Wall clock time and date at job start Tue Mar 31 2020 21:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47053 * 264.53064 * 3 2 1 5 5 H 1.48495 * 109.47246 * 24.53626 * 3 2 1 6 6 H 1.48501 * 109.46895 * 144.53286 * 3 2 1 7 7 C 1.38810 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00169 * 337.61822 * 7 2 1 9 9 N 1.36935 * 119.99648 * 157.62225 * 7 2 1 10 10 C 1.47432 * 125.65288 * 341.47370 * 9 7 2 11 11 C 1.55119 * 104.94355 * 204.04215 * 10 9 7 12 12 C 1.55158 * 101.48560 * 323.21821 * 11 10 9 13 13 H 1.09001 * 110.71850 * 276.83643 * 12 11 10 14 14 C 1.52997 * 110.72150 * 153.73945 * 12 11 10 15 15 C 1.53038 * 109.45061 * 62.40275 * 14 12 11 16 16 C 1.53191 * 109.31412 * 181.38006 * 15 14 12 17 17 N 1.46928 * 108.77576 * 305.36865 * 16 15 14 18 18 C 1.34775 * 120.62723 * 233.62833 * 17 16 15 19 19 O 1.21288 * 119.99816 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00263 * 359.97438 * 18 17 16 21 21 F 1.39901 * 110.01725 * 54.30203 * 20 18 17 22 22 C 1.54259 * 110.03600 * 292.90692 * 20 18 17 23 23 C 1.54967 * 104.16447 * 217.13653 * 22 20 18 24 24 C 1.54896 * 102.77288 * 37.88610 * 23 22 20 25 25 C 1.53878 * 110.03092 * 175.68692 * 20 18 17 26 26 C 1.46920 * 118.73599 * 53.60685 * 17 16 15 27 27 C 1.53037 * 109.46275 * 182.46756 * 14 12 11 28 28 C 1.47028 * 125.64732 * 161.51537 * 9 7 2 29 29 H 0.96994 * 119.99853 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.35768 * 323.00313 * 10 9 7 31 31 H 1.08993 * 110.36423 * 85.21412 * 10 9 7 32 32 H 1.09001 * 111.15829 * 205.12751 * 11 10 9 33 33 H 1.08998 * 110.93819 * 81.21608 * 11 10 9 34 34 H 1.09010 * 109.45970 * 302.44365 * 14 12 11 35 35 H 1.09003 * 109.49971 * 301.33573 * 15 14 12 36 36 H 1.09001 * 109.49494 * 61.42900 * 15 14 12 37 37 H 1.08998 * 109.58960 * 185.58158 * 16 15 14 38 38 H 1.09003 * 109.70523 * 65.22752 * 16 15 14 39 39 H 1.09001 * 110.48421 * 335.78665 * 22 20 18 40 40 H 1.08998 * 110.48346 * 98.42686 * 22 20 18 41 41 H 1.09000 * 110.71780 * 279.57476 * 23 22 20 42 42 H 1.08993 * 110.76842 * 156.22250 * 23 22 20 43 43 H 1.08997 * 110.48219 * 203.40504 * 24 23 22 44 44 H 1.08999 * 110.48187 * 80.76415 * 24 23 22 45 45 H 1.08993 * 110.03709 * 238.57205 * 25 20 18 46 46 H 1.09006 * 110.03551 * 0.02562 * 25 20 18 47 47 H 1.09004 * 109.58334 * 186.59846 * 26 17 16 48 48 H 1.09001 * 109.70686 * 66.25732 * 26 17 16 49 49 H 1.08995 * 109.49535 * 298.58055 * 27 14 12 50 50 H 1.09007 * 109.49318 * 58.64652 * 27 14 12 51 51 H 1.09001 * 109.88289 * 59.48901 * 28 9 7 52 52 H 1.08999 * 110.00722 * 298.39297 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6133 1.9797 -1.3937 5 1 1.3947 2.6832 0.5814 6 1 3.4852 1.4763 0.8124 7 6 2.0103 -1.2022 0.0005 8 1 1.5313 -2.1021 0.3571 9 7 3.3023 -1.2470 -0.4509 10 6 3.9505 -0.2333 -1.3029 11 6 5.0994 -0.9893 -2.0204 12 6 5.5798 -1.9531 -0.9034 13 1 6.2743 -1.4490 -0.2314 14 6 6.2243 -3.2026 -1.5069 15 6 7.4631 -2.7997 -2.3101 16 6 8.0861 -4.0488 -2.9412 17 7 8.3473 -5.0335 -1.8824 18 6 9.5751 -5.5680 -1.7296 19 8 9.7781 -6.3796 -0.8514 20 6 10.6956 -5.1573 -2.6497 21 9 10.8346 -3.7652 -2.6434 22 6 10.4118 -5.6536 -4.0824 23 6 11.8046 -6.0629 -4.6248 24 6 12.4820 -6.6974 -3.3848 25 6 12.0116 -5.8202 -2.2063 26 6 7.2448 -5.4239 -0.9933 27 6 6.6313 -4.1594 -0.3840 28 6 4.2726 -2.3145 -0.1670 29 1 -0.4849 0.8400 -0.0004 30 1 3.2410 0.1599 -2.0311 31 1 4.3530 0.5745 -0.6919 32 1 5.8956 -0.3060 -2.3159 33 1 4.7235 -1.5439 -2.8801 34 1 5.5102 -3.6978 -2.1650 35 1 7.1761 -2.1000 -3.0951 36 1 8.1881 -2.3266 -1.6477 37 1 9.0225 -3.7823 -3.4314 38 1 7.3985 -4.4728 -3.6730 39 1 9.7425 -6.5137 -4.0626 40 1 9.9868 -4.8521 -4.6866 41 1 12.3593 -5.1875 -4.9625 42 1 11.7072 -6.7933 -5.4279 43 1 13.5670 -6.6575 -3.4808 44 1 12.1474 -7.7263 -3.2520 45 1 12.7586 -5.0575 -1.9871 46 1 11.8396 -6.4394 -1.3258 47 1 7.6260 -6.0648 -0.1983 48 1 6.4859 -5.9606 -1.5627 49 1 7.3640 -3.6736 0.2602 50 1 5.7521 -4.4272 0.2022 51 1 3.8923 -3.2681 -0.5332 52 1 4.4562 -2.3760 0.9056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039139239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:49 Heat of formation + Delta-G solvation = -89.562144 kcal Electronic energy + Delta-G solvation = -30975.445599 eV Core-core repulsion = 26888.283903 eV Total energy + Delta-G solvation = -4087.161697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.10294 -41.43384 -40.06617 -38.41352 -37.65820 -35.31760 -33.86796 -32.41747 -31.24785 -30.20288 -29.86929 -29.25526 -26.95611 -25.26169 -24.37882 -23.16178 -22.34622 -21.89959 -21.44036 -20.81067 -20.13122 -18.91442 -18.83576 -17.62519 -17.22112 -17.07866 -16.67244 -16.36918 -16.02775 -15.73159 -15.44512 -15.36041 -15.19858 -14.93070 -14.76551 -14.44299 -14.39992 -14.24803 -14.02353 -13.88297 -13.50077 -13.36312 -13.08945 -13.01098 -12.84833 -12.60517 -12.54979 -12.32494 -12.21663 -12.20033 -12.11276 -12.00464 -11.87551 -11.71697 -11.66126 -11.51337 -11.33972 -11.18016 -11.10282 -10.80946 -10.72095 -9.76846 -9.04303 -8.19567 -5.45062 1.25618 1.27809 1.36800 1.45824 1.77358 2.39677 2.98319 3.03598 3.21911 3.34028 3.36111 3.56677 3.61595 3.72303 3.80061 3.98942 4.07079 4.17605 4.22826 4.26278 4.33320 4.35874 4.38829 4.41669 4.43783 4.48821 4.53781 4.64146 4.70635 4.76551 4.81856 4.85291 4.86080 4.90926 4.96167 4.96902 5.03987 5.08621 5.09547 5.13045 5.16058 5.18427 5.24387 5.27053 5.37461 5.37760 5.50091 5.58687 5.68690 6.09040 6.21182 6.77385 6.86196 7.54235 8.11897 9.00571 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.002370 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.304144 B =11813.478571 C =12213.750645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.040 4.040 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.308 1.308 6 H -0.274 1.274 7 C -0.235 4.235 8 H 0.057 0.943 9 N -0.630 5.630 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.081 4.081 13 H 0.076 0.924 14 C -0.065 4.065 15 C -0.122 4.122 16 C 0.092 3.908 17 N -0.595 5.595 18 C 0.496 3.504 19 O -0.565 6.565 20 C 0.101 3.899 21 F -0.194 7.194 22 C -0.140 4.140 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.146 4.146 26 C 0.112 3.888 27 C -0.125 4.125 28 C 0.136 3.864 29 H 0.262 0.738 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.034 0.966 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.415 -12.037 -13.432 33.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.234 4.234 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.237 1.237 6 H -0.200 1.200 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.357 5.357 10 C -0.026 4.026 11 C -0.147 4.147 12 C -0.100 4.100 13 H 0.094 0.906 14 C -0.084 4.084 15 C -0.160 4.160 16 C -0.029 4.029 17 N -0.326 5.326 18 C 0.283 3.717 19 O -0.445 6.445 20 C 0.080 3.920 21 F -0.174 7.174 22 C -0.177 4.177 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.184 4.184 26 C -0.010 4.010 27 C -0.163 4.163 28 C 0.011 3.989 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.094 0.906 51 H 0.052 0.948 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 28.293 -12.346 -12.927 33.467 hybrid contribution -0.664 1.123 1.040 1.668 sum 27.629 -11.224 -11.888 32.103 Atomic orbital electron populations 1.69973 1.07150 1.27230 1.56064 1.25652 0.95854 1.00771 1.01130 0.85903 0.77527 0.80198 0.78592 1.19183 1.23670 1.20024 1.18606 0.86508 0.94273 1.36962 0.92514 1.44966 1.09325 1.24141 1.57297 1.22139 0.95136 0.92569 0.92797 1.22788 0.96517 0.98076 0.97320 1.22122 0.94674 0.96432 0.96763 0.90607 1.21056 0.97012 0.93880 0.96440 1.21920 0.96239 0.97433 1.00455 1.22324 1.03355 0.88158 0.89088 1.48228 1.08987 1.42054 1.33372 1.21204 0.84464 0.81454 0.84601 1.90670 1.82842 1.35851 1.35128 1.21901 0.95371 0.76646 0.98095 1.92864 1.96534 1.30479 1.97525 1.23137 1.00535 1.03194 0.90859 1.22570 0.93579 1.01725 0.97748 1.22369 1.01702 0.98719 0.92925 1.22772 0.93651 1.00747 1.01275 1.21658 0.88410 0.96932 0.94009 1.21921 1.00740 0.95552 0.98120 1.21569 0.89132 0.91276 0.96891 0.92885 0.94414 0.96483 0.88277 0.89967 0.90157 0.88356 0.92054 0.87541 0.88977 0.89432 0.87573 0.89945 0.88839 0.89302 0.91150 0.89438 0.90103 0.90479 0.89650 0.92431 0.90572 0.94760 0.96418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.54 13.97 21.65 0.30 -61.24 16 2 C -0.04 -2.40 5.43 84.86 0.46 -1.94 16 3 Si 0.95 48.02 24.27 68.60 1.66 49.68 16 4 H -0.27 -12.50 6.49 99.48 0.65 -11.85 16 5 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 6 H -0.27 -13.57 6.66 99.48 0.66 -12.91 16 7 C -0.23 -13.86 10.57 84.03 0.89 -12.97 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 N -0.63 -30.63 3.21 -691.54 -2.22 -32.85 16 10 C 0.10 4.08 4.70 86.93 0.41 4.49 16 11 C -0.11 -3.09 5.50 32.06 0.18 -2.91 16 12 C -0.08 -2.23 2.48 -9.61 -0.02 -2.26 16 13 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.07 -1.34 1.53 -10.77 -0.02 -1.35 16 15 C -0.12 -1.96 5.19 30.67 0.16 -1.80 16 16 C 0.09 1.27 5.54 86.36 0.48 1.75 16 17 N -0.60 -11.27 2.97 -818.92 -2.43 -13.71 16 18 C 0.50 10.88 6.68 87.66 0.59 11.47 16 19 O -0.57 -16.32 14.63 -3.06 -0.04 -16.37 16 20 C 0.10 1.65 1.08 -10.82 -0.01 1.64 16 21 F -0.19 -3.46 14.71 44.97 0.66 -2.79 16 22 C -0.14 -1.41 5.19 31.69 0.16 -1.25 16 23 C -0.12 -0.88 6.91 31.91 0.22 -0.66 16 24 C -0.12 -1.19 6.83 31.67 0.22 -0.97 16 25 C -0.15 -2.26 6.25 31.32 0.20 -2.07 16 26 C 0.11 2.24 6.43 86.36 0.56 2.80 16 27 C -0.13 -2.67 5.20 30.67 0.16 -2.51 16 28 C 0.14 5.17 5.88 86.73 0.51 5.68 16 29 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.04 1.70 6.64 -2.39 -0.02 1.69 16 31 H 0.02 0.75 5.57 -2.39 -0.01 0.74 16 32 H 0.10 2.18 8.08 -2.39 -0.02 2.16 16 33 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 34 H 0.08 1.65 8.12 -2.38 -0.02 1.63 16 35 H 0.10 1.29 7.27 -2.39 -0.02 1.27 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.28 3.65 -2.39 -0.01 1.27 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 0.91 7.85 -2.39 -0.02 0.89 16 40 H 0.11 0.75 6.92 -2.39 -0.02 0.74 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 1.25 8.02 -2.39 -0.02 1.23 16 46 H 0.08 1.62 6.40 -2.38 -0.02 1.61 16 47 H 0.08 1.79 7.01 -2.38 -0.02 1.78 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.08 1.73 7.27 -2.38 -0.02 1.71 16 51 H 0.03 1.29 7.67 -2.39 -0.02 1.27 16 52 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -74.99 381.71 3.85 -71.14 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.79 Total: 8.99 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.13 Total: -2.86 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.35 Total: -107.80 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.04 Total: -16.37 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.66 Total: -2.79 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.66 Total: 49.68 kcal Total: -74.99 3.85 -71.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039139239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.420 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds