Wall clock time and date at job start Tue Mar 31 2020 21:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48498 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47030 * 300.00115 * 3 2 1 6 6 H 1.48496 * 109.46849 * 60.00063 * 3 2 1 7 7 C 1.38814 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99266 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.65099 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27150 * 178.98558 * 10 9 7 12 12 C 1.55153 * 102.94104 * 337.80735 * 11 10 9 13 13 H 1.09005 * 111.00033 * 277.38629 * 12 11 10 14 14 C 1.52998 * 111.00242 * 153.58033 * 12 11 10 15 15 H 1.09001 * 109.70763 * 54.63599 * 14 12 11 16 16 C 1.53199 * 109.58538 * 294.28056 * 14 12 11 17 17 C 1.53033 * 109.31482 * 185.57966 * 16 14 12 18 18 C 1.53045 * 109.54067 * 61.36306 * 17 16 14 19 19 C 1.53196 * 109.33994 * 298.62290 * 18 17 16 20 20 N 1.46928 * 109.58472 * 174.99456 * 14 12 11 21 21 C 1.34772 * 120.63409 * 353.41235 * 20 14 12 22 22 O 1.21282 * 119.99553 * 4.72447 * 21 20 14 23 23 C 1.50699 * 120.00404 * 184.71980 * 21 20 14 24 24 F 1.39907 * 110.01397 * 47.80434 * 23 21 20 25 25 C 1.54264 * 110.02972 * 286.36570 * 23 21 20 26 26 C 1.54894 * 104.19149 * 217.10142 * 25 23 21 27 27 C 1.54883 * 102.74906 * 37.94366 * 26 25 23 28 28 C 1.53870 * 110.03525 * 169.19295 * 23 21 20 29 29 C 1.47420 * 125.64610 * 180.02562 * 9 7 2 30 30 H 0.97008 * 120.00071 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.88292 * 59.56650 * 10 9 7 32 32 H 1.09002 * 110.00823 * 298.47678 * 10 9 7 33 33 H 1.08998 * 110.71534 * 219.44227 * 11 10 9 34 34 H 1.08996 * 110.71725 * 96.16989 * 11 10 9 35 35 H 1.08998 * 109.49234 * 65.62923 * 16 14 12 36 36 H 1.09005 * 109.49690 * 305.53339 * 16 14 12 37 37 H 1.09006 * 109.45987 * 301.34952 * 17 16 14 38 38 H 1.08999 * 109.46495 * 181.38721 * 17 16 14 39 39 H 1.08999 * 109.49029 * 58.58494 * 18 17 16 40 40 H 1.08999 * 109.50050 * 178.65096 * 18 17 16 41 41 H 1.09000 * 109.58509 * 174.43631 * 19 18 17 42 42 H 1.08993 * 109.58548 * 294.85817 * 19 18 17 43 43 H 1.08993 * 110.49122 * 335.78052 * 25 23 21 44 44 H 1.09001 * 110.48593 * 98.42896 * 25 23 21 45 45 H 1.09000 * 110.75402 * 279.62417 * 26 25 23 46 46 H 1.09004 * 110.75467 * 156.25627 * 26 25 23 47 47 H 1.09004 * 110.48458 * 203.38154 * 27 26 25 48 48 H 1.09000 * 110.59984 * 80.78730 * 27 26 25 49 49 H 1.08996 * 110.03330 * 238.57281 * 28 23 21 50 50 H 1.09002 * 110.03217 * 359.95682 * 28 23 21 51 51 H 1.09006 * 110.36640 * 85.24882 * 29 9 7 52 52 H 1.09002 * 110.37422 * 322.92232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5328 0.0005 11 6 -0.4485 -4.0442 -0.0260 12 6 0.8514 -4.6561 -0.6116 13 1 0.8552 -4.5969 -1.7000 14 6 1.0368 -6.1008 -0.1433 15 1 0.1482 -6.6831 -0.3872 16 6 1.2663 -6.1243 1.3712 17 6 1.5888 -7.5538 1.8122 18 6 2.8707 -8.0255 1.1220 19 6 2.6599 -8.0242 -0.3954 20 7 2.2082 -6.6877 -0.8083 21 6 2.8567 -6.0133 -1.7783 22 8 2.5285 -4.8780 -2.0508 23 6 3.9897 -6.6698 -2.5242 24 9 3.6112 -7.9513 -2.9386 25 6 5.2385 -6.7522 -1.6223 26 6 6.4219 -6.4944 -2.5878 27 6 5.8572 -5.4102 -3.5389 28 6 4.3830 -5.8166 -3.7428 29 6 1.9334 -3.7311 -0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5583 -2.0522 -0.8827 32 1 -0.5561 -2.0839 0.9014 33 1 -1.2990 -4.2515 -0.6754 34 1 -0.6310 -4.4180 0.9814 35 1 0.3662 -5.7806 1.8809 36 1 2.1002 -5.4690 1.6230 37 1 0.7651 -8.2130 1.5379 38 1 1.7283 -7.5777 2.8930 39 1 3.6894 -7.3523 1.3761 40 1 3.1129 -9.0348 1.4548 41 1 3.5986 -8.2640 -0.8949 42 1 1.9037 -8.7633 -0.6598 43 1 5.2024 -5.9844 -0.8495 44 1 5.3207 -7.7424 -1.1741 45 1 6.6740 -7.3996 -3.1402 46 1 7.2888 -6.1180 -2.0446 47 1 6.3908 -5.4210 -4.4893 48 1 5.9209 -4.4246 -3.0778 49 1 4.2798 -6.4012 -4.6569 50 1 3.7538 -4.9280 -3.7952 51 1 2.1669 -4.0418 1.0179 52 1 2.8326 -3.7406 -0.6166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039215706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:06 Heat of formation + Delta-G solvation = -51.480612 kcal Electronic energy + Delta-G solvation = -32826.841201 eV Core-core repulsion = 28741.330843 eV Total energy + Delta-G solvation = -4085.510357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.01792 -41.95180 -39.31463 -38.27806 -37.67448 -34.91412 -33.86513 -32.64564 -30.79263 -29.92768 -29.77597 -28.61218 -26.89803 -25.69400 -24.57033 -22.97382 -22.18532 -21.94084 -21.46987 -20.80738 -19.83966 -18.92611 -18.24002 -17.50585 -16.97354 -16.75653 -16.61279 -16.42866 -15.99198 -15.81207 -15.54166 -15.20394 -14.97573 -14.81856 -14.55423 -14.46361 -14.30787 -14.03282 -13.88442 -13.77065 -13.47288 -13.16200 -12.89916 -12.79051 -12.67475 -12.56934 -12.33844 -12.28759 -12.13754 -12.00429 -11.90458 -11.85432 -11.82689 -11.65059 -11.53080 -11.45339 -11.36752 -11.30034 -11.19529 -10.71360 -9.98994 -9.46237 -8.77752 -7.84044 -5.17356 1.40090 1.42627 1.43560 1.53061 1.84177 2.48826 3.05610 3.24934 3.32588 3.38163 3.55893 3.68700 3.83579 3.91023 3.95878 4.03854 4.15666 4.18788 4.26282 4.27622 4.31990 4.35586 4.36522 4.42184 4.54119 4.62506 4.66551 4.72478 4.78880 4.82638 4.88266 4.95374 4.97568 5.02885 5.07931 5.09558 5.14911 5.15946 5.21780 5.24501 5.27438 5.29837 5.36985 5.42115 5.50902 5.56219 5.68936 5.73126 5.83315 6.21680 6.38085 7.11092 7.13968 7.81955 8.48406 9.27108 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.004478 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.689251 B = 6251.453177 C = 7797.366279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.235 4.235 8 H 0.073 0.927 9 N -0.625 5.625 10 C 0.190 3.810 11 C -0.134 4.134 12 C -0.085 4.085 13 H 0.085 0.915 14 C 0.165 3.835 15 H 0.089 0.911 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.131 4.131 19 C 0.095 3.905 20 N -0.595 5.595 21 C 0.478 3.522 22 O -0.528 6.528 23 C 0.106 3.894 24 F -0.192 7.192 25 C -0.136 4.136 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.145 4.145 29 C 0.151 3.849 30 H 0.245 0.755 31 H -0.001 1.001 32 H 0.004 0.996 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.092 0.908 50 H 0.070 0.930 51 H 0.018 0.982 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 -24.678 -1.227 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.364 4.364 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.065 3.935 11 C -0.173 4.173 12 C -0.104 4.104 13 H 0.103 0.897 14 C 0.062 3.938 15 H 0.107 0.893 16 C -0.175 4.175 17 C -0.151 4.151 18 C -0.169 4.169 19 C -0.026 4.026 20 N -0.328 5.328 21 C 0.265 3.735 22 O -0.406 6.406 23 C 0.085 3.915 24 F -0.173 7.173 25 C -0.174 4.174 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.183 4.183 29 C 0.026 3.974 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.022 0.978 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.130 0.870 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.074 0.926 49 H 0.110 0.890 50 H 0.089 0.911 51 H 0.036 0.964 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.986 -23.931 -1.371 25.967 hybrid contribution -0.260 1.672 -0.130 1.697 sum 9.727 -22.259 -1.501 24.338 Atomic orbital electron populations 1.70224 1.06300 1.24951 1.58945 1.25657 0.96674 1.00967 1.03062 0.85004 0.78058 0.79414 0.76879 1.19164 1.21884 1.21432 1.19441 0.90628 0.84163 1.42178 0.90945 1.44787 1.02394 1.01408 1.86534 1.20800 0.84000 0.91860 0.96867 1.22937 0.97758 0.95528 1.01046 1.22716 0.94106 0.92817 1.00774 0.89731 1.21179 0.87562 0.92344 0.92730 0.89282 1.22131 1.02466 0.98830 0.94054 1.21512 0.98316 0.94450 1.00773 1.21942 0.97982 1.03291 0.93645 1.22272 1.01988 0.81967 0.96353 1.48161 1.29565 1.18919 1.36107 1.21269 0.84154 0.86533 0.81571 1.90848 1.64200 1.18745 1.66792 1.21827 0.94065 0.79204 0.96423 1.92862 1.92763 1.40065 1.91569 1.23053 0.91934 1.04684 0.97746 1.22536 0.96893 0.99355 0.96400 1.22352 0.93287 0.99062 1.01270 1.22731 0.99131 1.00310 0.96157 1.22071 0.95709 0.83963 0.95619 0.94556 0.98311 0.97757 0.90973 0.90485 0.90740 0.92524 0.90416 0.90636 0.92320 0.87705 0.88149 0.89750 0.90791 0.87050 0.89060 0.89274 0.89108 0.92556 0.88964 0.91113 0.96422 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.94 10.31 21.65 0.22 -61.72 16 2 C -0.07 -4.42 5.49 84.86 0.47 -3.95 16 3 Si 0.98 49.27 29.55 68.60 2.03 51.30 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.23 -14.60 10.28 84.03 0.86 -13.73 16 8 H 0.07 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -36.19 3.39 -692.00 -2.35 -38.54 16 10 C 0.19 10.52 5.37 86.73 0.47 10.99 16 11 C -0.13 -5.48 6.33 31.78 0.20 -5.28 16 12 C -0.08 -3.34 2.11 -9.40 -0.02 -3.36 16 13 H 0.08 3.85 5.73 -21.30 -0.12 3.73 16 14 C 0.16 4.65 2.77 44.98 0.12 4.78 16 15 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 16 C -0.14 -3.42 4.69 30.67 0.14 -3.27 16 17 C -0.11 -1.84 5.88 30.62 0.18 -1.66 16 18 C -0.13 -1.81 6.08 30.67 0.19 -1.63 16 19 C 0.10 1.58 5.57 86.35 0.48 2.06 16 20 N -0.60 -15.16 2.97 -794.83 -2.36 -17.52 16 21 C 0.48 14.55 6.27 87.66 0.55 15.09 16 22 O -0.53 -21.32 8.46 -3.03 -0.03 -21.34 16 23 C 0.11 2.48 1.08 -10.82 -0.01 2.47 16 24 F -0.19 -4.17 14.73 44.97 0.66 -3.51 16 25 C -0.14 -2.41 5.35 31.67 0.17 -2.24 16 26 C -0.11 -1.68 6.91 31.88 0.22 -1.46 16 27 C -0.12 -2.37 6.83 31.67 0.22 -2.16 16 28 C -0.15 -3.51 6.23 31.32 0.20 -3.32 16 29 C 0.15 7.08 5.74 86.86 0.50 7.58 16 30 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 31 H 0.00 -0.09 7.38 -2.39 -0.02 -0.10 16 32 H 0.00 0.26 7.50 -2.39 -0.02 0.24 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.08 2.78 6.36 -2.39 -0.02 2.76 16 35 H 0.07 1.90 6.65 -2.39 -0.02 1.88 16 36 H 0.06 1.71 5.62 -2.38 -0.01 1.70 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 1.48 3.62 -2.39 -0.01 1.47 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.56 7.85 -2.39 -0.02 1.54 16 44 H 0.11 1.39 6.75 -2.39 -0.02 1.37 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 1.95 8.02 -2.39 -0.02 1.93 16 50 H 0.07 2.23 6.46 -2.39 -0.02 2.21 16 51 H 0.02 0.83 5.23 -2.38 -0.01 0.82 16 52 H 0.04 1.96 5.72 -2.39 -0.01 1.94 16 Total: -1.00 -78.56 372.32 3.92 -74.65 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.81 Total: 15.78 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.93 Total: 0.90 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -4.49 Total: -117.78 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.03 Total: -21.34 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.66 Total: -3.51 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Total: -78.56 3.92 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039215706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.166 kcal (2) G-P(sol) polarization free energy of solvation -78.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds