Wall clock time and date at job start Tue Mar 31 2020 20:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99886 * 2 1 4 4 H 1.08004 * 119.99720 * 143.18657 * 3 2 1 5 5 C 1.38808 * 120.00082 * 323.18481 * 3 2 1 6 6 N 1.31620 * 119.99727 * 161.57931 * 5 3 2 7 7 Si 1.86801 * 120.00226 * 341.58266 * 5 3 2 8 8 H 1.48500 * 109.46965 * 94.24153 * 7 5 3 9 9 H 1.48492 * 109.47446 * 214.24477 * 7 5 3 10 10 H 1.48503 * 109.46816 * 334.24304 * 7 5 3 11 11 C 1.46497 * 120.00064 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49933 * 179.97438 * 11 2 1 13 13 C 1.53036 * 109.50189 * 300.00340 * 11 2 1 14 14 C 1.53033 * 109.54221 * 181.34759 * 13 11 2 15 15 C 1.53193 * 109.31438 * 298.63507 * 14 13 11 16 16 N 1.46924 * 108.77398 * 54.63509 * 15 14 13 17 17 C 1.34774 * 120.63419 * 126.37185 * 16 15 14 18 18 O 1.21281 * 120.00343 * 175.29914 * 17 16 15 19 19 C 1.50698 * 120.00007 * 355.29488 * 17 16 15 20 20 C 1.53037 * 109.45190 * 158.88509 * 19 17 16 21 21 C 1.53195 * 109.31677 * 181.38059 * 20 19 17 22 22 N 1.46932 * 108.77128 * 305.36857 * 21 20 19 23 23 C 1.34780 * 120.62369 * 233.62807 * 22 21 20 24 24 N 1.34782 * 119.99371 * 184.01991 * 23 22 21 25 25 O 1.21579 * 120.00319 * 4.01549 * 23 22 21 26 26 C 1.46919 * 118.73978 * 53.60794 * 22 21 20 27 27 C 1.53038 * 109.45996 * 278.94795 * 19 17 16 28 28 C 1.46932 * 118.73866 * 306.64407 * 16 15 14 29 29 H 1.08996 * 109.47478 * 267.94743 * 1 2 3 30 30 H 1.08997 * 109.47136 * 27.95082 * 1 2 3 31 31 H 1.08998 * 109.46933 * 147.94684 * 1 2 3 32 32 H 0.97009 * 119.99803 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.45723 * 61.32546 * 13 11 2 34 34 H 1.09001 * 109.45698 * 301.36824 * 13 11 2 35 35 H 1.08997 * 109.50289 * 178.68010 * 14 13 11 36 36 H 1.09005 * 109.49824 * 58.58412 * 14 13 11 37 37 H 1.09001 * 109.58678 * 294.85056 * 15 14 13 38 38 H 1.09000 * 109.70679 * 174.49001 * 15 14 13 39 39 H 1.08997 * 109.45721 * 38.92001 * 19 17 16 40 40 H 1.08997 * 109.49800 * 301.33250 * 20 19 17 41 41 H 1.08997 * 109.49635 * 61.42581 * 20 19 17 42 42 H 1.08991 * 109.59149 * 185.57801 * 21 20 19 43 43 H 1.08999 * 109.70096 * 65.21762 * 21 20 19 44 44 H 0.96996 * 119.99860 * 6.35416 * 24 23 22 45 45 H 0.97003 * 119.99569 * 186.36661 * 24 23 22 46 46 H 1.09008 * 109.58631 * 186.60524 * 26 22 21 47 47 H 1.08995 * 109.70895 * 66.24780 * 26 22 21 48 48 H 1.09001 * 109.50237 * 298.57520 * 27 19 17 49 49 H 1.08997 * 109.49730 * 58.67852 * 27 19 17 50 50 H 1.09000 * 109.58683 * 173.14530 * 28 16 15 51 51 H 1.09001 * 109.58674 * 293.56863 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0681 1.2792 0.5605 5 6 1.6632 2.2682 -0.7203 6 7 2.0889 3.4838 -0.4494 7 14 0.4044 1.9994 -2.0741 8 1 -0.9621 2.1843 -1.5232 9 1 0.6348 2.9791 -3.1659 10 1 0.5400 0.6208 -2.6094 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0713 1.2502 14 6 2.6181 -3.3818 1.2688 15 6 2.2510 -4.2123 0.0349 16 7 2.4667 -3.3947 -1.1666 17 6 3.2384 -3.8463 -2.1751 18 8 3.3403 -3.2006 -3.1967 19 6 3.9747 -5.1534 -2.0333 20 6 4.3254 -5.6940 -3.4214 21 6 5.0433 -7.0394 -3.2748 22 7 6.1997 -6.8639 -2.3856 23 6 7.4320 -7.2423 -2.7791 24 7 8.4700 -7.1508 -1.9242 25 8 7.6072 -7.6664 -3.9050 26 6 5.9873 -6.2676 -1.0598 27 6 5.2590 -4.9308 -1.2313 28 6 1.8301 -2.0728 -1.2453 29 1 -0.3634 -0.0368 1.0269 30 1 -0.3633 0.9078 -0.4817 31 1 -0.3633 -0.8710 -0.5454 32 1 1.7492 4.2402 -0.9531 33 1 0.7606 -2.2908 1.2383 34 1 2.0692 -1.4894 2.1398 35 1 2.3721 -3.9422 2.1707 36 1 3.6859 -3.1633 1.2556 37 1 1.2035 -4.5083 0.0921 38 1 2.8800 -5.1013 -0.0103 39 1 3.3417 -5.8722 -1.5130 40 1 3.4120 -5.8302 -4.0002 41 1 4.9786 -4.9869 -3.9328 42 1 5.3826 -7.3810 -4.2526 43 1 4.3618 -7.7747 -2.8471 44 1 8.3163 -6.9008 -0.9997 45 1 9.3708 -7.3348 -2.2337 46 1 6.9497 -6.0999 -0.5761 47 1 5.3828 -6.9372 -0.4481 48 1 5.9035 -4.2310 -1.7632 49 1 5.0099 -4.5239 -0.2513 50 1 2.1835 -1.5493 -2.1337 51 1 0.7477 -2.1908 -1.2946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027674544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:09 Heat of formation + Delta-G solvation = -31.277787 kcal Electronic energy + Delta-G solvation = -31182.512849 eV Core-core repulsion = 27117.798514 eV Total energy + Delta-G solvation = -4064.714336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.93161 -40.00888 -38.00594 -37.03172 -35.34727 -34.29825 -32.96022 -32.24678 -31.57857 -31.25835 -29.55108 -26.72530 -26.19135 -24.87916 -23.82888 -23.66190 -22.02174 -21.66852 -20.15562 -19.54539 -18.90913 -18.37705 -17.25900 -17.20755 -16.87337 -15.86770 -15.69646 -15.51039 -15.31192 -15.13272 -14.72215 -14.47345 -14.21017 -14.00213 -13.84851 -13.60881 -13.45714 -13.22755 -12.83815 -12.76121 -12.52280 -12.47106 -12.31711 -12.21805 -11.95388 -11.64768 -11.49544 -11.13308 -11.00742 -10.92987 -10.66444 -10.55810 -10.47254 -10.45867 -10.10319 -10.00733 -9.93111 -9.61791 -9.56468 -8.94403 -8.56570 -8.46599 -6.88687 -6.01146 -3.46300 2.44275 2.69374 2.89264 3.08781 3.29022 3.47589 3.51375 3.76022 4.27099 4.34608 4.45632 4.49247 4.65389 4.70140 4.88115 4.91060 4.99270 5.05419 5.08792 5.13624 5.16115 5.28890 5.32391 5.38580 5.43808 5.51668 5.59257 5.65523 5.70253 5.78587 5.80989 5.98614 6.04247 6.08460 6.11150 6.16611 6.26811 6.34412 6.42075 6.45014 6.59226 6.60140 6.64682 6.80696 6.83537 7.51018 7.55891 8.00723 8.29659 8.30183 8.34179 8.92324 9.66259 10.04151 11.14176 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002761 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.103857 B =10137.821434 C =10458.061785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.081 0.919 5 C 0.033 3.967 6 N -0.903 5.903 7 Si 0.890 3.110 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.269 1.269 11 C 0.168 3.832 12 H 0.073 0.927 13 C -0.132 4.132 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.606 5.606 17 C 0.514 3.486 18 O -0.537 6.537 19 C -0.105 4.105 20 C -0.117 4.117 21 C 0.129 3.871 22 N -0.628 5.628 23 C 0.710 3.290 24 N -0.869 5.869 25 O -0.594 6.594 26 C 0.114 3.886 27 C -0.126 4.126 28 C 0.093 3.907 29 H 0.018 0.982 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.396 0.604 45 H 0.413 0.587 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -24.599 4.199 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.326 5.326 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.167 4.167 6 N -0.545 5.545 7 Si 0.722 3.278 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.194 1.194 11 C 0.060 3.940 12 H 0.092 0.908 13 C -0.171 4.171 14 C -0.170 4.170 15 C -0.018 4.018 16 N -0.340 5.340 17 C 0.302 3.698 18 O -0.413 6.413 19 C -0.126 4.126 20 C -0.156 4.156 21 C 0.006 3.994 22 N -0.366 5.366 23 C 0.410 3.590 24 N -0.439 5.439 25 O -0.472 6.472 26 C -0.009 4.009 27 C -0.165 4.165 28 C -0.031 4.031 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.226 0.774 45 H 0.245 0.755 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.454 -24.290 2.825 25.055 hybrid contribution -0.612 0.223 -0.212 0.685 sum 4.842 -24.067 2.612 24.688 Atomic orbital electron populations 1.21345 0.85032 0.98914 0.98272 1.44062 1.00435 1.01581 1.86479 1.18805 1.09006 0.86608 1.25379 0.90163 1.25474 0.98367 0.95399 0.97479 1.69818 1.45634 0.98030 1.40983 0.86766 0.80508 0.77859 0.82680 1.21562 1.23108 1.19427 1.20671 0.97044 0.85622 0.90702 0.90847 1.22041 0.99479 0.95057 1.00544 1.21914 1.01114 0.97177 0.96796 1.21804 1.01378 0.93697 0.84927 1.48246 1.49225 1.18759 1.17760 1.20518 0.79043 0.87200 0.83077 1.90719 1.63297 1.58804 1.28499 1.21310 0.96984 0.95621 0.98701 1.21790 1.01586 0.96760 0.95422 1.21541 0.85751 0.96616 0.95452 1.47287 1.06688 1.65103 1.17551 1.15850 0.80625 0.78295 0.84235 1.43155 1.09467 1.77725 1.13582 1.90958 1.83546 1.53164 1.19546 1.21647 1.00858 0.94266 0.84139 1.21906 0.95801 0.97587 1.01179 1.22398 0.96822 0.81533 1.02313 0.96415 0.93778 0.95141 0.92614 0.92460 0.91366 0.91107 0.91555 0.91560 0.90056 0.88817 0.90115 0.90104 0.88417 0.91497 0.77359 0.75473 0.90038 0.90818 0.90377 0.89650 0.89077 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 8.51 59.84 0.51 2.82 16 2 N -0.60 -13.89 2.41 -173.61 -0.42 -14.30 16 3 C -0.27 -7.46 9.88 -15.06 -0.15 -7.61 16 4 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 5 C 0.03 0.96 5.36 -17.43 -0.09 0.87 16 6 N -0.90 -27.67 13.97 55.49 0.78 -26.90 16 7 Si 0.89 22.75 24.77 -169.99 -4.21 18.54 16 8 H -0.29 -7.06 6.68 56.52 0.38 -6.68 16 9 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 10 H -0.27 -6.79 7.09 56.52 0.40 -6.39 16 11 C 0.17 3.14 2.73 -68.04 -0.19 2.95 16 12 H 0.07 1.49 7.89 -51.93 -0.41 1.08 16 13 C -0.13 -1.90 5.15 -26.70 -0.14 -2.04 16 14 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 15 C 0.11 0.99 5.94 -3.71 -0.02 0.97 16 16 N -0.61 -8.36 2.98 -173.03 -0.52 -8.88 16 17 C 0.51 7.38 6.84 -10.99 -0.08 7.31 16 18 O -0.54 -10.32 15.51 5.56 0.09 -10.24 16 19 C -0.10 -0.99 1.62 -91.73 -0.15 -1.14 16 20 C -0.12 -1.18 4.81 -26.61 -0.13 -1.31 16 21 C 0.13 1.13 6.44 -3.71 -0.02 1.11 16 22 N -0.63 -5.35 2.97 -178.49 -0.53 -5.88 16 23 C 0.71 7.43 8.57 -86.91 -0.75 6.69 16 24 N -0.87 -5.41 8.73 27.64 0.24 -5.17 16 25 O -0.59 -8.89 16.59 5.30 0.09 -8.80 16 26 C 0.11 0.63 6.36 -3.71 -0.02 0.61 16 27 C -0.13 -0.98 5.14 -26.61 -0.14 -1.12 16 28 C 0.09 1.66 5.75 -3.93 -0.02 1.63 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 1.03 2.92 -51.93 -0.15 0.88 16 31 H 0.03 0.57 6.34 -51.93 -0.33 0.24 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.06 0.81 7.72 -51.93 -0.40 0.41 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.53 5.04 -51.93 -0.26 0.27 16 39 H 0.09 0.65 6.50 -51.93 -0.34 0.32 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 42 H 0.10 1.02 6.99 -51.93 -0.36 0.66 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.40 1.34 6.41 -40.82 -0.26 1.08 16 45 H 0.41 2.17 8.93 -40.82 -0.36 1.81 16 46 H 0.08 0.29 5.72 -51.92 -0.30 -0.01 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.09 0.58 7.41 -51.93 -0.39 0.20 16 50 H 0.09 1.97 7.04 -51.93 -0.37 1.61 16 51 H 0.06 1.03 6.47 -51.93 -0.34 0.70 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -36.93 380.99 -8.35 -45.28 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.06 Total: 0.35 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -1.54 Total: 10.26 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.45 Total: -61.13 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.17 Total: -19.04 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.21 Total: 18.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.93 -8.35 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027674544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.007 kcal (2) G-P(sol) polarization free energy of solvation -36.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds