Wall clock time and date at job start Tue Mar 31 2020 21:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00224 * 2 1 4 4 H 1.48498 * 109.46989 * 5.66696 * 3 2 1 5 5 H 1.48497 * 109.47319 * 125.66643 * 3 2 1 6 6 H 1.48496 * 109.47202 * 245.67055 * 3 2 1 7 7 C 1.38814 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00312 * 348.55715 * 7 2 1 9 9 N 1.36939 * 119.99810 * 168.56402 * 7 2 1 10 10 C 1.47083 * 125.63001 * 352.49251 * 9 7 2 11 11 C 1.54451 * 107.29927 * 180.97081 * 10 9 7 12 12 C 1.54395 * 102.87011 * 21.50299 * 11 10 9 13 13 C 1.47575 * 125.62601 * 172.18896 * 9 7 2 14 14 C 1.52107 * 110.51017 * 207.35803 * 12 11 10 15 15 C 1.53342 * 109.44459 * 295.90451 * 14 12 11 16 16 N 1.46932 * 108.69120 * 306.70833 * 15 14 12 17 17 C 1.34770 * 120.54737 * 234.36668 * 16 15 14 18 18 O 1.21287 * 119.99909 * 184.96903 * 17 16 15 19 19 C 1.50704 * 120.00266 * 4.97311 * 17 16 15 20 20 C 1.53004 * 109.47053 * 201.94974 * 19 17 16 21 21 C 1.52999 * 109.47041 * 179.97438 * 20 19 17 22 22 C 1.52990 * 109.47430 * 60.00021 * 21 20 19 23 23 F 1.39895 * 109.47387 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.46992 * 300.00009 * 22 21 20 25 25 C 1.52990 * 109.47507 * 81.94941 * 19 17 16 26 26 C 1.46932 * 118.89708 * 54.34300 * 16 15 14 27 27 C 1.52107 * 110.50751 * 83.33352 * 12 11 10 28 28 H 0.96998 * 119.99905 * 185.08724 * 1 2 3 29 29 H 1.09001 * 109.87677 * 300.39727 * 10 9 7 30 30 H 1.09000 * 109.87799 * 61.54179 * 10 9 7 31 31 H 1.08995 * 110.73676 * 139.84665 * 11 10 9 32 32 H 1.09001 * 110.73612 * 263.16462 * 11 10 9 33 33 H 1.08998 * 110.37503 * 275.52137 * 13 9 7 34 34 H 1.08993 * 110.37845 * 37.87132 * 13 9 7 35 35 H 1.09001 * 109.47156 * 55.90049 * 14 12 11 36 36 H 1.08998 * 109.47379 * 175.91416 * 14 12 11 37 37 H 1.08995 * 109.60245 * 186.94238 * 15 14 12 38 38 H 1.09008 * 109.59766 * 66.46518 * 15 14 12 39 39 H 1.08996 * 109.47164 * 321.94345 * 19 17 16 40 40 H 1.09004 * 109.47233 * 299.99665 * 20 19 17 41 41 H 1.09001 * 109.47495 * 59.99415 * 20 19 17 42 42 H 1.08996 * 109.47253 * 299.99418 * 21 20 19 43 43 H 1.09004 * 109.46842 * 179.97438 * 21 20 19 44 44 H 1.08996 * 109.47395 * 59.99484 * 22 21 20 45 45 H 1.09004 * 109.47233 * 299.99986 * 24 22 21 46 46 H 1.09001 * 109.47199 * 179.97438 * 24 22 21 47 47 H 1.09004 * 109.47022 * 299.99847 * 25 19 17 48 48 H 1.09006 * 109.47232 * 59.99588 * 25 19 17 49 49 H 1.09000 * 109.60150 * 185.89548 * 26 16 15 50 50 H 1.08998 * 109.60151 * 65.41162 * 26 16 15 51 51 H 1.08998 * 109.47513 * 184.08380 * 27 12 11 52 52 H 1.09003 * 109.47786 * 304.09278 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2912 2.7430 0.1383 5 1 3.2047 1.6382 1.1374 6 1 2.9973 1.7580 -1.2757 7 6 2.0102 -1.2022 -0.0005 8 1 1.4864 -2.1283 0.1846 9 7 3.3592 -1.2139 -0.2357 10 6 4.1663 -0.0572 -0.6529 11 6 5.6212 -0.5482 -0.8189 12 6 5.4503 -2.0700 -1.0155 13 6 4.2443 -2.3877 -0.1062 14 6 6.6899 -2.8115 -0.5389 15 6 7.8883 -2.4148 -1.4094 16 7 7.5353 -2.6241 -2.8202 17 6 8.3115 -3.3876 -3.6146 18 8 8.0617 -3.4810 -4.7977 19 6 9.4897 -4.1254 -3.0327 20 6 10.4901 -4.4467 -4.1449 21 6 11.6866 -5.1951 -3.5540 22 6 11.2062 -6.4964 -2.9087 23 9 12.3001 -7.1804 -2.3679 24 6 10.2058 -6.1751 -1.7965 25 6 9.0088 -5.4267 -2.3878 26 6 6.3217 -1.9877 -3.3505 27 6 5.1323 -2.3871 -2.4688 28 1 -0.4850 -0.8367 0.0745 29 1 3.7955 0.3306 -1.6017 30 1 4.1222 0.7201 0.1100 31 1 6.0837 -0.0953 -1.6958 32 1 6.2041 -0.3382 0.0779 33 1 4.5668 -2.5075 0.9280 34 1 3.7351 -3.2869 -0.4525 35 1 6.8927 -2.5502 0.4997 36 1 6.5234 -3.8858 -0.6176 37 1 8.7480 -3.0334 -1.1519 38 1 8.1282 -1.3643 -1.2445 39 1 9.9720 -3.5029 -2.2790 40 1 10.0079 -5.0692 -4.8986 41 1 10.8328 -3.5196 -4.6044 42 1 12.1688 -4.5723 -2.8006 43 1 12.3991 -5.4244 -4.3465 44 1 10.7240 -7.1192 -3.6621 45 1 10.6879 -5.5522 -1.0429 46 1 9.8631 -7.1022 -1.3370 47 1 8.2962 -5.1978 -1.5954 48 1 8.5265 -6.0492 -3.1415 49 1 6.1488 -2.3248 -4.3725 50 1 6.4406 -0.9043 -3.3354 51 1 4.9439 -3.4554 -2.5748 52 1 4.2479 -1.8296 -2.7773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035226551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:23 Heat of formation + Delta-G solvation = -92.286467 kcal Electronic energy + Delta-G solvation = -31232.602736 eV Core-core repulsion = 27145.322904 eV Total energy + Delta-G solvation = -4087.279832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.57418 -41.84914 -40.42136 -38.30425 -37.34456 -34.94444 -33.13213 -32.54535 -31.84693 -31.09681 -30.62011 -28.61663 -25.57011 -25.06726 -24.14510 -23.83746 -23.50980 -22.27782 -21.40477 -20.52791 -19.77685 -18.80400 -18.14977 -17.36886 -17.06907 -16.96430 -16.80915 -16.51685 -16.18296 -15.93395 -15.53172 -15.23752 -15.13278 -14.94172 -14.79950 -14.61513 -14.47978 -14.09315 -13.86783 -13.67798 -13.56199 -13.26730 -13.17093 -13.00315 -12.92487 -12.71325 -12.57772 -12.52954 -12.15226 -12.14911 -11.98528 -11.79439 -11.65678 -11.56546 -11.43988 -11.32475 -11.22651 -11.01431 -10.93672 -10.66735 -10.59750 -9.60293 -9.06669 -8.61638 -5.45335 1.37890 1.48765 1.60437 1.70548 2.01166 2.54364 3.15494 3.33003 3.36739 3.51905 3.55006 3.57664 3.72165 3.75899 3.85814 3.98115 4.04841 4.07568 4.11387 4.19880 4.25306 4.30265 4.33058 4.40266 4.45753 4.47720 4.61047 4.64719 4.72109 4.74905 4.76529 4.79222 4.87185 4.88784 4.91428 5.04029 5.05914 5.06651 5.10006 5.11259 5.12612 5.15079 5.24929 5.26070 5.38440 5.42443 5.45544 5.52804 5.62787 6.10427 6.46089 6.84870 7.18334 7.47853 8.11871 8.89333 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.002537 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.582420 B =11032.988834 C =11339.921308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.091 4.091 3 Si 1.122 2.878 4 H -0.318 1.318 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.305 4.305 8 H 0.041 0.959 9 N -0.633 5.633 10 C 0.085 3.915 11 C -0.108 4.108 12 C -0.058 4.058 13 C 0.141 3.859 14 C -0.111 4.111 15 C 0.104 3.896 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.588 6.588 19 C -0.103 4.103 20 C -0.095 4.095 21 C -0.136 4.136 22 C 0.082 3.918 23 F -0.229 7.229 24 C -0.135 4.135 25 C -0.103 4.103 26 C 0.119 3.881 27 C -0.105 4.105 28 H 0.244 0.756 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.024 0.976 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.054 0.946 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.753 -9.201 -3.548 31.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.282 4.282 3 Si 0.950 3.050 4 H -0.248 1.248 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.433 4.433 8 H 0.059 0.941 9 N -0.361 5.361 10 C -0.039 4.039 11 C -0.145 4.145 12 C -0.059 4.059 13 C 0.016 3.984 14 C -0.150 4.150 15 C -0.018 4.018 16 N -0.336 5.336 17 C 0.305 3.695 18 O -0.469 6.469 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.174 4.174 22 C 0.046 3.954 23 F -0.210 7.210 24 C -0.173 4.173 25 C -0.141 4.141 26 C -0.003 4.003 27 C -0.143 4.143 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.073 0.927 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 29.389 -7.669 -4.210 30.663 hybrid contribution -1.358 -1.989 0.071 2.410 sum 28.031 -9.658 -4.139 29.935 Atomic orbital electron populations 1.71021 1.06953 1.28547 1.55196 1.27197 0.96594 1.04792 0.99620 0.83248 0.72031 0.71295 0.78378 1.24764 1.20501 1.17825 1.20066 0.83629 0.94097 1.45552 0.94103 1.44911 1.03463 1.07267 1.80466 1.22309 0.93514 0.91110 0.96976 1.22655 0.93647 0.94684 1.03550 1.21024 0.95032 0.95718 0.94140 1.21762 0.90378 0.89250 0.96972 1.21735 0.92347 1.00297 1.00603 1.22145 0.97987 1.03757 0.77867 1.48229 1.24486 1.48875 1.12042 1.21210 0.84306 0.78182 0.85816 1.90675 1.73270 1.65029 1.17907 1.21466 0.93323 0.97746 0.99837 1.21253 0.94369 1.00989 0.96699 1.22066 0.98099 0.95576 1.01623 1.21790 0.84045 0.93274 0.96288 1.92787 1.57921 1.82047 1.88255 1.22069 0.95236 1.02209 0.97745 1.21421 0.98007 0.94030 1.00597 1.21501 0.83562 0.97842 0.97436 1.21512 0.97423 1.00791 0.94572 0.94708 0.95070 0.95227 0.88859 0.88698 0.94838 0.95755 0.88317 0.91042 0.86303 0.89228 0.85702 0.92152 0.91052 0.89319 0.90223 0.89828 0.88909 0.89907 0.89373 0.92203 0.90963 0.90227 0.92697 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.12 13.70 21.65 0.30 -63.82 16 2 C -0.09 -5.51 5.50 84.86 0.47 -5.04 16 3 Si 1.12 54.40 24.50 68.60 1.68 56.08 16 4 H -0.32 -16.03 7.11 99.48 0.71 -15.32 16 5 H -0.28 -12.33 6.45 99.48 0.64 -11.69 16 6 H -0.25 -10.82 5.46 99.48 0.54 -10.28 16 7 C -0.30 -17.89 10.60 84.03 0.89 -17.00 16 8 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 9 N -0.63 -29.90 3.35 -692.32 -2.32 -32.22 16 10 C 0.08 3.35 4.26 86.76 0.37 3.72 16 11 C -0.11 -2.80 4.92 31.56 0.16 -2.65 16 12 C -0.06 -1.49 0.55 -51.84 -0.03 -1.52 16 13 C 0.14 5.16 6.16 86.63 0.53 5.70 16 14 C -0.11 -1.76 4.84 30.41 0.15 -1.62 16 15 C 0.10 1.19 5.73 86.41 0.50 1.69 16 16 N -0.60 -11.06 2.96 -818.28 -2.42 -13.48 16 17 C 0.52 10.39 6.83 87.66 0.60 10.99 16 18 O -0.59 -17.29 15.48 -3.05 -0.05 -17.34 16 19 C -0.10 -1.22 1.66 -11.54 -0.02 -1.24 16 20 C -0.09 -1.21 4.70 30.60 0.14 -1.07 16 21 C -0.14 -1.30 5.66 30.59 0.17 -1.13 16 22 C 0.08 0.91 3.88 30.59 0.12 1.03 16 23 F -0.23 -3.66 17.08 44.97 0.77 -2.89 16 24 C -0.13 -1.13 5.66 30.61 0.17 -0.96 16 25 C -0.10 -1.06 5.02 30.61 0.15 -0.91 16 26 C 0.12 2.79 6.11 86.41 0.53 3.32 16 27 C -0.10 -2.90 4.87 30.42 0.15 -2.76 16 28 H 0.24 16.21 8.73 -92.71 -0.81 15.40 16 29 H 0.03 1.33 6.16 -2.39 -0.01 1.32 16 30 H 0.03 1.24 3.92 -2.39 -0.01 1.23 16 31 H 0.09 2.02 6.17 -2.39 -0.01 2.00 16 32 H 0.09 2.00 7.98 -2.39 -0.02 1.99 16 33 H 0.03 1.17 8.00 -2.39 -0.02 1.16 16 34 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 35 H 0.10 1.28 8.09 -2.39 -0.02 1.26 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 0.64 5.07 -2.39 -0.01 0.63 16 38 H 0.09 0.85 7.62 -2.38 -0.02 0.83 16 39 H 0.13 0.78 6.42 -2.39 -0.02 0.77 16 40 H 0.06 1.00 7.89 -2.38 -0.02 0.98 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.09 0.80 7.54 -2.38 -0.02 0.78 16 48 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.07 1.97 7.02 -2.39 -0.02 1.95 16 50 H 0.08 1.71 6.55 -2.39 -0.02 1.70 16 51 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.05 1.80 7.82 -2.39 -0.02 1.78 16 Total: -1.00 -78.88 377.38 3.64 -75.23 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.63 Total: 7.87 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.05 Total: -9.43 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.44 Total: -109.53 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.77 Total: -2.89 kcal Atomic # 14 Polarization: 54.40 SS G_CDS: 1.68 Total: 56.08 kcal Total: -78.88 3.64 -75.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035226551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.054 kcal (2) G-P(sol) polarization free energy of solvation -78.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds