Wall clock time and date at job start Tue Mar 31 2020 21:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00392 * 2 1 4 4 H 1.48498 * 109.47264 * 233.97509 * 3 2 1 5 5 H 1.48498 * 109.47060 * 353.97506 * 3 2 1 6 6 H 1.48499 * 109.46982 * 113.97596 * 3 2 1 7 7 C 1.38817 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99894 * 14.51387 * 7 2 1 9 9 N 1.36930 * 119.99914 * 194.51729 * 7 2 1 10 10 C 1.47024 * 125.65100 * 5.67706 * 9 7 2 11 11 C 1.54330 * 107.27044 * 178.85069 * 10 9 7 12 12 C 1.55164 * 103.02042 * 338.13875 * 11 10 9 13 13 H 1.08993 * 111.03726 * 277.22058 * 12 11 10 14 14 C 1.52994 * 111.00735 * 153.37776 * 12 11 10 15 15 C 1.53036 * 109.46265 * 186.41724 * 14 12 11 16 16 C 1.53190 * 109.31232 * 178.61668 * 15 14 12 17 17 N 1.46923 * 108.77582 * 54.63854 * 16 15 14 18 18 C 1.34778 * 120.62946 * 126.41297 * 17 16 15 19 19 O 1.21284 * 119.99743 * 182.65303 * 18 17 16 20 20 C 1.50700 * 120.00204 * 2.65393 * 18 17 16 21 21 C 1.53006 * 112.84402 * 280.16474 * 20 18 17 22 22 F 1.39894 * 109.47327 * 301.17067 * 21 20 18 23 23 C 1.53773 * 113.61715 * 148.85756 * 20 18 17 24 24 C 1.53777 * 87.08351 * 220.01643 * 23 20 18 25 25 C 1.53781 * 87.08026 * 25.43269 * 24 23 20 26 26 C 1.46922 * 118.73700 * 306.38957 * 17 16 15 27 27 C 1.53050 * 109.45697 * 66.35264 * 14 12 11 28 28 C 1.47424 * 125.65103 * 185.98280 * 9 7 2 29 29 H 0.96999 * 120.00309 * 185.16421 * 1 2 3 30 30 H 1.09007 * 109.88056 * 298.39504 * 10 9 7 31 31 H 1.08998 * 109.88161 * 59.55363 * 10 9 7 32 32 H 1.08998 * 110.85226 * 219.67525 * 11 10 9 33 33 H 1.08996 * 110.51650 * 96.44847 * 11 10 9 34 34 H 1.09000 * 109.46314 * 306.38320 * 14 12 11 35 35 H 1.09001 * 109.49917 * 298.57016 * 15 14 12 36 36 H 1.09004 * 109.49339 * 58.66984 * 15 14 12 37 37 H 1.09000 * 109.58647 * 294.84813 * 16 15 14 38 38 H 1.09001 * 109.58743 * 174.42520 * 16 15 14 39 39 H 1.08994 * 109.47121 * 61.17807 * 21 20 18 40 40 H 1.09010 * 109.46711 * 181.17663 * 21 20 18 41 41 H 1.09003 * 113.61813 * 334.56928 * 23 20 18 42 42 H 1.09010 * 113.61493 * 105.46909 * 23 20 18 43 43 H 1.09004 * 113.61806 * 270.88554 * 24 23 20 44 44 H 1.09002 * 113.61623 * 139.97977 * 24 23 20 45 45 H 1.09000 * 113.61733 * 220.02122 * 25 24 23 46 46 H 1.09000 * 113.69358 * 89.12456 * 25 24 23 47 47 H 1.08996 * 109.59080 * 293.81955 * 26 17 16 48 48 H 1.09007 * 109.70056 * 173.46350 * 26 17 16 49 49 H 1.09002 * 109.49384 * 301.33628 * 27 14 12 50 50 H 1.08997 * 109.49602 * 61.40118 * 27 14 12 51 51 H 1.09002 * 110.36512 * 322.93689 * 28 9 7 52 52 H 1.09000 * 110.36936 * 85.14268 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.2109 1.6346 -1.1323 5 1 1.2921 2.7426 -0.1470 6 1 2.9905 1.7618 1.2793 7 6 2.0102 -1.2022 -0.0005 8 1 1.4960 -2.1225 -0.2354 9 7 3.3467 -1.2213 0.2967 10 6 4.1411 -0.0689 0.7467 11 6 5.5811 -0.5701 0.9852 12 6 5.3905 -2.0961 1.1916 13 1 5.1036 -2.3191 2.2191 14 6 6.6537 -2.8647 0.7988 15 6 6.3762 -4.3683 0.8626 16 6 7.6325 -5.1339 0.4354 17 7 8.7606 -4.6928 1.2668 18 6 9.5082 -5.5887 1.9413 19 8 10.4066 -5.2087 2.6621 20 6 9.2280 -7.0627 1.7997 21 6 8.0470 -7.5275 2.6542 22 9 8.3066 -7.2480 4.0002 23 6 10.4796 -7.9443 1.9435 24 6 9.9152 -8.7965 0.7946 25 6 9.1567 -7.5387 0.3392 26 6 9.0587 -3.2564 1.3486 27 6 7.7865 -2.5118 1.7656 28 6 4.2290 -2.3995 0.2125 29 1 -0.4850 -0.8366 0.0756 30 1 4.1383 0.7055 -0.0205 31 1 3.7291 0.3253 1.6756 32 1 6.0091 -0.1110 1.8763 33 1 6.2035 -0.3738 0.1121 34 1 6.9441 -2.5919 -0.2158 35 1 6.1099 -4.6462 1.8824 36 1 5.5538 -4.6152 0.1911 37 1 7.8480 -4.9267 -0.6128 38 1 7.4732 -6.2034 0.5733 39 1 7.1439 -7.0032 2.3419 40 1 7.9065 -8.6009 2.5266 41 1 11.4072 -7.4304 1.6912 42 1 10.5335 -8.4743 2.8946 43 1 9.2625 -9.6029 1.1289 44 1 10.6728 -9.1302 0.0855 45 1 8.1424 -7.7411 -0.0050 46 1 9.7213 -6.9129 -0.3520 47 1 9.3905 -2.8960 0.3750 48 1 9.8412 -3.0850 2.0879 49 1 7.9678 -1.4374 1.7368 50 1 7.5067 -2.8067 2.7769 51 1 3.6944 -3.2967 0.5245 52 1 4.6076 -2.5182 -0.8027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039162949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:28 Heat of formation + Delta-G solvation = -60.558217 kcal Electronic energy + Delta-G solvation = -31114.703379 eV Core-core repulsion = 27028.799387 eV Total energy + Delta-G solvation = -4085.903992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.71590 -41.90967 -40.23670 -38.95009 -38.01560 -35.34458 -33.87360 -32.33831 -31.28362 -29.92856 -29.67911 -27.00801 -26.80872 -25.63300 -24.83156 -23.97352 -22.54192 -22.17646 -21.01161 -20.55878 -19.69373 -19.53243 -18.30796 -17.50843 -17.11999 -17.02346 -16.82851 -16.65357 -16.35367 -15.75276 -15.62930 -15.37186 -15.23659 -15.00337 -14.82940 -14.68303 -14.40688 -14.16680 -13.89864 -13.58939 -13.48675 -13.26982 -13.07457 -13.02328 -12.95672 -12.81559 -12.39599 -12.33741 -12.24560 -12.16467 -12.00390 -11.84391 -11.51372 -11.48690 -11.39069 -11.32493 -11.21372 -11.10334 -10.95358 -10.70693 -10.52601 -9.66653 -9.05616 -8.64296 -5.44269 1.39243 1.48403 1.51055 1.70647 1.96283 2.55092 3.12539 3.16129 3.19681 3.33620 3.52390 3.58535 3.59755 3.74730 3.79448 3.84904 3.94442 4.05157 4.11626 4.17936 4.25776 4.27879 4.36520 4.41264 4.43878 4.49186 4.53808 4.62869 4.71001 4.74158 4.76666 4.78973 4.82606 4.88109 4.91539 4.96132 4.99156 5.02376 5.06415 5.10077 5.11599 5.14982 5.20436 5.28468 5.35463 5.40098 5.53491 5.57298 5.60401 6.11142 6.36969 6.83937 7.10907 7.48457 8.11857 8.88937 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.002539 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.559112 B =11024.369657 C =11476.608941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.087 4.087 3 Si 1.112 2.888 4 H -0.282 1.282 5 H -0.315 1.315 6 H -0.254 1.254 7 C -0.307 4.307 8 H 0.048 0.952 9 N -0.639 5.639 10 C 0.086 3.914 11 C -0.112 4.112 12 C -0.081 4.081 13 H 0.066 0.934 14 C -0.063 4.063 15 C -0.132 4.132 16 C 0.100 3.900 17 N -0.604 5.604 18 C 0.523 3.477 19 O -0.586 6.586 20 C -0.149 4.149 21 C 0.080 3.920 22 F -0.233 7.233 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.113 4.113 26 C 0.111 3.889 27 C -0.120 4.120 28 C 0.139 3.861 29 H 0.247 0.753 30 H 0.028 0.972 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.051 0.949 51 H 0.034 0.966 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.093 -18.040 -0.417 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.279 4.279 3 Si 0.941 3.059 4 H -0.209 1.209 5 H -0.245 1.245 6 H -0.179 1.179 7 C -0.436 4.436 8 H 0.066 0.934 9 N -0.367 5.367 10 C -0.038 4.038 11 C -0.149 4.149 12 C -0.101 4.101 13 H 0.085 0.915 14 C -0.082 4.082 15 C -0.171 4.171 16 C -0.021 4.021 17 N -0.336 5.336 18 C 0.312 3.688 19 O -0.466 6.466 20 C -0.153 4.153 21 C 0.026 3.974 22 F -0.214 7.214 23 C -0.156 4.156 24 C -0.166 4.166 25 C -0.150 4.150 26 C -0.011 4.011 27 C -0.158 4.158 28 C 0.015 3.985 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.128 0.872 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.070 0.930 51 H 0.052 0.948 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 24.305 -16.227 -0.099 29.225 hybrid contribution -0.659 -1.333 0.389 1.537 sum 23.646 -17.561 0.290 29.455 Atomic orbital electron populations 1.70994 1.07029 1.28379 1.54964 1.27087 0.96532 1.04568 0.99665 0.83378 0.72287 0.71993 0.78287 1.20939 1.24503 1.17901 1.20108 0.84319 0.94912 1.44246 0.93403 1.44983 1.05266 1.07207 1.79197 1.22254 0.93660 0.91227 0.96656 1.22615 0.93633 0.95606 1.03082 1.22265 0.94451 0.94759 0.98591 0.91516 1.21009 0.92602 0.94580 1.00041 1.22014 0.97989 0.94700 1.02349 1.22246 0.84014 1.00642 0.95205 1.48223 1.31196 1.06768 1.47400 1.20818 0.80996 0.88792 0.78166 1.90656 1.34222 1.81482 1.40245 1.22907 1.00024 0.90764 1.01564 1.22110 0.96164 1.04349 0.74799 1.92766 1.95665 1.95794 1.37213 1.22812 0.95364 0.96754 1.00660 1.22905 1.00295 0.96488 0.96907 1.23103 1.03568 0.97345 0.90990 1.21623 0.97558 0.79404 1.02553 1.21886 0.93990 1.01155 0.98783 1.21778 0.90540 0.89120 0.97076 0.94456 0.95484 0.95134 0.89042 0.89413 0.89534 0.92396 0.89588 0.88966 0.87262 0.88762 0.86109 0.90817 0.91279 0.87723 0.89607 0.87217 0.88938 0.89615 0.91072 0.89315 0.93024 0.94782 0.94868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.60 13.70 21.65 0.30 -63.30 16 2 C -0.09 -5.27 5.50 84.86 0.47 -4.80 16 3 Si 1.11 54.84 24.50 68.60 1.68 56.52 16 4 H -0.28 -12.94 6.58 99.48 0.65 -12.28 16 5 H -0.32 -16.07 7.11 99.48 0.71 -15.37 16 6 H -0.25 -11.12 5.39 99.48 0.54 -10.59 16 7 C -0.31 -18.02 10.58 84.04 0.89 -17.13 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 9 N -0.64 -30.68 3.36 -691.95 -2.32 -33.00 16 10 C 0.09 3.56 4.63 86.73 0.40 3.96 16 11 C -0.11 -3.17 5.57 31.79 0.18 -2.99 16 12 C -0.08 -2.21 2.57 -9.40 -0.02 -2.23 16 13 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.06 -1.20 1.66 -10.77 -0.02 -1.22 16 15 C -0.13 -2.14 5.18 30.67 0.16 -1.98 16 16 C 0.10 1.19 5.29 86.36 0.46 1.65 16 17 N -0.60 -10.68 2.97 -818.92 -2.43 -13.12 16 18 C 0.52 11.54 6.43 87.66 0.56 12.10 16 19 O -0.59 -18.50 15.96 -3.04 -0.05 -18.55 16 20 C -0.15 -2.13 0.48 -52.40 -0.03 -2.15 16 21 C 0.08 1.05 6.53 71.98 0.47 1.52 16 22 F -0.23 -5.37 17.15 44.97 0.77 -4.60 16 23 C -0.12 -1.67 6.90 31.12 0.21 -1.46 16 24 C -0.13 -0.83 7.73 31.12 0.24 -0.59 16 25 C -0.11 -0.78 5.20 31.12 0.16 -0.62 16 26 C 0.11 2.02 6.43 86.36 0.56 2.58 16 27 C -0.12 -2.18 5.23 30.67 0.16 -2.02 16 28 C 0.14 5.04 5.65 86.86 0.49 5.53 16 29 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 30 H 0.03 1.18 4.07 -2.38 -0.01 1.17 16 31 H 0.03 1.36 6.18 -2.39 -0.01 1.34 16 32 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 33 H 0.09 2.14 8.01 -2.39 -0.02 2.12 16 34 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.38 7.21 -2.39 -0.02 1.37 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 0.84 3.15 -2.39 -0.01 0.83 16 39 H 0.09 0.99 6.83 -2.39 -0.02 0.97 16 40 H 0.12 0.77 7.30 -2.38 -0.02 0.75 16 41 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 42 H 0.07 1.07 8.10 -2.38 -0.02 1.05 16 43 H 0.10 0.32 7.60 -2.39 -0.02 0.30 16 44 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.11 0.22 6.96 -2.39 -0.02 0.20 16 46 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 1.61 7.01 -2.38 -0.02 1.59 16 49 H 0.09 1.45 7.45 -2.39 -0.02 1.43 16 50 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.03 1.26 8.01 -2.39 -0.02 1.24 16 52 H 0.03 1.14 8.04 -2.39 -0.02 1.12 16 Total: -1.00 -82.05 382.15 3.92 -78.12 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.64 Total: 7.80 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 5.34 Total: -9.86 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -4.46 Total: -109.43 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.05 Total: -18.55 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.77 Total: -4.60 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 1.68 Total: 56.52 kcal Total: -82.05 3.92 -78.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039162949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.563 kcal (2) G-P(sol) polarization free energy of solvation -82.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds