Wall clock time and date at job start Tue Mar 31 2020 20:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99961 * 2 1 4 4 H 1.07998 * 119.99886 * 199.05113 * 3 2 1 5 5 C 1.38806 * 119.99736 * 19.04776 * 3 2 1 6 6 N 1.31621 * 120.00528 * 16.42023 * 5 3 2 7 7 Si 1.86806 * 119.99631 * 196.41515 * 5 3 2 8 8 H 1.48503 * 109.46942 * 94.99069 * 7 5 3 9 9 H 1.48500 * 109.47106 * 214.98481 * 7 5 3 10 10 H 1.48502 * 109.47360 * 334.98809 * 7 5 3 11 11 C 1.46502 * 120.00304 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.49881 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49975 * 300.16748 * 11 2 1 14 14 C 1.53031 * 109.54054 * 181.31437 * 13 11 2 15 15 C 1.53194 * 109.31350 * 298.63297 * 14 13 11 16 16 N 1.46923 * 108.77494 * 54.63628 * 15 14 13 17 17 C 1.34775 * 120.63634 * 126.41287 * 16 15 14 18 18 O 1.21276 * 120.00615 * 174.79940 * 17 16 15 19 19 C 1.50708 * 119.99408 * 354.79440 * 17 16 15 20 20 H 1.08999 * 109.49561 * 36.77426 * 19 17 16 21 21 C 1.53048 * 109.49298 * 156.83518 * 19 17 16 22 22 C 1.53035 * 109.53216 * 181.31805 * 21 19 17 23 23 C 1.53192 * 109.31369 * 298.63343 * 22 21 19 24 24 N 1.46920 * 108.77452 * 54.64168 * 23 22 21 25 25 C 1.34780 * 120.63396 * 126.41317 * 24 23 22 26 26 N 1.34781 * 119.99419 * 5.24654 * 25 24 23 27 27 O 1.21578 * 120.00196 * 185.24699 * 25 24 23 28 28 C 1.46929 * 118.73540 * 306.38832 * 24 23 22 29 29 C 1.46936 * 118.73779 * 306.39244 * 16 15 14 30 30 H 1.08999 * 109.47587 * 274.40947 * 1 2 3 31 31 H 1.08995 * 109.46996 * 34.41461 * 1 2 3 32 32 H 1.09007 * 109.46841 * 154.41128 * 1 2 3 33 33 H 0.96998 * 119.99858 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.45883 * 301.33677 * 13 11 2 35 35 H 1.09005 * 109.45859 * 61.30570 * 13 11 2 36 36 H 1.09003 * 109.49977 * 178.68451 * 14 13 11 37 37 H 1.08998 * 109.49843 * 58.58616 * 14 13 11 38 38 H 1.08999 * 109.58585 * 294.84558 * 15 14 13 39 39 H 1.08996 * 109.58896 * 174.42069 * 15 14 13 40 40 H 1.08999 * 109.45653 * 301.33892 * 21 19 17 41 41 H 1.08997 * 109.45585 * 61.31106 * 21 19 17 42 42 H 1.09003 * 109.50190 * 58.59146 * 22 21 19 43 43 H 1.09009 * 109.49493 * 178.68191 * 22 21 19 44 44 H 1.09005 * 109.58358 * 174.42826 * 23 22 21 45 45 H 1.08999 * 109.58659 * 294.70496 * 23 22 21 46 46 H 0.96995 * 120.00375 * 354.97020 * 26 25 24 47 47 H 0.97000 * 119.99033 * 174.97246 * 26 25 24 48 48 H 1.09002 * 109.58442 * 293.82210 * 28 24 23 49 49 H 1.09002 * 109.58252 * 173.40230 * 28 24 23 50 50 H 1.08998 * 109.58681 * 173.39519 * 29 16 15 51 51 H 1.08999 * 109.58373 * 293.81906 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1853 1.2115 -0.3053 5 6 1.5126 2.3551 0.3923 6 7 0.3806 2.2952 1.0613 7 14 2.2619 4.0136 -0.0291 8 1 1.6575 4.5249 -1.2855 9 1 1.9956 4.9717 1.0738 10 1 3.7280 3.8627 -0.2106 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8252 -2.0731 1.2482 14 6 2.6145 -3.3840 1.2664 15 6 2.2496 -4.2124 0.0305 16 7 2.4683 -3.3930 -1.1693 17 6 3.2413 -3.8437 -2.1772 18 8 3.3384 -3.2010 -3.2011 19 6 3.9850 -5.1464 -2.0318 20 1 3.3719 -5.8551 -1.4751 21 6 4.2928 -5.7163 -3.4185 22 6 5.0190 -7.0554 -3.2717 23 6 6.3437 -6.8352 -2.5345 24 7 6.0690 -6.1551 -1.2614 25 6 6.5163 -6.6683 -0.0982 26 7 7.3114 -7.7566 -0.1033 27 8 6.2025 -6.1496 0.9557 28 6 5.2978 -4.9046 -1.2806 29 6 1.8279 -2.0730 -1.2497 30 1 -0.3634 0.0790 1.0246 31 1 -0.3633 0.8478 -0.5808 32 1 -0.3633 -0.9269 -0.4439 33 1 -0.0647 3.1123 1.3351 34 1 2.0645 -1.4927 2.1392 35 1 0.7575 -2.2924 1.2336 36 1 2.3662 -3.9457 2.1670 37 1 3.6824 -3.1659 1.2560 38 1 1.2019 -4.5081 0.0851 39 1 2.8802 -5.1003 -0.0135 40 1 3.3613 -5.8662 -3.9643 41 1 4.9260 -5.0180 -3.9656 42 1 4.3966 -7.7464 -2.7031 43 1 5.2171 -7.4720 -4.2594 44 1 6.8179 -7.7972 -2.3400 45 1 7.0038 -6.2193 -3.1453 46 1 7.5025 -8.2137 -0.9372 47 1 7.6925 -8.0825 0.7270 48 1 5.8718 -4.1292 -1.7880 49 1 5.0821 -4.5927 -0.2587 50 1 2.1804 -1.5494 -2.1384 51 1 0.7459 -2.1943 -1.2996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027483697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:36 Heat of formation + Delta-G solvation = -59.654109 kcal Electronic energy + Delta-G solvation = -31371.663231 eV Core-core repulsion = 27305.718406 eV Total energy + Delta-G solvation = -4065.944825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88366 -40.91236 -39.16992 -38.00048 -36.81984 -35.07253 -34.00925 -33.34301 -32.89491 -32.26962 -30.33991 -28.08151 -26.79842 -26.41748 -25.49547 -24.50815 -23.08784 -22.64006 -21.03859 -20.55486 -19.76228 -19.38347 -18.79142 -18.24974 -17.88489 -17.14784 -16.87963 -16.51164 -16.10687 -15.85761 -15.67818 -15.63634 -15.35272 -15.26369 -14.87607 -14.75902 -14.51549 -14.31961 -14.12146 -13.92770 -13.75328 -13.69585 -13.50418 -12.93682 -12.83793 -12.61824 -12.44323 -12.31250 -12.15377 -12.03444 -11.96977 -11.92707 -11.81289 -11.76468 -11.53669 -11.41684 -11.30856 -10.79561 -10.67304 -10.64808 -9.74886 -9.63599 -8.81605 -7.86028 -5.30154 1.39154 1.43598 1.45047 1.53959 1.80626 1.98452 2.15639 2.49512 3.22369 3.26347 3.43000 3.58255 3.68665 3.77596 3.91788 4.00224 4.01857 4.06671 4.09874 4.20727 4.24420 4.33957 4.47880 4.55128 4.57752 4.66863 4.72266 4.74026 4.75780 4.85072 4.88992 4.90487 4.99853 5.05542 5.11880 5.14332 5.26657 5.37823 5.41039 5.42767 5.45477 5.49928 5.61570 5.70064 5.84414 6.04433 6.28592 6.41660 6.93035 7.10169 7.13113 7.63245 7.84161 8.25661 9.17241 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.002832 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.441609 B = 9885.486491 C =10146.714842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.266 4.266 4 H 0.063 0.937 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.272 1.272 11 C 0.169 3.831 12 H 0.043 0.957 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.107 3.893 16 N -0.604 5.604 17 C 0.514 3.486 18 O -0.581 6.581 19 C -0.108 4.108 20 H 0.114 0.886 21 C -0.102 4.102 22 C -0.124 4.124 23 C 0.103 3.897 24 N -0.623 5.623 25 C 0.702 3.298 26 N -0.846 5.846 27 O -0.639 6.639 28 C 0.145 3.855 29 C 0.114 3.886 30 H 0.006 0.994 31 H 0.016 0.984 32 H 0.032 0.968 33 H 0.249 0.751 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.412 0.588 47 H 0.420 0.580 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 -28.731 -6.899 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.396 4.396 4 H 0.081 0.919 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.197 1.197 11 C 0.061 3.939 12 H 0.062 0.938 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.014 4.014 16 N -0.336 5.336 17 C 0.303 3.697 18 O -0.460 6.460 19 C -0.130 4.130 20 H 0.132 0.868 21 C -0.140 4.140 22 C -0.162 4.162 23 C -0.019 4.019 24 N -0.360 5.360 25 C 0.402 3.598 26 N -0.418 5.418 27 O -0.521 6.521 28 C 0.020 3.980 29 C -0.011 4.011 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.097 0.903 46 H 0.246 0.754 47 H 0.254 0.746 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.189 -27.830 -6.792 30.755 hybrid contribution 0.152 1.516 0.045 1.525 sum 11.341 -26.314 -6.747 29.437 Atomic orbital electron populations 1.20504 0.82409 0.95937 0.97652 1.44122 1.02217 1.00949 1.85912 1.19516 0.96311 0.86189 1.37554 0.91871 1.25625 0.98616 1.01266 0.98980 1.70248 1.20076 1.27006 1.40708 0.85273 0.78220 0.80041 0.77072 1.21386 1.21788 1.19684 1.20682 0.94759 0.85322 0.93176 0.93848 1.21928 1.00189 0.96021 0.97909 1.21847 0.99874 0.95524 0.98774 1.22022 1.03122 0.93573 0.82691 1.48288 1.48474 1.17833 1.18988 1.21081 0.78615 0.87748 0.82253 1.90671 1.65122 1.60265 1.29986 1.21698 0.96674 0.93833 1.00826 0.86785 1.21388 1.01662 0.97654 0.93267 1.21919 0.95864 0.95890 1.02534 1.22013 0.98002 0.98470 0.83419 1.47179 1.57046 1.25568 1.06215 1.16078 0.79325 0.81167 0.83235 1.42937 1.53310 1.30354 1.15190 1.90962 1.64548 1.64877 1.31666 1.21103 0.90015 0.85622 1.01214 1.21914 0.97127 0.82792 0.99242 0.97573 0.96521 0.95006 0.94176 0.94037 0.92068 0.88530 0.92560 0.89410 0.87600 0.91413 0.91879 0.90500 0.87564 0.86937 0.90275 0.75424 0.74649 0.91972 0.89899 0.92206 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.10 8.04 127.77 1.03 10.13 16 2 N -0.61 -31.78 2.82 -702.35 -1.98 -33.76 16 3 C -0.27 -15.39 9.62 84.03 0.81 -14.58 16 4 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 5 C -0.05 -2.89 5.03 84.86 0.43 -2.46 16 6 N -0.93 -56.53 10.68 21.65 0.23 -56.30 16 7 Si 0.97 47.10 29.58 68.60 2.03 49.12 16 8 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 C 0.17 7.21 2.74 45.07 0.12 7.33 16 12 H 0.04 2.01 7.84 -2.39 -0.02 1.99 16 13 C -0.12 -4.38 5.14 30.62 0.16 -4.22 16 14 C -0.12 -3.29 6.08 30.67 0.19 -3.11 16 15 C 0.11 2.49 6.18 86.36 0.53 3.03 16 16 N -0.60 -18.23 2.97 -818.89 -2.43 -20.67 16 17 C 0.51 15.38 6.82 87.66 0.60 15.98 16 18 O -0.58 -22.18 15.54 -3.02 -0.05 -22.22 16 19 C -0.11 -2.19 1.82 -11.46 -0.02 -2.21 16 20 H 0.11 1.91 6.35 -2.39 -0.02 1.89 16 21 C -0.10 -1.65 4.65 30.62 0.14 -1.50 16 22 C -0.12 -0.95 6.08 30.67 0.19 -0.76 16 23 C 0.10 0.75 6.39 86.36 0.55 1.31 16 24 N -0.62 -9.85 2.97 -836.92 -2.49 -12.33 16 25 C 0.70 13.30 8.57 179.05 1.53 14.84 16 26 N -0.85 -7.35 8.78 -184.75 -1.62 -8.97 16 27 O -0.64 -18.84 16.60 -3.96 -0.07 -18.90 16 28 C 0.15 3.13 5.60 86.36 0.48 3.62 16 29 C 0.11 4.33 5.77 86.36 0.50 4.83 16 30 H 0.01 0.33 7.47 -2.39 -0.02 0.31 16 31 H 0.02 0.90 7.11 -2.39 -0.02 0.88 16 32 H 0.03 1.36 6.36 -2.38 -0.02 1.35 16 33 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 2.16 7.71 -2.38 -0.02 2.14 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.00 5.09 -2.39 -0.01 1.98 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.23 7.93 -2.39 -0.02 1.21 16 42 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 44 H 0.11 0.05 5.65 -2.38 -0.01 0.03 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.41 0.63 6.32 -92.71 -0.59 0.04 16 47 H 0.42 3.00 8.93 -92.71 -0.83 2.17 16 48 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.08 2.15 6.56 -2.39 -0.02 2.14 16 50 H 0.06 2.63 7.04 -2.39 -0.02 2.62 16 51 H 0.07 2.48 6.50 -2.39 -0.02 2.46 16 Total: -1.00 -80.93 386.07 0.41 -80.53 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.46 Total: 11.29 kcal Atomic # 6 Polarization: 24.98 SS G_CDS: 7.24 Total: 32.21 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -8.29 Total: -132.03 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.11 Total: -41.13 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.93 0.41 -80.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.872 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds