Wall clock time and date at job start Tue Mar 31 2020 20:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99886 * 2 1 4 4 H 1.08004 * 119.99720 * 143.18657 * 3 2 1 5 5 C 1.38808 * 120.00082 * 323.18481 * 3 2 1 6 6 N 1.31620 * 119.99727 * 161.57931 * 5 3 2 7 7 Si 1.86801 * 120.00226 * 341.58266 * 5 3 2 8 8 H 1.48500 * 109.46965 * 94.24153 * 7 5 3 9 9 H 1.48492 * 109.47446 * 214.24477 * 7 5 3 10 10 H 1.48503 * 109.46816 * 334.24304 * 7 5 3 11 11 C 1.46497 * 120.00064 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49933 * 179.97438 * 11 2 1 13 13 C 1.53036 * 109.50189 * 300.00340 * 11 2 1 14 14 C 1.53033 * 109.54221 * 181.34759 * 13 11 2 15 15 C 1.53193 * 109.31438 * 298.63507 * 14 13 11 16 16 N 1.46924 * 108.77398 * 54.63509 * 15 14 13 17 17 C 1.34774 * 120.63419 * 126.37185 * 16 15 14 18 18 O 1.21281 * 120.00343 * 175.29914 * 17 16 15 19 19 C 1.50698 * 120.00007 * 355.29488 * 17 16 15 20 20 C 1.53037 * 109.45190 * 158.88509 * 19 17 16 21 21 C 1.53195 * 109.31677 * 181.38059 * 20 19 17 22 22 N 1.46932 * 108.77128 * 305.36857 * 21 20 19 23 23 C 1.34780 * 120.62369 * 233.62807 * 22 21 20 24 24 N 1.34782 * 119.99371 * 184.01991 * 23 22 21 25 25 O 1.21579 * 120.00319 * 4.01549 * 23 22 21 26 26 C 1.46919 * 118.73978 * 53.60794 * 22 21 20 27 27 C 1.53038 * 109.45996 * 278.94795 * 19 17 16 28 28 C 1.46932 * 118.73866 * 306.64407 * 16 15 14 29 29 H 1.08996 * 109.47478 * 267.94743 * 1 2 3 30 30 H 1.08997 * 109.47136 * 27.95082 * 1 2 3 31 31 H 1.08998 * 109.46933 * 147.94684 * 1 2 3 32 32 H 0.97009 * 119.99803 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.45723 * 61.32546 * 13 11 2 34 34 H 1.09001 * 109.45698 * 301.36824 * 13 11 2 35 35 H 1.08997 * 109.50289 * 178.68010 * 14 13 11 36 36 H 1.09005 * 109.49824 * 58.58412 * 14 13 11 37 37 H 1.09001 * 109.58678 * 294.85056 * 15 14 13 38 38 H 1.09000 * 109.70679 * 174.49001 * 15 14 13 39 39 H 1.08997 * 109.45721 * 38.92001 * 19 17 16 40 40 H 1.08997 * 109.49800 * 301.33250 * 20 19 17 41 41 H 1.08997 * 109.49635 * 61.42581 * 20 19 17 42 42 H 1.08991 * 109.59149 * 185.57801 * 21 20 19 43 43 H 1.08999 * 109.70096 * 65.21762 * 21 20 19 44 44 H 0.96996 * 119.99860 * 6.35416 * 24 23 22 45 45 H 0.97003 * 119.99569 * 186.36661 * 24 23 22 46 46 H 1.09008 * 109.58631 * 186.60524 * 26 22 21 47 47 H 1.08995 * 109.70895 * 66.24780 * 26 22 21 48 48 H 1.09001 * 109.50237 * 298.57520 * 27 19 17 49 49 H 1.08997 * 109.49730 * 58.67852 * 27 19 17 50 50 H 1.09000 * 109.58683 * 173.14530 * 28 16 15 51 51 H 1.09001 * 109.58674 * 293.56863 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0681 1.2792 0.5605 5 6 1.6632 2.2682 -0.7203 6 7 2.0889 3.4838 -0.4494 7 14 0.4044 1.9994 -2.0741 8 1 -0.9621 2.1843 -1.5232 9 1 0.6348 2.9791 -3.1659 10 1 0.5400 0.6208 -2.6094 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0713 1.2502 14 6 2.6181 -3.3818 1.2688 15 6 2.2510 -4.2123 0.0349 16 7 2.4667 -3.3947 -1.1666 17 6 3.2384 -3.8463 -2.1751 18 8 3.3403 -3.2006 -3.1967 19 6 3.9747 -5.1534 -2.0333 20 6 4.3254 -5.6940 -3.4214 21 6 5.0433 -7.0394 -3.2748 22 7 6.1997 -6.8639 -2.3856 23 6 7.4320 -7.2423 -2.7791 24 7 8.4700 -7.1508 -1.9242 25 8 7.6072 -7.6664 -3.9050 26 6 5.9873 -6.2676 -1.0598 27 6 5.2590 -4.9308 -1.2313 28 6 1.8301 -2.0728 -1.2453 29 1 -0.3634 -0.0368 1.0269 30 1 -0.3633 0.9078 -0.4817 31 1 -0.3633 -0.8710 -0.5454 32 1 1.7492 4.2402 -0.9531 33 1 0.7606 -2.2908 1.2383 34 1 2.0692 -1.4894 2.1398 35 1 2.3721 -3.9422 2.1707 36 1 3.6859 -3.1633 1.2556 37 1 1.2035 -4.5083 0.0921 38 1 2.8800 -5.1013 -0.0103 39 1 3.3417 -5.8722 -1.5130 40 1 3.4120 -5.8302 -4.0002 41 1 4.9786 -4.9869 -3.9328 42 1 5.3826 -7.3810 -4.2526 43 1 4.3618 -7.7747 -2.8471 44 1 8.3163 -6.9008 -0.9997 45 1 9.3708 -7.3348 -2.2337 46 1 6.9497 -6.0999 -0.5761 47 1 5.3828 -6.9372 -0.4481 48 1 5.9035 -4.2310 -1.7632 49 1 5.0099 -4.5239 -0.2513 50 1 2.1835 -1.5493 -2.1337 51 1 0.7477 -2.1908 -1.2946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027674544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:08 Heat of formation + Delta-G solvation = -60.483960 kcal Electronic energy + Delta-G solvation = -31183.779324 eV Core-core repulsion = 27117.798514 eV Total energy + Delta-G solvation = -4065.980810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.81223 -40.96286 -39.23380 -38.00261 -36.89288 -35.05219 -34.21587 -33.45570 -33.03838 -31.91449 -30.96513 -28.14519 -27.55927 -25.90481 -25.38389 -24.32980 -22.96880 -22.83323 -21.18286 -20.53303 -19.86134 -19.22223 -18.91708 -18.27263 -17.88303 -17.45953 -16.93851 -16.42695 -16.35496 -16.10343 -15.70926 -15.54120 -15.36155 -15.17553 -14.87993 -14.71610 -14.45036 -14.39094 -14.23388 -14.04383 -14.00560 -13.70747 -13.65410 -13.30959 -13.04762 -12.90318 -12.58074 -12.30055 -12.22471 -12.07346 -11.93225 -11.86093 -11.70563 -11.61697 -11.52876 -11.42755 -11.31166 -10.75227 -10.69162 -10.64094 -9.69085 -9.58963 -8.78414 -8.25288 -5.65515 1.21862 1.37051 1.45761 1.59322 1.82135 1.97420 2.16609 2.34436 3.03920 3.26078 3.30553 3.45092 3.70834 3.73275 3.94839 4.01170 4.06718 4.10803 4.21220 4.27093 4.32022 4.33553 4.39493 4.50755 4.59628 4.65661 4.67858 4.73693 4.78339 4.80383 4.81567 4.87738 4.90034 4.96422 4.97522 5.06968 5.14883 5.21113 5.30919 5.46220 5.50389 5.52453 5.54915 5.87798 5.88200 6.02891 6.10666 6.49468 6.92047 6.93205 7.20687 7.56529 7.62691 7.96404 8.94488 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002761 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.103857 B =10137.821434 C =10458.061785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.618 5.618 3 C -0.256 4.256 4 H 0.044 0.956 5 C -0.024 4.024 6 N -0.952 5.952 7 Si 0.952 3.048 8 H -0.267 1.267 9 H -0.314 1.314 10 H -0.268 1.268 11 C 0.167 3.833 12 H 0.044 0.956 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.099 3.901 16 N -0.604 5.604 17 C 0.506 3.494 18 O -0.599 6.599 19 C -0.092 4.092 20 C -0.112 4.112 21 C 0.135 3.865 22 N -0.628 5.628 23 C 0.700 3.300 24 N -0.851 5.851 25 O -0.649 6.649 26 C 0.115 3.885 27 C -0.124 4.124 28 C 0.105 3.895 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.413 0.587 45 H 0.418 0.582 46 H 0.104 0.896 47 H 0.114 0.886 48 H 0.043 0.957 49 H 0.106 0.894 50 H 0.040 0.960 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -28.964 6.901 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.342 5.342 3 C -0.386 4.386 4 H 0.062 0.938 5 C -0.220 4.220 6 N -0.597 5.597 7 Si 0.783 3.217 8 H -0.194 1.194 9 H -0.243 1.243 10 H -0.193 1.193 11 C 0.060 3.940 12 H 0.062 0.938 13 C -0.162 4.162 14 C -0.162 4.162 15 C -0.022 4.022 16 N -0.336 5.336 17 C 0.296 3.704 18 O -0.480 6.480 19 C -0.113 4.113 20 C -0.151 4.151 21 C 0.012 3.988 22 N -0.366 5.366 23 C 0.399 3.601 24 N -0.422 5.422 25 O -0.531 6.531 26 C -0.007 4.007 27 C -0.162 4.162 28 C -0.020 4.020 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.246 0.754 45 H 0.251 0.749 46 H 0.122 0.878 47 H 0.132 0.868 48 H 0.062 0.938 49 H 0.124 0.876 50 H 0.059 0.941 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.176 -28.715 5.631 29.559 hybrid contribution -0.144 1.583 -0.975 1.865 sum 4.032 -27.132 4.656 27.822 Atomic orbital electron populations 1.21400 0.83579 0.99108 0.99560 1.44193 1.01499 1.01631 1.86925 1.18715 1.07730 0.88532 1.23587 0.93814 1.26089 1.01143 0.95141 0.99675 1.69942 1.48241 0.98903 1.42572 0.85756 0.79331 0.77176 0.79478 1.19364 1.24334 1.19271 1.20777 0.95013 0.84635 0.93583 0.93787 1.21910 1.00957 0.96546 0.96803 1.21914 1.00310 0.94978 0.98958 1.22238 1.03754 0.94044 0.82124 1.48321 1.48430 1.17436 1.19409 1.21505 0.78421 0.88395 0.82080 1.90700 1.65164 1.60940 1.31172 1.21357 0.97809 0.93241 0.98851 1.21696 1.00792 0.96778 0.95818 1.21477 0.86201 0.96036 0.95110 1.47366 1.05914 1.64659 1.18618 1.16154 0.81711 0.78251 0.83934 1.42969 1.08811 1.76463 1.13908 1.90921 1.84486 1.55657 1.22034 1.21934 1.02632 0.93193 0.82910 1.21930 0.94466 0.98591 1.01237 1.21873 0.97158 0.83593 0.99362 0.94620 0.95913 0.92206 0.92769 0.91316 0.92848 0.87008 0.91584 0.89580 0.85678 0.84293 0.90382 0.94220 0.90871 0.87969 0.75404 0.74885 0.87766 0.86802 0.93797 0.87558 0.94081 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.38 8.51 127.77 1.09 5.47 16 2 N -0.62 -28.69 2.41 -703.18 -1.69 -30.39 16 3 C -0.26 -14.71 9.88 84.03 0.83 -13.88 16 4 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 5 C -0.02 -1.46 5.36 84.86 0.46 -1.00 16 6 N -0.95 -60.82 13.97 21.65 0.30 -60.52 16 7 Si 0.95 48.46 24.77 68.60 1.70 50.16 16 8 H -0.27 -12.56 6.68 99.48 0.66 -11.89 16 9 H -0.31 -16.40 7.11 99.48 0.71 -15.70 16 10 H -0.27 -13.37 7.09 99.48 0.71 -12.67 16 11 C 0.17 6.20 2.73 44.93 0.12 6.32 16 12 H 0.04 1.85 7.89 -2.39 -0.02 1.84 16 13 C -0.12 -3.20 5.15 30.62 0.16 -3.04 16 14 C -0.12 -1.84 6.08 30.67 0.19 -1.66 16 15 C 0.10 1.30 5.94 86.36 0.51 1.81 16 16 N -0.60 -15.23 2.98 -819.72 -2.44 -17.67 16 17 C 0.51 14.01 6.84 87.66 0.60 14.61 16 18 O -0.60 -24.15 15.51 -3.03 -0.05 -24.20 16 19 C -0.09 -1.45 1.62 -11.52 -0.02 -1.47 16 20 C -0.11 -2.18 4.81 30.67 0.15 -2.04 16 21 C 0.13 2.10 6.44 86.36 0.56 2.66 16 22 N -0.63 -9.04 2.97 -836.90 -2.49 -11.53 16 23 C 0.70 13.69 8.57 179.05 1.54 15.22 16 24 N -0.85 -8.66 8.73 -184.74 -1.61 -10.27 16 25 O -0.65 -19.61 16.59 -3.96 -0.07 -19.68 16 26 C 0.12 0.71 6.36 86.37 0.55 1.26 16 27 C -0.12 -1.51 5.14 30.67 0.16 -1.35 16 28 C 0.11 3.71 5.75 86.22 0.50 4.21 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.02 1.03 2.92 -2.39 -0.01 1.02 16 31 H 0.06 2.07 6.34 -2.39 -0.02 2.05 16 32 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 33 H 0.07 1.66 7.72 -2.39 -0.02 1.64 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.13 0.61 5.04 -2.39 -0.01 0.60 16 39 H 0.14 1.00 6.50 -2.39 -0.02 0.98 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.09 7.94 -2.39 -0.02 1.07 16 42 H 0.07 1.54 6.99 -2.39 -0.02 1.52 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.41 1.30 6.41 -92.71 -0.59 0.70 16 45 H 0.42 3.70 8.93 -92.71 -0.83 2.87 16 46 H 0.10 0.20 5.72 -2.38 -0.01 0.19 16 47 H 0.11 -0.04 8.14 -2.39 -0.02 -0.05 16 48 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.11 0.90 7.41 -2.39 -0.02 0.88 16 50 H 0.04 1.85 7.04 -2.39 -0.02 1.84 16 51 H 0.07 2.21 6.47 -2.39 -0.02 2.20 16 Total: -1.00 -91.49 380.99 0.53 -90.97 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -0.50 Total: 6.00 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 7.38 Total: 27.12 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -7.93 Total: -130.37 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.11 Total: -43.88 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.70 Total: 50.16 kcal Total: -91.49 0.53 -90.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027674544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.482 kcal (2) G-P(sol) polarization free energy of solvation -91.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds