850 -5.1464 -2.0318 20 1 3.3719 -5.8551 -1.4751 21 6 4.2928 -5.7163 -3.4185 22 6 5.0190 -7.0554 -3.2717 23 6 6.3437 -6.8352 -2.5345 24 7 6.0690 -6.1551 -1.2614 25 6 6.5163 -6.6683 -0.0982 26 7 7.3114 -7.7566 -0.1033 27 8 6.2025 -6.1496 0.9557 28 6 5.2978 -4.9046 -1.2806 29 6 1.8279 -2.0730 -1.2497 30 1 -0.3634 0.0790 1.0246 31 1 -0.3633 0.8478 -0.5808 32 1 -0.3633 -0.9269 -0.4439 33 1 -0.0647 3.1123 1.3351 34 1 2.0645 -1.4927 2.1392 35 1 0.7575 -2.2924 1.2336 36 1 2.3662 -3.9457 2.1670 37 1 3.6824 -3.1659 1.2560 38 1 1.2019 -4.5081 0.0851 39 1 2.8802 -5.1003 -0.0135 40 1 3.3613 -5.8662 -3.9643 41 1 4.9260 -5.0180 -3.9656 42 1 4.3966 -7.7464 -2.7031 43 1 5.2171 -7.4720 -4.2594 44 1 6.8179 -7.7972 -2.3400 45 1 7.0038 -6.2193 -3.1453 46 1 7.5025 -8.2137 -0.9372 47 1 7.6925 -8.0825 0.7270 48 1 5.8718 -4.1292 -1.7880 49 1 5.0821 -4.5927 -0.2587 50 1 2.1804 -1.5494 -2.1384 51 1 0.7459 -2.1943 -1.2996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027483697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:37 Heat of formation + Delta-G solvation = -34.478667 kcal Electronic energy + Delta-G solvation = -31370.571542 eV Core-core repulsion = 27305.718406 eV Total energy + Delta-G solvation = -4064.853136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.93496 -39.85322 -37.86444 -36.96926 -35.08872 -34.28631 -32.67323 -32.39059 -31.51133 -31.12688 -28.69138 -26.00499 -25.79717 -25.45646 -24.04285 -23.28319 -21.89316 -21.52064 -20.03671 -19.34871 -18.73562 -18.44655 -17.25056 -17.08523 -16.67072 -15.97531 -15.52744 -15.24824 -15.09467 -14.89971 -14.57803 -14.29585 -14.03146 -13.93272 -13.66483 -13.60190 -13.28506 -13.21196 -12.98452 -12.64032 -12.48141 -12.22993 -11.94991 -11.75885 -11.40626 -11.26377 -10.99884 -10.96108 -10.81443 -10.79781 -10.54803 -10.45997 -10.36050 -10.25716 -10.08729 -10.00025 -9.82115 -9.74681 -9.50515 -8.93284 -8.57250 -8.28844 -6.75669 -5.68983 -3.10927 2.34444 2.78536 2.94281 3.19125 3.43086 3.49753 3.51341 3.74653 4.29473 4.44130 4.52317 4.54123 4.67246 4.70288 4.89324 4.98941 5.12219 5.22991 5.25685 5.36645 5.38839 5.45491 5.50029 5.50684 5.57012 5.60874 5.68666 5.82353 5.85690 5.93838 6.03080 6.05702 6.08373 6.23826 6.29071 6.42696 6.45337 6.57117 6.59721 6.70309 6.82175 6.98706 7.05176 7.42411 7.51990 7.65205 7.74349 7.86172 8.31635 8.33960 8.42756 9.27002 9.90734 10.37734 11.36411 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.002832 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.441609 B = 9885.486491 C =10146.714842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.132 4.132 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.602 5.602 17 C 0.519 3.481 18 O -0.540 6.540 19 C -0.123 4.123 20 H 0.096 0.904 21 C -0.102 4.102 22 C -0.134 4.134 23 C 0.109 3.891 24 N -0.626 5.626 25 C 0.709 3.291 26 N -0.869 5.869 27 O -0.587 6.587 28 C 0.141 3.859 29 C 0.097 3.903 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.002 1.002 33 H 0.251 0.749 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.395 0.605 47 H 0.414 0.586 48 H 0.075 0.925 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.381 -25.244 -6.191 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.018 4.018 16 N -0.335 5.335 17 C 0.305 3.695 18 O -0.417 6.417 19 C -0.145 4.145 20 H 0.114 0.886 21 C -0.140 4.140 22 C -0.172 4.172 23 C -0.014 4.014 24 N -0.365 5.365 25 C 0.408 3.592 26 N -0.440 5.440 27 O -0.464 6.464 28 C 0.017 3.983 29 C -0.027 4.027 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.225 0.775 47 H 0.246 0.754 48 H 0.093 0.907 49 H 0.121 0.879 50 H 0.107 0.893 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.013 -24.245 -6.051 26.920 hybrid contribution 0.437 0.482 -0.136 0.665 sum 10.450 -23.763 -6.187 26.686 Atomic orbital electron populations 1.20785 0.82560 0.95573 0.99319 1.43929 1.01864 1.00070 1.85603 1.19273 0.96286 0.84641 1.38018 0.91218 1.24903 0.97905 0.98195 0.98725 1.70109 1.18905 1.26530 1.39685 0.86245 0.78677 0.84131 0.77584 1.21568 1.21885 1.20455 1.20571 0.96406 0.86193 0.90800 0.91720 1.22121 0.99371 0.94768 1.00902 1.21917 1.01220 0.97254 0.96594 1.21830 1.01269 0.93728 0.84949 1.48229 1.48611 1.18915 1.17732 1.20274 0.79321 0.86709 0.83206 1.90691 1.64021 1.58724 1.28296 1.21739 0.97348 0.96240 0.99206 0.88606 1.21362 1.01590 0.96064 0.94960 1.21946 0.96321 0.98065 1.00907 1.21695 0.97605 0.97023 0.85081 1.47216 1.57726 1.26335 1.05177 1.15848 0.79025 0.80540 0.83756 1.43164 1.55014 1.31935 1.13852 1.90996 1.62561 1.63126 1.29700 1.21364 0.89686 0.84570 1.02675 1.22434 0.96954 0.81306 1.01960 0.95342 0.93679 0.98306 0.93838 0.91461 0.92522 0.91249 0.91577 0.91492 0.90137 0.91029 0.90304 0.91350 0.90113 0.90463 0.90843 0.77482 0.75442 0.90676 0.87885 0.89257 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.04 59.85 0.48 4.48 16 2 N -0.59 -14.94 2.82 -173.35 -0.49 -15.43 16 3 C -0.25 -7.07 9.62 -15.06 -0.14 -7.22 16 4 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 5 C 0.00 0.02 5.03 -17.43 -0.09 -0.07 16 6 N -0.91 -26.69 10.68 55.49 0.59 -26.10 16 7 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 8 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.17 3.52 2.74 -67.81 -0.19 3.33 16 12 H 0.06 1.42 7.84 -51.93 -0.41 1.02 16 13 C -0.13 -2.38 5.14 -26.69 -0.14 -2.52 16 14 C -0.13 -1.86 6.08 -26.61 -0.16 -2.02 16 15 C 0.11 1.34 6.18 -3.71 -0.02 1.31 16 16 N -0.60 -9.25 2.97 -172.76 -0.51 -9.76 16 17 C 0.52 7.81 6.82 -10.98 -0.07 7.74 16 18 O -0.54 -10.08 15.54 5.56 0.09 -9.99 16 19 C -0.12 -1.34 1.82 -91.65 -0.17 -1.50 16 20 H 0.10 0.95 6.35 -51.93 -0.33 0.62 16 21 C -0.10 -0.93 4.65 -26.69 -0.12 -1.05 16 22 C -0.13 -0.77 6.08 -26.61 -0.16 -0.94 16 23 C 0.11 0.61 6.39 -3.71 -0.02 0.58 16 24 N -0.63 -5.68 2.97 -178.50 -0.53 -6.21 16 25 C 0.71 7.48 8.57 -86.91 -0.74 6.73 16 26 N -0.87 -5.16 8.78 27.63 0.24 -4.92 16 27 O -0.59 -8.92 16.60 5.30 0.09 -8.83 16 28 C 0.14 1.58 5.60 -3.71 -0.02 1.56 16 29 C 0.10 1.81 5.77 -3.71 -0.02 1.79 16 30 H 0.03 0.75 7.47 -51.93 -0.39 0.37 16 31 H 0.04 1.21 7.11 -51.93 -0.37 0.84 16 32 H 0.00 -0.03 6.36 -51.92 -0.33 -0.36 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.88 5.09 -51.93 -0.26 0.62 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.08 0.22 5.65 -51.93 -0.29 -0.08 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.39 1.16 6.32 -40.82 -0.26 0.90 16 47 H 0.41 2.06 8.93 -40.82 -0.36 1.69 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.10 1.35 6.56 -51.93 -0.34 1.01 16 50 H 0.09 1.88 7.04 -51.93 -0.37 1.52 16 51 H 0.06 1.18 6.50 -51.93 -0.34 0.84 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -35.09 386.07 -9.54 -44.64 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.21 Total: 1.22 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -1.60 Total: 12.21 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.70 Total: -62.42 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.17 Total: -18.82 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.09 -9.54 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.158 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds