Wall clock time and date at job start Tue Mar 31 2020 21:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47277 * 299.99981 * 3 2 1 6 6 H 1.48497 * 109.47482 * 60.00153 * 3 2 1 7 7 C 1.38813 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00267 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99495 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65093 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83166 * 155.90547 * 10 9 7 12 12 C 1.55157 * 101.58361 * 37.00509 * 11 10 9 13 13 H 1.09002 * 110.71769 * 83.04010 * 12 11 10 14 14 C 1.52998 * 110.72217 * 206.13457 * 12 11 10 15 15 H 1.08997 * 109.58279 * 69.84665 * 14 12 11 16 16 C 1.53197 * 109.70357 * 309.49269 * 14 12 11 17 17 C 1.53037 * 109.30940 * 185.50542 * 16 14 12 18 18 C 1.53035 * 109.53943 * 61.36801 * 17 16 14 19 19 C 1.53621 * 109.24090 * 298.50929 * 18 17 16 20 20 N 1.46921 * 109.58704 * 190.13155 * 14 12 11 21 21 C 1.34777 * 120.63198 * 353.51904 * 20 14 12 22 22 O 1.21279 * 119.99864 * 6.48112 * 21 20 14 23 23 C 1.50694 * 120.00196 * 186.48517 * 21 20 14 24 24 F 1.39903 * 110.54117 * 45.74321 * 23 21 20 25 25 C 1.54889 * 110.48774 * 283.13247 * 23 21 20 26 26 C 1.54891 * 102.74996 * 203.37844 * 25 23 21 27 27 C 1.54259 * 104.19338 * 37.94217 * 26 25 23 28 28 C 1.53872 * 106.60199 * 336.39015 * 27 26 25 29 29 C 1.47317 * 125.61268 * 180.19396 * 9 7 2 30 30 H 0.97004 * 120.00120 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36892 * 37.06795 * 10 9 7 32 32 H 1.09003 * 110.45898 * 274.78607 * 10 9 7 33 33 H 1.09000 * 111.00094 * 278.93394 * 11 10 9 34 34 H 1.08999 * 111.00670 * 155.08563 * 11 10 9 35 35 H 1.08996 * 109.49725 * 305.45898 * 16 14 12 36 36 H 1.09005 * 109.49541 * 65.52281 * 16 14 12 37 37 H 1.09005 * 109.45882 * 181.38498 * 17 16 14 38 38 H 1.08998 * 109.46543 * 301.34406 * 17 16 14 39 39 H 1.09006 * 109.49743 * 58.58063 * 18 17 16 40 40 H 1.08998 * 109.50012 * 178.64624 * 18 17 16 41 41 H 1.08999 * 109.74204 * 295.11761 * 19 18 17 42 42 H 1.09003 * 109.66812 * 174.54954 * 19 18 17 43 43 H 1.09003 * 110.75829 * 85.05775 * 25 23 21 44 44 H 1.08998 * 110.75519 * 321.69562 * 25 23 21 45 45 H 1.08994 * 110.48343 * 279.26241 * 26 25 23 46 46 H 1.09003 * 110.48486 * 156.61807 * 26 25 23 47 47 H 1.08998 * 110.03509 * 95.67863 * 27 26 25 48 48 H 1.09005 * 110.03158 * 217.10348 * 27 26 25 49 49 H 1.08992 * 110.03411 * 119.28713 * 28 27 26 50 50 H 1.09002 * 110.03057 * 240.71858 * 28 27 26 51 51 H 1.09002 * 110.06361 * 61.68635 * 29 9 7 52 52 H 1.08999 * 109.85133 * 300.42340 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4021 -3.9323 -0.6112 12 6 0.7784 -4.7524 -0.0272 13 1 0.5454 -5.1008 0.9791 14 6 1.1225 -5.9313 -0.9398 15 1 1.5708 -5.5609 -1.8616 16 6 -0.1499 -6.7190 -1.2679 17 6 0.2217 -7.9710 -2.0656 18 6 1.1374 -8.8618 -1.2230 19 6 2.4285 -8.0958 -0.8970 20 7 2.0682 -6.8239 -0.2560 21 6 2.5992 -6.4799 0.9340 22 8 2.2107 -5.4837 1.5062 23 6 3.6758 -7.3332 1.5536 24 9 4.6430 -7.6715 0.6010 25 6 3.0622 -8.6099 2.1801 26 6 4.1193 -9.0136 3.2378 27 6 4.6073 -7.6697 3.8169 28 6 4.3254 -6.6013 2.7461 29 6 1.9337 -3.7298 0.0030 30 1 -0.4850 0.8401 0.0004 31 1 -0.5998 -1.7588 -0.6147 32 1 -0.5283 -2.4863 1.0186 33 1 -0.3532 -3.8980 -1.6996 34 1 -1.3592 -4.3328 -0.2771 35 1 -0.6457 -7.0112 -0.3422 36 1 -0.8210 -6.0961 -1.8592 37 1 -0.6842 -8.5206 -2.3216 38 1 0.7395 -7.6792 -2.9793 39 1 0.6294 -9.1338 -0.2977 40 1 1.3822 -9.7645 -1.7826 41 1 2.9814 -7.8984 -1.8155 42 1 3.0436 -8.6860 -0.2177 43 1 2.9483 -9.3921 1.4295 44 1 2.1067 -8.3865 2.6546 45 1 4.9444 -9.5485 2.7675 46 1 3.6642 -9.6228 4.0187 47 1 4.0605 -7.4362 4.7304 48 1 5.6765 -7.7184 4.0234 49 1 3.6418 -5.8493 3.1399 50 1 5.2577 -6.1314 2.4329 51 1 2.5281 -3.8686 0.9061 52 1 2.5616 -3.8539 -0.8793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039215705.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:02 Heat of formation + Delta-G solvation = -54.499024 kcal Electronic energy + Delta-G solvation = -32499.958717 eV Core-core repulsion = 28414.317471 eV Total energy + Delta-G solvation = -4085.641246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.01731 -41.89818 -39.18505 -38.38152 -37.67612 -34.93178 -33.89828 -32.70134 -30.70255 -29.98412 -29.83494 -28.86093 -26.82644 -25.68474 -24.28371 -23.10897 -22.02393 -21.82600 -21.16225 -20.98783 -20.27008 -19.04981 -18.30969 -17.63664 -16.97690 -16.78751 -16.54054 -16.38683 -15.89927 -15.72816 -15.62052 -15.23796 -15.05073 -14.80742 -14.63747 -14.42453 -14.24654 -14.00235 -13.75861 -13.67639 -13.41482 -13.29033 -12.89428 -12.81855 -12.72529 -12.61142 -12.42373 -12.27661 -12.23416 -12.02072 -11.94469 -11.85708 -11.83646 -11.69422 -11.61573 -11.45326 -11.33273 -11.30536 -11.15857 -10.75064 -9.96061 -9.56268 -8.82376 -7.78336 -5.22151 1.38300 1.41155 1.43675 1.53911 1.84644 2.47462 3.03967 3.21893 3.29082 3.37206 3.57993 3.70315 3.75921 3.83092 3.97506 4.08328 4.15871 4.17578 4.24497 4.28905 4.32526 4.36450 4.38644 4.42433 4.57525 4.58830 4.65515 4.69316 4.72598 4.83463 4.91980 4.94079 4.96538 4.99691 5.07050 5.09816 5.14755 5.16315 5.18790 5.23754 5.25953 5.27232 5.38132 5.40437 5.48085 5.57795 5.62257 5.72757 5.82088 6.28987 6.37096 7.08203 7.13793 7.78769 8.45034 9.23563 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.003982 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.337251 B = 7029.726489 C = 8604.239200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.628 5.628 10 C 0.158 3.842 11 C -0.127 4.127 12 C -0.072 4.072 13 H 0.090 0.910 14 C 0.162 3.838 15 H 0.061 0.939 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.093 3.907 20 N -0.597 5.597 21 C 0.479 3.521 22 O -0.528 6.528 23 C 0.100 3.900 24 F -0.194 7.194 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.143 4.143 29 C 0.148 3.852 30 H 0.247 0.753 31 H 0.072 0.928 32 H -0.025 1.025 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.038 0.962 52 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 -27.673 0.451 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.216 1.216 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.033 3.967 11 C -0.166 4.166 12 C -0.091 4.091 13 H 0.108 0.892 14 C 0.059 3.941 15 H 0.079 0.921 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.165 4.165 19 C -0.028 4.028 20 N -0.330 5.330 21 C 0.266 3.734 22 O -0.406 6.406 23 C 0.078 3.922 24 F -0.174 7.174 25 C -0.169 4.169 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.181 4.181 29 C 0.024 3.976 30 H 0.057 0.943 31 H 0.090 0.910 32 H -0.007 1.007 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.055 0.945 52 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 4.107 -26.965 0.711 27.285 hybrid contribution 0.579 1.813 -0.024 1.903 sum 4.686 -25.152 0.687 25.594 Atomic orbital electron populations 1.70081 1.06166 1.24896 1.58768 1.25649 0.96738 1.00896 1.02731 0.84952 0.77816 0.79138 0.77082 1.19550 1.21139 1.21598 1.19464 0.90681 0.84282 1.42547 0.91236 1.45005 1.02897 1.01077 1.86435 1.21657 0.84013 0.95232 0.95841 1.22990 0.98143 0.95782 0.99639 1.22374 0.94314 0.93005 0.99451 0.89247 1.21277 0.90232 0.88822 0.93819 0.92136 1.21924 0.95365 0.97466 1.01218 1.21538 1.00628 0.95146 0.98132 1.22002 0.94697 0.98659 1.01140 1.22348 0.98389 0.83073 0.98987 1.48121 1.44112 1.21268 1.19451 1.21220 0.84351 0.85443 0.82422 1.90802 1.61573 1.25822 1.62393 1.22019 0.85371 0.97521 0.87286 1.92847 1.65011 1.93351 1.66239 1.23184 1.00041 0.93753 0.99873 1.22396 0.98069 0.96864 0.98005 1.22144 1.02501 0.93648 0.97404 1.22680 1.01194 0.99669 0.94600 1.21923 0.95162 0.84363 0.96167 0.94287 0.90978 1.00678 0.91807 0.89933 0.91573 0.90249 0.89679 0.91623 0.91097 0.87951 0.91056 0.87938 0.87486 0.89362 0.89980 0.88621 0.90682 0.90161 0.90467 0.91157 0.94492 0.98977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 10.09 21.65 0.22 -60.25 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 3 Si 0.98 49.05 29.55 68.60 2.03 51.08 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.24 -15.12 10.28 84.03 0.86 -14.26 16 8 H 0.07 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -37.13 3.40 -691.24 -2.35 -39.49 16 10 C 0.16 8.73 5.89 86.86 0.51 9.24 16 11 C -0.13 -5.22 5.17 31.99 0.17 -5.05 16 12 C -0.07 -2.88 1.87 -9.61 -0.02 -2.90 16 13 H 0.09 3.83 5.99 -4.09 -0.02 3.80 16 14 C 0.16 4.82 2.48 44.98 0.11 4.93 16 15 H 0.06 1.95 7.81 -2.39 -0.02 1.93 16 16 C -0.12 -2.68 4.87 30.67 0.15 -2.53 16 17 C -0.12 -1.76 5.88 30.62 0.18 -1.58 16 18 C -0.13 -1.59 6.10 30.81 0.19 -1.40 16 19 C 0.09 1.64 5.63 86.51 0.49 2.12 16 20 N -0.60 -15.72 2.97 -794.22 -2.36 -18.07 16 21 C 0.48 14.61 6.46 87.66 0.57 15.18 16 22 O -0.53 -20.90 8.27 -3.03 -0.03 -20.93 16 23 C 0.10 2.34 0.91 -10.47 -0.01 2.33 16 24 F -0.19 -4.63 14.82 44.97 0.67 -3.97 16 25 C -0.13 -2.02 5.64 31.89 0.18 -1.84 16 26 C -0.12 -1.44 6.83 31.67 0.22 -1.23 16 27 C -0.12 -1.98 6.80 31.32 0.21 -1.77 16 28 C -0.14 -3.52 6.07 31.32 0.19 -3.33 16 29 C 0.15 7.44 5.86 86.67 0.51 7.95 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.07 4.41 5.87 -2.39 -0.01 4.40 16 32 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 33 H 0.06 2.51 7.84 -2.39 -0.02 2.49 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.76 7.15 -2.38 -0.02 1.74 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.55 3.63 -2.39 -0.01 1.54 16 43 H 0.11 1.18 6.54 -2.39 -0.02 1.17 16 44 H 0.09 1.45 8.05 -2.39 -0.02 1.43 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.08 2.33 6.75 -2.39 -0.02 2.32 16 50 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 51 H 0.04 2.03 5.53 -13.61 -0.08 1.95 16 52 H -0.01 -0.39 7.60 -2.39 -0.02 -0.41 16 Total: -1.00 -77.98 377.37 3.98 -74.00 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.83 Total: 15.47 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.97 Total: 2.16 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.49 Total: -117.81 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.03 Total: -20.93 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.67 Total: -3.97 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -77.98 3.98 -74.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039215705.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.503 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds