Wall clock time and date at job start Tue Mar 31 2020 21:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00157 * 2 1 4 4 H 1.48506 * 109.47129 * 270.00059 * 3 2 1 5 5 H 1.48492 * 109.47084 * 30.00392 * 3 2 1 6 6 H 1.48503 * 109.46722 * 150.00464 * 3 2 1 7 7 C 1.38809 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00073 * 213.87205 * 7 2 1 9 9 N 1.36937 * 120.00141 * 33.87363 * 7 2 1 10 10 C 1.47421 * 125.65114 * 12.64680 * 9 7 2 11 11 C 1.55129 * 104.72659 * 155.81954 * 10 9 7 12 12 C 1.55156 * 101.48594 * 37.29133 * 11 10 9 13 13 H 1.09001 * 110.86992 * 82.76725 * 12 11 10 14 14 C 1.52999 * 110.72570 * 205.96994 * 12 11 10 15 15 C 1.53032 * 109.45986 * 295.05148 * 14 12 11 16 16 C 1.53191 * 109.31217 * 178.61113 * 15 14 12 17 17 N 1.46916 * 108.77780 * 54.63358 * 16 15 14 18 18 C 1.34779 * 120.63589 * 126.41478 * 17 16 15 19 19 O 1.21281 * 119.99510 * 353.71010 * 18 17 16 20 20 C 1.50698 * 120.00523 * 173.71396 * 18 17 16 21 21 F 1.39899 * 110.01475 * 56.07184 * 20 18 17 22 22 C 1.54271 * 110.02966 * 294.63403 * 20 18 17 23 23 C 1.54894 * 104.19212 * 217.10359 * 22 20 18 24 24 C 1.54889 * 102.74703 * 37.94220 * 23 22 20 25 25 C 1.53873 * 110.03394 * 177.46472 * 20 18 17 26 26 C 1.46933 * 118.73803 * 306.39322 * 17 16 15 27 27 C 1.53037 * 109.46422 * 174.97794 * 14 12 11 28 28 C 1.47030 * 125.64840 * 192.95318 * 9 7 2 29 29 H 0.96988 * 120.00548 * 186.81418 * 1 2 3 30 30 H 1.09003 * 110.36714 * 274.75045 * 10 9 7 31 31 H 1.09001 * 110.36373 * 37.06703 * 10 9 7 32 32 H 1.09002 * 111.18727 * 279.19488 * 11 10 9 33 33 H 1.08995 * 110.90852 * 155.27638 * 11 10 9 34 34 H 1.09010 * 109.45507 * 55.00712 * 14 12 11 35 35 H 1.08998 * 109.49866 * 298.56363 * 15 14 12 36 36 H 1.09007 * 109.50060 * 58.65922 * 15 14 12 37 37 H 1.08997 * 109.58789 * 294.84023 * 16 15 14 38 38 H 1.09009 * 109.70379 * 174.49409 * 16 15 14 39 39 H 1.09003 * 110.48521 * 335.78387 * 22 20 18 40 40 H 1.09000 * 110.48311 * 98.42700 * 22 20 18 41 41 H 1.08996 * 110.75492 * 279.62479 * 23 22 20 42 42 H 1.08998 * 110.90873 * 156.33027 * 23 22 20 43 43 H 1.09001 * 110.48135 * 203.37427 * 24 23 22 44 44 H 1.09003 * 110.48641 * 80.73646 * 24 23 22 45 45 H 1.09000 * 110.03381 * 238.56733 * 25 20 18 46 46 H 1.09000 * 110.03029 * 359.95305 * 25 20 18 47 47 H 1.09007 * 109.58345 * 293.81786 * 26 17 16 48 48 H 1.09000 * 109.70296 * 173.46915 * 26 17 16 49 49 H 1.08999 * 109.49612 * 301.33819 * 27 14 12 50 50 H 1.08993 * 109.49633 * 61.43463 * 27 14 12 51 51 H 1.08998 * 109.87923 * 300.44308 * 28 9 7 52 52 H 1.09008 * 109.87745 * 61.45061 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 2.9527 -1.2819 0.5207 9 7 1.4997 -2.2871 -0.6620 10 6 0.3798 -2.2605 -1.6202 11 6 0.5942 -3.5113 -2.5124 12 6 1.1220 -4.5412 -1.4788 13 1 0.2975 -5.0074 -0.9394 14 6 1.9863 -5.6016 -2.1639 15 6 1.1220 -6.4204 -3.1255 16 6 1.9975 -7.4580 -3.8351 17 7 2.6972 -8.2590 -2.8216 18 6 2.6188 -9.6045 -2.8352 19 8 1.8768 -10.1607 -3.6169 20 6 3.4529 -10.4177 -1.8792 21 9 3.1973 -10.0195 -0.5627 22 6 4.9508 -10.2423 -2.2040 23 6 5.5612 -11.6429 -1.9493 24 6 4.4569 -12.5966 -2.4689 25 6 3.1389 -11.9146 -2.0476 26 6 3.4845 -7.5655 -1.7929 27 6 2.5924 -6.5267 -1.1062 28 6 1.9738 -3.6726 -0.5294 29 1 -0.4850 -0.8340 0.0997 30 1 -0.5721 -2.3263 -1.0932 31 1 0.4183 -1.3535 -2.2236 32 1 1.3366 -3.3200 -3.2872 33 1 -0.3474 -3.8436 -2.9492 34 1 2.7863 -5.1136 -2.7209 35 1 0.3367 -6.9285 -2.5659 36 1 0.6720 -5.7575 -3.8646 37 1 2.7264 -6.9505 -4.4669 38 1 1.3731 -8.1084 -4.4478 39 1 5.0837 -9.9520 -3.2463 40 1 5.4009 -9.5036 -1.5409 41 1 5.7377 -11.7996 -0.8852 42 1 6.4831 -11.7744 -2.5157 43 1 4.5467 -13.5761 -1.9992 44 1 4.5100 -12.6866 -3.5540 45 1 2.7882 -12.3311 -1.1034 46 1 2.3825 -12.0528 -2.8203 47 1 4.3348 -7.0667 -2.2582 48 1 3.8415 -8.2850 -1.0561 49 1 3.1889 -5.9395 -0.4081 50 1 1.7933 -7.0339 -0.5656 51 1 3.0244 -3.7336 -0.8134 52 1 1.8478 -4.0106 0.4993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039139241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:53 Heat of formation + Delta-G solvation = -94.821889 kcal Electronic energy + Delta-G solvation = -30926.640895 eV Core-core repulsion = 26839.251118 eV Total energy + Delta-G solvation = -4087.389776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.16494 -41.45678 -40.07227 -38.43026 -37.67728 -35.48835 -33.64872 -32.37124 -31.07005 -29.89256 -29.87786 -29.20979 -26.73898 -25.40944 -24.41962 -23.18306 -21.98234 -21.88032 -21.48395 -20.89093 -20.16871 -19.52314 -18.84326 -17.65573 -17.17100 -16.64906 -16.46744 -16.38299 -15.99080 -15.80600 -15.63777 -15.26430 -15.18134 -14.92160 -14.85988 -14.53563 -14.43670 -14.23985 -14.07626 -13.74596 -13.40976 -13.20424 -13.06489 -12.73237 -12.62426 -12.56519 -12.44179 -12.34350 -12.23281 -12.14310 -12.10172 -11.91065 -11.89547 -11.85803 -11.64807 -11.52812 -11.47928 -11.26553 -11.19225 -10.74639 -10.46915 -9.79242 -9.03906 -8.38926 -5.29313 1.22080 1.56595 1.63687 1.74964 1.82214 2.64038 2.95502 3.11514 3.19457 3.33226 3.49819 3.56030 3.57647 3.67574 3.79448 3.98722 4.03856 4.17072 4.20757 4.24743 4.31273 4.34069 4.36313 4.38670 4.40573 4.48484 4.50356 4.62676 4.69539 4.73727 4.78801 4.82143 4.85642 4.88445 4.92359 4.95530 5.02229 5.02850 5.06717 5.13439 5.15074 5.15851 5.21608 5.27846 5.33090 5.35890 5.46913 5.52925 5.67481 6.17320 6.28173 6.82822 6.88536 7.70826 8.30780 8.93832 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.002318 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.898111 B =12077.583052 C =12622.034735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.079 4.079 3 Si 1.112 2.888 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.351 4.351 8 H 0.060 0.940 9 N -0.627 5.627 10 C 0.144 3.856 11 C -0.111 4.111 12 C -0.078 4.078 13 H 0.066 0.934 14 C -0.063 4.063 15 C -0.120 4.120 16 C 0.110 3.890 17 N -0.596 5.596 18 C 0.499 3.501 19 O -0.562 6.562 20 C 0.098 3.902 21 F -0.195 7.195 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.146 4.146 26 C 0.095 3.905 27 C -0.126 4.126 28 C 0.139 3.861 29 H 0.252 0.748 30 H -0.004 1.004 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.106 0.894 49 H 0.080 0.920 50 H 0.056 0.944 51 H 0.036 0.964 52 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -25.705 -7.880 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.275 4.275 3 Si 0.937 3.063 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.078 0.922 9 N -0.354 5.354 10 C 0.018 3.982 11 C -0.149 4.149 12 C -0.097 4.097 13 H 0.084 0.916 14 C -0.082 4.082 15 C -0.158 4.158 16 C -0.011 4.011 17 N -0.328 5.328 18 C 0.285 3.715 19 O -0.441 6.441 20 C 0.077 3.923 21 F -0.176 7.176 22 C -0.176 4.176 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.184 4.184 26 C -0.027 4.027 27 C -0.165 4.165 28 C 0.015 3.985 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.124 0.876 49 H 0.099 0.901 50 H 0.074 0.926 51 H 0.054 0.946 52 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 11.592 -24.266 -8.273 28.136 hybrid contribution -0.686 -1.103 0.762 1.506 sum 10.906 -25.368 -7.511 28.617 Atomic orbital electron populations 1.70870 1.07887 1.29115 1.50107 1.27083 0.96273 1.04451 0.99676 0.82904 0.74271 0.72079 0.77059 1.21089 1.22134 1.19532 1.19999 1.03358 0.91226 1.33317 0.92182 1.44963 1.38806 1.03725 1.47947 1.21490 0.89583 0.96705 0.90400 1.22781 1.01648 0.93702 0.96791 1.22068 0.97485 0.94506 0.95646 0.91563 1.21036 0.97268 0.94029 0.95845 1.21887 0.97761 0.97160 0.99022 1.21737 0.96280 0.92965 0.90149 1.48216 1.49403 1.04914 1.30226 1.21134 0.82311 0.83037 0.85005 1.90662 1.39729 1.71047 1.42661 1.21973 0.97913 0.96012 0.76398 1.92840 1.95496 1.91750 1.37491 1.23085 0.89395 1.01110 1.04053 1.22553 0.98652 0.91883 1.02580 1.22366 0.92103 0.99476 1.01660 1.22772 1.01144 0.90280 1.04205 1.22260 0.93837 0.96052 0.90552 1.21916 0.99700 0.96818 0.98021 1.21498 0.96912 0.83978 0.96138 0.93851 0.98616 0.96453 0.90394 0.89518 0.90035 0.92688 0.89225 0.89207 0.89944 0.89222 0.88037 0.90172 0.88735 0.89275 0.90911 0.89552 0.89862 0.88979 0.87616 0.90121 0.92558 0.94613 0.97636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.23 12.86 21.65 0.28 -58.95 16 2 C -0.08 -4.63 4.96 84.86 0.42 -4.21 16 3 Si 1.11 52.11 30.03 68.60 2.06 54.17 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.35 -20.43 9.96 84.03 0.84 -19.59 16 8 H 0.06 3.48 8.02 -2.91 -0.02 3.46 16 9 N -0.63 -32.71 3.32 -691.53 -2.30 -35.00 16 10 C 0.14 6.91 5.36 86.93 0.47 7.38 16 11 C -0.11 -3.75 5.62 32.06 0.18 -3.57 16 12 C -0.08 -2.46 2.49 -9.61 -0.02 -2.48 16 13 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.06 -1.45 1.52 -10.77 -0.02 -1.47 16 15 C -0.12 -2.47 5.21 30.67 0.16 -2.31 16 16 C 0.11 2.12 6.44 86.36 0.56 2.67 16 17 N -0.60 -11.90 2.97 -818.91 -2.43 -14.33 16 18 C 0.50 11.31 6.66 87.66 0.58 11.90 16 19 O -0.56 -16.21 14.63 -3.03 -0.04 -16.25 16 20 C 0.10 1.74 1.08 -10.82 -0.01 1.73 16 21 F -0.20 -3.95 14.49 44.97 0.65 -3.30 16 22 C -0.14 -1.61 5.26 31.67 0.17 -1.45 16 23 C -0.12 -1.03 6.91 31.89 0.22 -0.81 16 24 C -0.12 -1.25 6.83 31.67 0.22 -1.04 16 25 C -0.15 -2.38 6.25 31.32 0.20 -2.18 16 26 C 0.09 1.61 5.51 86.36 0.48 2.09 16 27 C -0.13 -2.70 5.17 30.67 0.16 -2.54 16 28 C 0.14 5.69 5.83 86.73 0.51 6.20 16 29 H 0.25 16.29 6.53 -92.72 -0.61 15.68 16 30 H 0.00 -0.21 7.03 -2.39 -0.02 -0.22 16 31 H 0.02 0.92 7.86 -2.39 -0.02 0.90 16 32 H 0.08 2.45 8.04 -2.39 -0.02 2.43 16 33 H 0.09 2.50 8.09 -2.39 -0.02 2.48 16 34 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.69 7.37 -2.38 -0.02 1.67 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.78 7.00 -2.38 -0.02 1.76 16 39 H 0.09 1.02 7.85 -2.39 -0.02 1.00 16 40 H 0.10 0.97 7.16 -2.39 -0.02 0.95 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 1.33 8.02 -2.39 -0.02 1.31 16 46 H 0.08 1.70 6.40 -2.39 -0.02 1.68 16 47 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.11 1.69 3.87 -2.39 -0.01 1.68 16 49 H 0.08 1.78 7.11 -2.39 -0.02 1.76 16 50 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.04 1.39 7.56 -2.39 -0.02 1.37 16 52 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 Total: -1.00 -73.99 388.12 4.36 -69.63 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.06 Total: 13.72 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.09 Total: -9.68 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.45 Total: -108.28 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.04 Total: -16.25 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.65 Total: -3.30 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.17 kcal Total: -73.99 4.36 -69.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039139241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.191 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds