Wall clock time and date at job start Tue Mar 31 2020 21:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00019 * 2 1 4 4 H 1.48499 * 109.46766 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46986 * 299.99768 * 3 2 1 6 6 H 1.48498 * 109.47009 * 60.00070 * 3 2 1 7 7 C 1.38813 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99690 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.63017 * 359.96984 * 9 7 2 11 11 C 1.54457 * 107.29786 * 179.03381 * 10 9 7 12 12 C 1.54386 * 103.03328 * 338.41280 * 11 10 9 13 13 C 1.47574 * 125.62684 * 180.02562 * 9 7 2 14 14 C 1.52107 * 110.51815 * 276.74591 * 12 11 10 15 15 C 1.53340 * 109.44700 * 295.89309 * 14 12 11 16 16 N 1.46933 * 108.69527 * 306.70899 * 15 14 12 17 17 C 1.34773 * 120.55963 * 234.32621 * 16 15 14 18 18 O 1.21273 * 120.00508 * 174.58738 * 17 16 15 19 19 C 1.50701 * 119.99372 * 354.58883 * 17 16 15 20 20 H 1.08999 * 109.47589 * 334.67320 * 19 17 16 21 21 C 1.53007 * 109.46938 * 214.67529 * 19 17 16 22 22 C 1.52998 * 109.47031 * 180.02562 * 21 19 17 23 23 C 1.53000 * 109.47099 * 60.00295 * 22 21 19 24 24 C 1.52999 * 109.46994 * 299.99303 * 23 22 21 25 25 H 1.08993 * 109.47717 * 300.00725 * 24 23 22 26 26 F 1.39898 * 109.46813 * 179.97438 * 24 23 22 27 27 C 1.53001 * 109.46906 * 60.00637 * 24 23 22 28 28 C 1.46946 * 118.88860 * 54.34424 * 16 15 14 29 29 C 1.52109 * 110.50770 * 152.71723 * 12 11 10 30 30 H 0.96999 * 120.00471 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.87395 * 59.61164 * 10 9 7 32 32 H 1.08998 * 110.00576 * 298.53023 * 10 9 7 33 33 H 1.08999 * 110.73209 * 96.84844 * 11 10 9 34 34 H 1.09002 * 110.73393 * 219.97777 * 11 10 9 35 35 H 1.09005 * 110.37443 * 322.12483 * 13 9 7 36 36 H 1.09001 * 110.37552 * 84.35538 * 13 9 7 37 37 H 1.08998 * 109.47883 * 55.88559 * 14 12 11 38 38 H 1.09000 * 109.48042 * 175.90173 * 14 12 11 39 39 H 1.08994 * 109.60535 * 186.94512 * 15 14 12 40 40 H 1.09006 * 109.60282 * 66.46921 * 15 14 12 41 41 H 1.08999 * 109.46810 * 300.00268 * 21 19 17 42 42 H 1.09002 * 109.46809 * 60.00275 * 21 19 17 43 43 H 1.08999 * 109.47414 * 299.99741 * 22 21 19 44 44 H 1.09001 * 109.46589 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.46653 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.47092 * 59.99859 * 23 22 21 47 47 H 1.08993 * 109.47345 * 180.02562 * 27 24 23 48 48 H 1.08997 * 109.47311 * 59.99364 * 27 24 23 49 49 H 1.08998 * 109.60194 * 185.88735 * 28 16 15 50 50 H 1.08998 * 109.73153 * 65.48304 * 28 16 15 51 51 H 1.08994 * 109.47826 * 184.09735 * 29 12 11 52 52 H 1.09005 * 109.47283 * 304.10114 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1383 -2.5323 0.0006 11 6 -0.4507 -4.0448 -0.0243 12 6 0.8476 -4.6592 -0.5903 13 6 1.9344 -3.7323 0.0016 14 6 0.8512 -4.5913 -2.1098 15 6 -0.2889 -5.4551 -2.6623 16 7 -0.1746 -6.8053 -2.0941 17 6 -0.1240 -7.8853 -2.8987 18 8 0.0688 -8.9853 -2.4259 19 6 -0.3071 -7.7259 -4.3860 20 1 -0.8901 -6.8270 -4.5862 21 6 -1.0438 -8.9459 -4.9428 22 6 -1.2291 -8.7844 -6.4529 23 6 0.1403 -8.6651 -7.1249 24 6 0.8769 -7.4451 -6.5682 25 1 0.2942 -6.5461 -6.7686 26 9 2.1292 -7.3363 -7.1822 27 6 1.0623 -7.6065 -5.0581 28 6 -0.1167 -6.9584 -0.6338 29 6 1.0227 -6.0861 -0.0932 30 1 -0.4851 0.8400 0.0004 31 1 -0.5579 -2.0526 -0.8836 32 1 -0.5573 -2.0821 0.9005 33 1 -0.6461 -4.4151 0.9821 34 1 -1.2949 -4.2537 -0.6814 35 1 2.8262 -3.7455 -0.6251 36 1 2.1818 -4.0361 1.0188 37 1 0.7112 -3.5581 -2.4278 38 1 1.8040 -4.9619 -2.4880 39 1 -0.2144 -5.5080 -3.7484 40 1 -1.2475 -5.0196 -2.3800 41 1 -0.4608 -9.8449 -4.7427 42 1 -2.0191 -9.0312 -4.4638 43 1 -1.8118 -7.8854 -6.6534 44 1 -1.7543 -9.6534 -6.8494 45 1 0.0082 -8.5505 -8.2008 46 1 0.7230 -9.5641 -6.9244 47 1 1.5866 -6.7373 -4.6614 48 1 1.6450 -8.5056 -4.8576 49 1 0.0712 -8.0023 -0.3827 50 1 -1.0615 -6.6406 -0.1927 51 1 1.9778 -6.4781 -0.4427 52 1 1.0026 -6.0963 0.9966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035186635.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:20 Heat of formation + Delta-G solvation = -98.317113 kcal Electronic energy + Delta-G solvation = -31294.721085 eV Core-core repulsion = 27207.179744 eV Total energy + Delta-G solvation = -4087.541341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.61496 -41.79253 -40.27257 -38.29837 -37.15556 -34.80962 -33.06225 -32.13161 -31.64197 -31.09010 -30.41420 -28.30252 -26.15755 -24.96048 -24.40989 -23.66254 -23.22761 -21.93262 -21.37023 -20.48447 -19.31247 -18.59170 -18.05121 -17.36846 -16.83873 -16.79994 -16.38553 -16.29431 -16.25385 -15.83552 -15.66066 -15.50605 -14.89538 -14.75187 -14.68890 -14.63346 -14.06164 -13.96501 -13.89963 -13.72421 -13.45862 -13.39951 -13.05680 -12.95370 -12.77838 -12.62065 -12.32474 -12.26665 -12.21316 -12.08844 -12.03447 -11.93580 -11.78531 -11.62177 -11.61147 -11.45693 -11.27105 -11.13739 -11.05670 -10.67946 -10.56831 -9.60620 -8.84209 -7.82807 -5.16813 1.46118 1.46629 1.55136 1.56644 1.99314 2.50443 3.27827 3.35246 3.49675 3.56942 3.64157 3.71568 3.76232 3.84534 3.85146 4.01203 4.05465 4.13667 4.17790 4.22922 4.32808 4.34918 4.36334 4.49242 4.53805 4.56804 4.64425 4.65146 4.72979 4.82944 4.83133 4.89218 4.90238 4.97301 5.01660 5.05988 5.08180 5.14417 5.17662 5.19593 5.21267 5.23637 5.40437 5.43563 5.47320 5.48847 5.63293 5.73974 5.84639 6.23233 6.41705 7.14368 7.14565 7.81609 8.46231 9.27234 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.002880 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.396277 B = 9719.126127 C =10745.038392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.623 5.623 10 C 0.189 3.811 11 C -0.120 4.120 12 C -0.057 4.057 13 C 0.140 3.860 14 C -0.107 4.107 15 C 0.110 3.890 16 N -0.604 5.604 17 C 0.519 3.481 18 O -0.582 6.582 19 C -0.099 4.099 20 H 0.120 0.880 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.144 4.144 24 C 0.091 3.909 25 H 0.108 0.892 26 F -0.230 7.230 27 C -0.131 4.131 28 C 0.116 3.884 29 C -0.106 4.106 30 H 0.245 0.755 31 H 0.014 0.986 32 H -0.002 1.002 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.018 0.982 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.061 0.939 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 -18.269 -12.893 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.064 3.936 11 C -0.158 4.158 12 C -0.058 4.058 13 C 0.015 3.985 14 C -0.145 4.145 15 C -0.012 4.012 16 N -0.336 5.336 17 C 0.308 3.692 18 O -0.462 6.462 19 C -0.120 4.120 20 H 0.138 0.862 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.182 4.182 24 C 0.055 3.945 25 H 0.126 0.874 26 F -0.211 7.211 27 C -0.170 4.170 28 C -0.007 4.007 29 C -0.145 4.145 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.016 0.984 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.080 0.920 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.720 -18.624 -12.645 23.000 hybrid contribution 0.817 1.456 0.602 1.774 sum -3.903 -17.168 -12.043 21.331 Atomic orbital electron populations 1.70180 1.06063 1.24994 1.58491 1.25550 0.96576 1.00651 1.02876 0.85087 0.78135 0.79896 0.76694 1.19348 1.21760 1.22167 1.19436 0.90803 0.83923 1.42592 0.90550 1.44782 1.02536 1.00794 1.86835 1.20888 0.83436 0.91873 0.97358 1.22782 0.97203 0.94992 1.00784 1.21006 0.95329 0.93997 0.95478 1.21751 0.95104 0.84807 0.96842 1.21535 0.98934 0.99895 0.94115 1.21986 0.99123 0.80449 0.99645 1.48243 1.71667 1.06796 1.06898 1.21019 0.75034 0.83354 0.89790 1.90651 1.50964 1.26920 1.77641 1.21332 0.98183 1.02986 0.89471 0.86166 1.21448 1.00180 0.96057 0.96497 1.21456 0.95878 1.04212 0.92946 1.22153 0.97261 0.97184 1.01622 1.21743 0.80257 1.01716 0.90797 0.87439 1.92792 1.45943 1.97636 1.84744 1.21996 0.96367 1.03563 0.95047 1.21602 0.99080 1.00624 0.79364 1.21623 0.98700 0.92947 1.01194 0.94512 0.96755 0.98410 0.91548 0.89835 0.94773 0.96444 0.91905 0.91907 0.87238 0.89909 0.92300 0.90992 0.89605 0.89547 0.89387 0.91540 0.90526 0.91633 0.89872 0.90120 0.92038 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 10.31 21.65 0.22 -55.89 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.25 10.28 84.03 0.86 -12.39 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.62 -31.18 3.39 -691.76 -2.34 -33.53 16 10 C 0.19 8.95 5.00 86.76 0.43 9.38 16 11 C -0.12 -3.96 4.91 31.56 0.15 -3.81 16 12 C -0.06 -1.73 0.56 -51.75 -0.03 -1.76 16 13 C 0.14 5.55 6.17 86.73 0.54 6.08 16 14 C -0.11 -2.93 4.87 30.41 0.15 -2.78 16 15 C 0.11 2.21 5.85 86.41 0.51 2.72 16 16 N -0.60 -13.29 2.96 -818.28 -2.42 -15.71 16 17 C 0.52 11.98 6.69 87.66 0.59 12.56 16 18 O -0.58 -17.73 15.68 -3.01 -0.05 -17.78 16 19 C -0.10 -1.56 1.72 -11.54 -0.02 -1.58 16 20 H 0.12 1.34 6.18 -2.39 -0.01 1.33 16 21 C -0.10 -1.48 4.86 30.60 0.15 -1.34 16 22 C -0.11 -0.98 5.92 30.59 0.18 -0.80 16 23 C -0.14 -1.64 5.66 30.59 0.17 -1.47 16 24 C 0.09 1.30 3.88 30.59 0.12 1.42 16 25 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 26 F -0.23 -4.79 17.08 44.97 0.77 -4.03 16 27 C -0.13 -2.22 4.84 30.60 0.15 -2.07 16 28 C 0.12 2.65 6.17 86.41 0.53 3.18 16 29 C -0.11 -2.66 4.86 30.41 0.15 -2.51 16 30 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.01 0.75 7.39 -2.39 -0.02 0.73 16 32 H 0.00 -0.13 7.50 -2.39 -0.02 -0.15 16 33 H 0.07 2.08 7.98 -2.39 -0.02 2.06 16 34 H 0.08 2.37 6.18 -2.39 -0.01 2.36 16 35 H 0.03 1.35 8.03 -2.38 -0.02 1.33 16 36 H 0.02 0.70 8.01 -2.39 -0.02 0.69 16 37 H 0.06 2.10 7.82 -2.39 -0.02 2.08 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 1.63 5.41 -2.39 -0.01 1.62 16 40 H 0.08 1.61 6.55 -2.38 -0.02 1.59 16 41 H 0.06 1.08 7.86 -2.39 -0.02 1.06 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 1.36 8.03 -2.39 -0.02 1.34 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 2.05 6.99 -2.39 -0.02 2.03 16 50 H 0.08 1.69 7.62 -2.39 -0.02 1.67 16 51 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.08 1.97 8.10 -2.38 -0.02 1.95 16 Total: -1.00 -70.38 387.05 4.19 -66.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.89 Total: 11.41 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.09 Total: 1.73 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.54 Total: -105.12 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.05 Total: -17.78 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.77 Total: -4.03 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.38 4.19 -66.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035186635.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.129 kcal (2) G-P(sol) polarization free energy of solvation -70.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds